Wall clock time and date at job start Tue Mar 9 2021 13:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46609 * 2 1 4 4 C 1.53003 * 109.47486 * 240.00019 * 2 1 3 5 5 Si 1.86301 * 109.47408 * 119.99773 * 2 1 3 6 6 C 1.86298 * 109.47120 * 300.00390 * 5 2 1 7 7 C 1.86295 * 109.47025 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.46967 * 60.00226 * 5 2 1 9 9 C 1.42900 * 113.99669 * 180.02562 * 8 5 2 10 10 C 1.53006 * 109.46861 * 180.02562 * 9 8 5 11 11 O 1.42899 * 109.47533 * 64.99584 * 10 9 8 12 12 C 1.35896 * 117.00275 * 179.97438 * 11 10 9 13 13 C 1.38692 * 120.04923 * 0.02578 * 12 11 10 14 14 C 1.38252 * 119.93504 * 179.97438 * 13 12 11 15 15 Br 1.89107 * 119.98377 * 179.97438 * 14 13 12 16 16 C 1.38339 * 120.03692 * 0.02562 * 14 13 12 17 17 C 1.38269 * 120.09687 * 359.74252 * 16 14 13 18 18 C 1.38133 * 120.06850 * 0.51500 * 17 16 14 19 19 C 1.50697 * 120.02063 * 179.76875 * 18 17 16 20 20 O 1.42906 * 109.46831 * 254.72253 * 19 18 17 21 21 Si 1.86300 * 109.47007 * 14.71642 * 19 18 17 22 22 H 1.48503 * 109.46942 * 60.00611 * 21 19 18 23 23 H 1.48503 * 109.47276 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47372 * 300.00074 * 21 19 18 25 25 H 1.08991 * 109.47119 * 299.99797 * 1 2 3 26 26 H 1.08997 * 109.47165 * 60.00475 * 1 2 3 27 27 H 1.09005 * 109.46621 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.47171 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47313 * 299.99545 * 3 2 1 30 30 H 1.09000 * 109.47298 * 60.00384 * 3 2 1 31 31 H 1.08992 * 109.46938 * 299.99702 * 4 2 1 32 32 H 1.09006 * 109.46531 * 59.99708 * 4 2 1 33 33 H 1.09000 * 109.46992 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47444 * 179.97438 * 6 5 2 35 35 H 1.09005 * 109.47247 * 299.99972 * 6 5 2 36 36 H 1.08998 * 109.47322 * 59.99798 * 6 5 2 37 37 H 1.09003 * 109.47272 * 299.99942 * 7 5 2 38 38 H 1.08996 * 109.47247 * 60.00391 * 7 5 2 39 39 H 1.09010 * 109.46975 * 180.02562 * 7 5 2 40 40 H 1.08996 * 109.47532 * 60.00047 * 9 8 5 41 41 H 1.09007 * 109.47349 * 299.99951 * 9 8 5 42 42 H 1.08997 * 109.46631 * 304.99582 * 10 9 8 43 43 H 1.08997 * 109.46943 * 185.00353 * 10 9 8 44 44 H 1.08007 * 120.03306 * 359.95093 * 13 12 11 45 45 H 1.07999 * 119.95178 * 180.02562 * 16 14 13 46 46 H 1.08000 * 119.96715 * 180.25162 * 17 16 14 47 47 H 1.09000 * 109.47374 * 134.71826 * 19 18 17 48 48 H 0.96693 * 114.00047 * 60.00191 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8774 1.5214 8 8 1.6075 -2.4159 1.5212 9 6 2.0288 -3.1812 2.6520 10 6 1.4640 -4.5994 2.5471 11 8 2.0333 -5.2561 1.4128 12 6 1.6349 -6.5334 1.1751 13 6 0.7148 -7.1418 2.0159 14 6 0.3107 -8.4412 1.7716 15 35 -0.9432 -9.2722 2.9175 16 6 0.8240 -9.1342 0.6899 17 6 1.7377 -8.5274 -0.1520 18 6 2.1484 -7.2312 0.0912 19 6 3.1482 -6.5728 -0.8240 20 8 4.4211 -6.5159 -0.1769 21 14 3.2949 -7.5605 -2.3968 22 1 1.9722 -7.6196 -3.0693 23 1 4.2806 -6.9121 -3.2985 24 1 3.7491 -8.9374 -2.0761 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4427 -0.0005 29 1 1.6766 1.9564 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6769 -1.7488 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1301 -0.7208 -1.2494 34 1 1.8930 -0.5140 3.9323 35 1 1.8933 1.0278 3.0423 36 1 0.4401 0.0000 3.0423 37 1 4.3778 -1.3910 0.6314 38 1 4.3770 0.1504 1.5217 39 1 4.3775 -1.3916 2.4113 40 1 1.6639 -2.7111 3.5652 41 1 3.1177 -3.2250 2.6760 42 1 0.3810 -4.5516 2.4337 43 1 1.7104 -5.1563 3.4510 44 1 0.3146 -6.6011 2.8609 45 1 0.5071 -10.1490 0.5001 46 1 2.1340 -9.0690 -0.9982 47 1 2.8148 -5.5621 -1.0595 48 1 4.7798 -7.3815 0.0621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_12104242_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:24:48 Heat of formation + Delta-G solvation = -144.051290 kcal Electronic energy + Delta-G solvation = -26933.440731 eV Core-core repulsion = 23158.173043 eV Total energy + Delta-G solvation = -3775.267688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 390.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49290 -39.12735 -37.66672 -37.52208 -36.83058 -33.67519 -31.71339 -31.07233 -30.23999 -29.37247 -29.08938 -27.85806 -27.37928 -26.33218 -24.91059 -22.96647 -22.34017 -20.42030 -19.40406 -18.24779 -18.10927 -17.26326 -16.97223 -16.58960 -16.21870 -16.04810 -15.76139 -15.51906 -15.31000 -15.17184 -14.86271 -14.72283 -14.59882 -14.12302 -14.05831 -13.85714 -13.57777 -13.44687 -13.31435 -13.25005 -12.97881 -12.93230 -12.90219 -12.63103 -12.44424 -12.38437 -12.16900 -12.01381 -11.85385 -11.72052 -11.64842 -11.57714 -11.47616 -11.34742 -11.28914 -10.38653 -10.35227 -10.07406 -9.95214 -9.26411 -0.12858 0.23822 0.54578 1.15001 1.39558 1.41425 1.52104 1.72651 1.91501 2.03879 2.08743 2.41418 2.42295 3.50804 3.56228 3.72664 3.77969 3.93742 3.98365 4.04674 4.10961 4.12422 4.13784 4.20048 4.31280 4.45135 4.47617 4.55681 4.64484 4.68049 4.73187 4.73726 4.76453 4.81161 4.86587 4.92504 5.00459 5.07827 5.10877 5.11714 5.15116 5.17295 5.31249 5.34952 5.42464 5.47527 5.50506 5.52446 5.61288 6.30203 6.61711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.287 2.713 6 C -0.512 4.512 7 C -0.510 4.510 8 O -0.618 6.618 9 C 0.088 3.912 10 C 0.052 3.948 11 O -0.284 6.284 12 C 0.168 3.832 13 C -0.186 4.186 14 C -0.045 4.045 15 Br -0.042 7.042 16 C -0.126 4.126 17 C -0.083 4.083 18 C -0.140 4.140 19 C -0.070 4.070 20 O -0.531 6.531 21 Si 0.944 3.056 22 H -0.247 1.247 23 H -0.250 1.250 24 H -0.251 1.251 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.122 0.878 48 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 0.000 1.186 1.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.614 4.614 7 C -0.612 4.612 8 O -0.578 6.578 9 C 0.012 3.988 10 C -0.023 4.023 11 O -0.197 6.197 12 C 0.121 3.879 13 C -0.207 4.207 14 C -0.125 4.125 15 Br 0.044 6.956 16 C -0.146 4.146 17 C -0.102 4.102 18 C -0.141 4.141 19 C -0.181 4.181 20 O -0.335 6.335 21 Si 0.767 3.233 22 H -0.171 1.171 23 H -0.174 1.174 24 H -0.175 1.175 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.158 0.842 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.139 0.861 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.113 -0.195 0.520 0.566 hybrid contribution 0.225 0.272 0.667 0.755 sum 0.112 0.077 1.187 1.194 Atomic orbital electron populations 1.21509 0.93872 1.01963 1.01741 1.25770 1.00610 1.02583 1.12776 1.21559 1.00807 0.94924 1.02098 1.21509 1.00685 1.00287 0.96638 0.76724 0.63155 0.53308 0.64987 1.27055 1.06994 1.09611 1.17751 1.27024 1.24925 1.04608 1.04673 1.85399 1.79107 1.45999 1.47252 1.22064 0.99517 0.89520 0.87688 1.23096 0.99165 0.92208 0.87826 1.86250 1.63996 1.22589 1.46815 1.18626 0.91978 0.84346 0.92987 1.21232 1.01678 0.95281 1.02499 1.21616 0.98424 0.95421 0.97002 1.96803 1.55552 1.80223 1.63052 1.20971 0.98507 1.00754 0.94330 1.20990 0.96559 0.93459 0.99157 1.19805 1.02178 0.94588 0.97559 1.24862 0.83406 1.07680 1.02122 1.86580 1.32249 1.33931 1.80773 0.85812 0.81986 0.78754 0.76792 1.17054 1.17406 1.17479 0.92760 0.92816 0.92192 0.92495 0.92517 0.92568 0.92060 0.92862 0.92640 0.91518 0.90642 0.90879 0.90655 0.90826 0.91511 0.90415 0.91203 0.90604 0.90526 0.84168 0.84397 0.84445 0.86067 0.78132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.01 7.85 37.16 0.29 0.28 16 2 C -0.37 0.07 0.53 -90.62 -0.05 0.02 16 3 C -0.14 0.07 7.85 37.16 0.29 0.36 16 4 C -0.13 -0.05 7.85 37.16 0.29 0.24 16 5 Si 1.29 -1.38 8.45 -169.99 -1.44 -2.82 16 6 C -0.51 0.58 8.50 101.05 0.86 1.43 16 7 C -0.51 0.19 8.50 101.05 0.86 1.05 16 8 O -0.62 -0.14 8.52 -40.08 -0.34 -0.48 16 9 C 0.09 -0.12 5.51 37.16 0.20 0.09 16 10 C 0.05 -0.05 5.12 37.16 0.19 0.14 16 11 O -0.28 -0.49 9.43 -24.26 -0.23 -0.72 16 12 C 0.17 0.26 6.66 -39.22 -0.26 0.00 16 13 C -0.19 -0.16 8.78 -39.41 -0.35 -0.50 16 14 C -0.04 -0.05 6.22 -39.54 -0.25 -0.29 16 15 Br -0.04 -0.04 33.70 -68.01 -2.29 -2.33 16 16 C -0.13 -0.04 9.78 -39.53 -0.39 -0.43 16 17 C -0.08 0.00 8.66 -39.61 -0.34 -0.34 16 18 C -0.14 -0.13 5.27 -104.47 -0.55 -0.68 16 19 C -0.07 -0.03 2.38 36.00 0.09 0.06 16 20 O -0.53 -0.48 12.88 -35.23 -0.45 -0.94 16 21 Si 0.94 -0.47 25.48 -169.99 -4.33 -4.80 16 22 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 23 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 24 H -0.25 0.27 6.74 56.52 0.38 0.65 16 25 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 26 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 27 H 0.06 0.02 7.97 -51.93 -0.41 -0.39 16 28 H 0.06 -0.06 7.79 -51.92 -0.40 -0.46 16 29 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 31 H 0.06 0.05 7.96 -51.93 -0.41 -0.36 16 32 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.05 0.00 7.79 -51.93 -0.40 -0.41 16 34 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 35 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 36 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 37 H 0.07 0.03 7.79 -51.93 -0.40 -0.38 16 38 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 39 H 0.07 -0.05 7.48 -51.92 -0.39 -0.44 16 40 H 0.08 -0.29 7.21 -51.93 -0.37 -0.67 16 41 H 0.07 -0.13 7.22 -51.93 -0.37 -0.50 16 42 H 0.08 -0.11 7.66 -51.93 -0.40 -0.51 16 43 H 0.08 -0.22 7.66 -51.93 -0.40 -0.61 16 44 H 0.14 -0.10 6.30 -52.48 -0.33 -0.43 16 45 H 0.14 -0.16 8.06 -52.49 -0.42 -0.59 16 46 H 0.14 -0.24 4.88 -52.49 -0.26 -0.49 16 47 H 0.12 0.09 7.83 -51.93 -0.41 -0.32 16 48 H 0.37 -0.95 8.70 45.56 0.40 -0.55 16 LS Contribution 402.04 15.07 6.06 6.06 Total: 0.00 -4.97 402.04 -9.63 -14.60 By element: Atomic # 1 Polarization: -2.49 SS G_CDS: -7.49 Total: -9.98 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 0.89 Total: 1.42 kcal Atomic # 8 Polarization: -1.12 SS G_CDS: -1.02 Total: -2.14 kcal Atomic # 14 Polarization: -1.85 SS G_CDS: -5.77 Total: -7.62 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.29 Total: -2.33 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -4.97 -9.63 -14.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12104242_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.451 kcal (2) G-P(sol) polarization free energy of solvation -4.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds