Wall clock time and date at job start Tue Mar 9 2021 13:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38123 * 119.98060 * 2 1 4 4 C 1.38740 * 119.95810 * 179.97438 * 3 2 1 5 5 O 1.35925 * 120.04247 * 179.97438 * 4 3 2 6 6 C 1.42903 * 116.99722 * 359.97438 * 5 4 3 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.47145 * 179.97438 * 8 7 6 10 10 Si 1.63096 * 114.00209 * 179.97438 * 9 8 7 11 11 C 1.86308 * 109.46996 * 299.99934 * 10 9 8 12 12 C 1.86296 * 109.47317 * 59.99785 * 10 9 8 13 13 C 1.86303 * 109.47337 * 179.97438 * 10 9 8 14 14 C 1.53000 * 109.47258 * 59.99942 * 13 10 9 15 15 C 1.53000 * 109.46873 * 179.97438 * 13 10 9 16 16 C 1.52999 * 109.46706 * 299.99646 * 13 10 9 17 17 C 1.38702 * 119.91439 * 0.24669 * 4 3 2 18 18 C 1.50702 * 120.01851 * 179.72040 * 17 4 3 19 19 O 1.42895 * 109.47366 * 285.00602 * 18 17 4 20 20 Si 1.86304 * 109.46763 * 165.00503 * 18 17 4 21 21 H 1.48501 * 109.47007 * 60.00177 * 20 18 17 22 22 H 1.48504 * 109.46843 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46983 * 300.00158 * 20 18 17 24 24 C 1.38159 * 119.95862 * 359.54521 * 17 4 3 25 25 C 1.38352 * 120.04317 * 0.43443 * 24 17 4 26 26 Cl 1.73595 * 119.95903 * 179.77047 * 25 24 17 27 27 H 1.09009 * 109.46835 * 90.00287 * 1 2 3 28 28 H 1.08997 * 109.47546 * 209.99634 * 1 2 3 29 29 H 1.09000 * 109.47423 * 330.00690 * 1 2 3 30 30 H 1.07997 * 120.01842 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47382 * 60.00054 * 6 5 4 32 32 H 1.09001 * 109.46938 * 300.00041 * 6 5 4 33 33 H 1.09001 * 109.47194 * 299.99575 * 7 6 5 34 34 H 1.08992 * 109.47399 * 59.99748 * 7 6 5 35 35 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 36 36 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 37 37 H 1.08993 * 109.46878 * 60.00010 * 11 10 9 38 38 H 1.09008 * 109.46916 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.46987 * 299.99507 * 11 10 9 40 40 H 1.09001 * 109.47243 * 60.00077 * 12 10 9 41 41 H 1.09000 * 109.47509 * 180.02562 * 12 10 9 42 42 H 1.09006 * 109.47013 * 300.00283 * 12 10 9 43 43 H 1.08998 * 109.46855 * 60.00030 * 14 13 10 44 44 H 1.08994 * 109.46913 * 180.02562 * 14 13 10 45 45 H 1.09005 * 109.46550 * 300.00337 * 14 13 10 46 46 H 1.09000 * 109.47503 * 60.00004 * 15 13 10 47 47 H 1.09006 * 109.46847 * 179.97438 * 15 13 10 48 48 H 1.09001 * 109.47185 * 299.99608 * 15 13 10 49 49 H 1.09000 * 109.46985 * 60.00373 * 16 13 10 50 50 H 1.09006 * 109.46759 * 180.02562 * 16 13 10 51 51 H 1.09000 * 109.47380 * 299.99818 * 16 13 10 52 52 H 1.09000 * 109.46772 * 45.00931 * 18 17 4 53 53 H 0.96693 * 114.00148 * 299.99871 * 19 18 17 54 54 H 1.07998 * 119.98058 * 180.20642 * 24 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1964 0.0000 4 6 3.5846 1.1959 0.0005 5 8 4.2656 2.3722 0.0000 6 6 3.4886 3.5716 -0.0017 7 6 4.4220 4.7839 -0.0027 8 6 3.5901 6.0680 -0.0038 9 8 4.4618 7.2002 -0.0042 10 14 3.6860 8.6348 -0.0060 11 6 2.6192 8.7619 -1.5282 12 6 2.6168 8.7647 1.5141 13 6 4.9355 10.0167 -0.0055 14 6 5.8140 9.9104 -1.2536 15 6 4.2076 11.3624 -0.0079 16 6 5.8110 9.9121 1.2449 17 6 4.2758 -0.0066 -0.0041 18 6 5.7828 -0.0099 -0.0099 19 8 6.2550 0.3400 -1.3124 20 14 6.4018 -1.7088 0.4394 21 1 5.9007 -2.6959 -0.5505 22 1 7.8868 -1.7119 0.4343 23 1 5.9110 -2.0724 1.7930 24 6 3.5820 -1.2013 0.0003 25 6 2.1984 -1.1988 0.0002 26 17 1.3288 -2.7012 -0.0004 27 1 -0.3633 -0.0001 -1.0278 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3634 0.8900 0.5137 30 1 1.6572 2.1317 0.0004 31 1 2.8591 3.5980 0.8878 32 1 2.8605 3.5963 -0.8922 33 1 5.0504 4.7593 0.8876 34 1 5.0511 4.7573 -0.8923 35 1 2.9614 6.0928 -0.8939 36 1 2.9612 6.0943 0.8861 37 1 1.8882 7.9535 -1.5280 38 1 2.1003 9.7206 -1.5292 39 1 3.2448 8.6860 -2.4176 40 1 3.2409 8.6903 2.4047 41 1 2.0980 9.7232 1.5126 42 1 1.8857 7.9562 1.5142 43 1 5.1902 9.9850 -2.1444 44 1 6.5453 10.7186 -1.2531 45 1 6.3325 8.9516 -1.2523 46 1 3.5814 11.4385 0.8810 47 1 4.9387 12.1710 -0.0072 48 1 3.5841 11.4367 -0.8990 49 1 6.3295 8.9533 1.2461 50 1 6.5418 10.7209 1.2454 51 1 5.1851 9.9878 2.1340 52 1 6.1505 0.7146 0.7167 53 1 5.9657 -0.2630 -2.0108 54 1 4.1198 -2.1378 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12058104_18527724.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:23:47 Heat of formation + Delta-G solvation = -158.131979 kcal Electronic energy + Delta-G solvation = -29993.539483 eV Core-core repulsion = 25886.604182 eV Total energy + Delta-G solvation = -4106.935300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 374.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.58983 -39.23938 -38.14295 -37.90550 -37.10271 -36.81844 -34.22798 -33.34707 -30.82810 -29.38348 -29.32892 -29.04780 -27.83263 -27.36874 -26.81625 -25.31618 -23.80537 -22.64712 -21.93353 -20.40587 -19.06507 -18.39808 -17.62380 -17.49010 -17.45968 -16.80513 -16.25938 -16.08213 -15.87885 -15.73451 -15.45472 -15.10571 -14.97619 -14.84536 -14.79735 -14.59465 -14.49981 -13.94164 -13.89242 -13.70201 -13.43495 -13.36655 -13.28780 -13.14970 -13.11759 -12.94822 -12.92763 -12.82945 -12.78524 -12.43336 -12.38600 -12.31754 -12.21564 -12.15816 -11.79609 -11.73794 -11.68953 -11.58410 -11.51532 -11.30531 -11.27646 -10.38569 -10.29074 -10.04403 -10.00168 -9.15883 -0.00918 0.09226 1.11149 1.14515 1.39720 1.45296 1.49809 1.79913 1.88207 2.13425 2.14884 2.37639 2.54719 3.42045 3.56486 3.68052 3.86903 3.92105 3.96418 4.01508 4.11780 4.13451 4.13772 4.28637 4.38447 4.40935 4.47343 4.48118 4.49644 4.53569 4.65698 4.73687 4.76237 4.77202 4.79914 4.81232 4.83398 4.83561 4.90941 4.96417 5.00842 5.08812 5.09965 5.10175 5.13103 5.16405 5.23091 5.27077 5.35842 5.41700 5.45807 5.48310 5.57281 5.62842 5.66294 6.31262 6.72409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.031 4.031 3 C -0.200 4.200 4 C 0.160 3.840 5 O -0.312 6.312 6 C 0.050 3.950 7 C -0.120 4.120 8 C 0.080 3.920 9 O -0.642 6.642 10 Si 1.317 2.683 11 C -0.518 4.518 12 C -0.517 4.517 13 C -0.386 4.386 14 C -0.137 4.137 15 C -0.140 4.140 16 C -0.137 4.137 17 C -0.159 4.159 18 C -0.065 4.065 19 O -0.547 6.547 20 Si 0.972 3.028 21 H -0.244 1.244 22 H -0.269 1.269 23 H -0.256 1.256 24 C -0.082 4.082 25 C -0.087 4.087 26 Cl -0.069 7.069 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.164 0.836 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.046 0.954 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.046 0.954 51 H 0.061 0.939 52 H 0.115 0.885 53 H 0.386 0.614 54 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.347 1.621 0.071 4.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.031 4.031 3 C -0.218 4.218 4 C 0.113 3.887 5 O -0.225 6.225 6 C -0.024 4.024 7 C -0.158 4.158 8 C 0.005 3.995 9 O -0.601 6.601 10 Si 1.447 2.553 11 C -0.619 4.619 12 C -0.619 4.619 13 C -0.428 4.428 14 C -0.194 4.194 15 C -0.197 4.197 16 C -0.194 4.194 17 C -0.160 4.160 18 C -0.175 4.175 19 O -0.354 6.354 20 Si 0.795 3.205 21 H -0.168 1.168 22 H -0.194 1.194 23 H -0.180 1.180 24 C -0.100 4.100 25 C -0.113 4.113 26 Cl -0.040 7.040 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.181 0.819 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.080 0.920 52 H 0.133 0.867 53 H 0.234 0.766 54 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.376 1.088 0.620 3.601 hybrid contribution -0.690 0.321 -0.376 0.849 sum -4.066 1.410 0.243 4.310 Atomic orbital electron populations 1.20998 0.88506 1.04516 1.03992 1.19855 0.97850 0.90441 0.94998 1.21370 0.92320 0.99538 1.08600 1.18893 0.90483 0.85816 0.93506 1.86141 1.36313 1.12487 1.87563 1.22960 0.94395 0.81649 1.03429 1.21467 0.98844 0.90975 1.04490 1.22007 0.90721 0.84246 1.02505 1.85324 1.52325 1.30786 1.91693 0.76162 0.59604 0.54660 0.64831 1.27091 1.11428 1.05234 1.18180 1.27084 1.11448 1.05252 1.18104 1.25974 1.08370 1.10793 0.97659 1.21542 0.99489 1.01549 0.96856 1.21600 1.00163 0.95660 1.02325 1.21541 0.99506 1.01551 0.96822 1.19624 0.97119 0.90378 1.08891 1.24810 0.90366 1.13031 0.89315 1.86530 1.75482 1.56887 1.16499 0.85413 0.79497 0.74659 0.80939 1.16779 1.19377 1.17977 1.20919 0.92615 0.98041 0.98414 1.20715 0.92130 0.87431 1.11063 1.98366 1.76555 1.31910 1.97141 0.89427 0.90793 0.89167 0.81907 0.89725 0.89986 0.90621 0.90853 0.90737 0.90603 0.90690 0.90395 0.91298 0.91243 0.90397 0.90667 0.92047 0.93462 0.92669 0.91737 0.93287 0.91755 0.92644 0.93473 0.92016 0.86674 0.76560 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.48 9.61 71.24 0.68 1.16 16 2 C -0.03 0.00 5.88 -19.86 -0.12 -0.12 16 3 C -0.20 0.21 8.69 22.36 0.19 0.41 16 4 C 0.16 0.36 6.66 22.50 0.15 0.51 16 5 O -0.31 -0.78 9.47 -92.71 -0.88 -1.66 16 6 C 0.05 -0.20 4.74 71.98 0.34 0.14 16 7 C -0.12 0.28 5.95 30.59 0.18 0.46 16 8 C 0.08 -0.37 5.12 71.98 0.37 0.00 16 9 O -0.64 0.44 8.56 -148.98 -1.28 -0.83 16 10 Si 1.32 -4.70 8.45 68.60 0.58 -4.12 16 11 C -0.52 1.80 8.50 113.37 0.96 2.76 16 12 C -0.52 1.89 8.50 113.37 0.96 2.85 16 13 C -0.39 0.29 0.53 -10.79 -0.01 0.28 16 14 C -0.14 -0.09 7.85 71.98 0.56 0.48 16 15 C -0.14 0.24 7.85 71.98 0.56 0.80 16 16 C -0.14 -0.07 7.85 71.98 0.56 0.49 16 17 C -0.16 -0.41 5.27 -19.77 -0.10 -0.52 16 18 C -0.06 -0.12 2.38 71.24 0.17 0.05 16 19 O -0.55 -1.69 12.88 -148.98 -1.92 -3.61 16 20 Si 0.97 0.50 25.49 68.60 1.75 2.25 16 21 H -0.24 0.16 6.74 99.48 0.67 0.83 16 22 H -0.27 -0.97 7.11 99.48 0.71 -0.26 16 23 H -0.26 -0.47 7.11 99.48 0.71 0.24 16 24 C -0.08 -0.19 8.44 22.28 0.19 0.00 16 25 C -0.09 -0.22 6.31 22.33 0.14 -0.08 16 26 Cl -0.07 -0.19 27.29 -2.72 -0.07 -0.26 16 27 H 0.09 -0.44 8.14 -2.38 -0.02 -0.46 16 28 H 0.07 -0.19 6.90 -2.39 -0.02 -0.21 16 29 H 0.09 -0.64 8.08 -2.39 -0.02 -0.66 16 30 H 0.16 -1.08 6.30 -2.91 -0.02 -1.10 16 31 H 0.08 -0.65 7.66 -2.39 -0.02 -0.67 16 32 H 0.08 -0.58 7.66 -2.39 -0.02 -0.60 16 33 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.07 -0.60 7.21 -2.39 -0.02 -0.62 16 36 H 0.08 -0.64 7.21 -2.39 -0.02 -0.65 16 37 H 0.07 -0.38 7.48 -2.39 -0.02 -0.40 16 38 H 0.08 -0.31 7.79 -2.38 -0.02 -0.32 16 39 H 0.07 -0.16 7.79 -2.39 -0.02 -0.17 16 40 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 41 H 0.08 -0.32 7.79 -2.39 -0.02 -0.34 16 42 H 0.07 -0.40 7.48 -2.38 -0.02 -0.42 16 43 H 0.06 -0.06 7.80 -2.39 -0.02 -0.08 16 44 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.05 0.09 7.97 -2.38 -0.02 0.07 16 46 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 47 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 48 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 49 H 0.05 0.08 7.96 -2.39 -0.02 0.06 16 50 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 51 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 52 H 0.12 0.25 7.83 -2.39 -0.02 0.23 16 53 H 0.39 -1.45 8.70 -74.06 -0.64 -2.09 16 54 H 0.14 0.05 4.89 -2.91 -0.01 0.04 16 Total: 0.00 -11.79 437.73 4.94 -6.85 By element: Atomic # 1 Polarization: -9.24 SS G_CDS: 0.94 Total: -8.30 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 5.81 Total: 9.68 kcal Atomic # 8 Polarization: -2.03 SS G_CDS: -4.07 Total: -6.10 kcal Atomic # 14 Polarization: -4.19 SS G_CDS: 2.33 Total: -1.87 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.07 Total: -0.26 kcal Total: -11.79 4.94 -6.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12058104_18527724.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.278 kcal (2) G-P(sol) polarization free energy of solvation -11.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds