Wall clock time and date at job start Tue Mar 9 2021 13:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47158 * 2 1 4 4 C 1.53001 * 109.46848 * 239.99857 * 2 1 3 5 5 Si 1.86299 * 109.47289 * 120.00273 * 2 1 3 6 6 C 1.86305 * 109.46923 * 299.99714 * 5 2 1 7 7 C 1.86301 * 109.47236 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.47092 * 59.99528 * 5 2 1 9 9 C 1.42903 * 113.99842 * 180.02562 * 8 5 2 10 10 C 1.52997 * 109.47172 * 180.02562 * 9 8 5 11 11 O 1.42899 * 109.47381 * 64.99773 * 10 9 8 12 12 C 1.42900 * 113.99844 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46861 * 180.02562 * 12 11 10 14 14 O 1.42899 * 109.47533 * 64.99584 * 13 12 11 15 15 C 1.35896 * 117.00275 * 179.97438 * 14 13 12 16 16 C 1.38692 * 120.04923 * 0.02578 * 15 14 13 17 17 C 1.38252 * 119.93504 * 179.97438 * 16 15 14 18 18 Br 1.89102 * 119.98399 * 179.97438 * 17 16 15 19 19 C 1.38339 * 120.03692 * 0.02562 * 17 16 15 20 20 C 1.38269 * 120.09687 * 359.74252 * 19 17 16 21 21 C 1.38133 * 120.06850 * 0.51500 * 20 19 17 22 22 C 1.50697 * 120.02063 * 179.76875 * 21 20 19 23 23 O 1.42906 * 109.46831 * 254.72253 * 22 21 20 24 24 Si 1.86300 * 109.47007 * 14.71642 * 22 21 20 25 25 H 1.48503 * 109.46942 * 60.00611 * 24 22 21 26 26 H 1.48503 * 109.47276 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47372 * 300.00074 * 24 22 21 28 28 H 1.09003 * 109.46614 * 299.99952 * 1 2 3 29 29 H 1.08995 * 109.47080 * 59.99855 * 1 2 3 30 30 H 1.08997 * 109.47399 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46892 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46964 * 299.99739 * 3 2 1 33 33 H 1.08994 * 109.47095 * 60.00384 * 3 2 1 34 34 H 1.08999 * 109.47482 * 300.00505 * 4 2 1 35 35 H 1.09004 * 109.46983 * 60.00416 * 4 2 1 36 36 H 1.09004 * 109.47384 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.46871 * 180.02562 * 6 5 2 38 38 H 1.09004 * 109.47113 * 299.99979 * 6 5 2 39 39 H 1.08996 * 109.47251 * 59.99888 * 6 5 2 40 40 H 1.08994 * 109.47036 * 300.00042 * 7 5 2 41 41 H 1.09004 * 109.47115 * 59.99828 * 7 5 2 42 42 H 1.08995 * 109.47027 * 179.97438 * 7 5 2 43 43 H 1.09002 * 109.47052 * 59.99859 * 9 8 5 44 44 H 1.09005 * 109.46984 * 300.00056 * 9 8 5 45 45 H 1.09003 * 109.46871 * 305.00075 * 10 9 8 46 46 H 1.08998 * 109.47374 * 185.00258 * 10 9 8 47 47 H 1.08996 * 109.47532 * 60.00056 * 12 11 10 48 48 H 1.09007 * 109.47349 * 299.99959 * 12 11 10 49 49 H 1.08997 * 109.46631 * 304.99582 * 13 12 11 50 50 H 1.08997 * 109.46943 * 185.00353 * 13 12 11 51 51 H 1.08007 * 120.03306 * 359.95093 * 16 15 14 52 52 H 1.07999 * 119.95178 * 180.02562 * 19 17 16 53 53 H 1.08000 * 119.96715 * 180.25162 * 20 19 17 54 54 H 1.09000 * 109.47374 * 134.71826 * 22 21 20 55 55 H 0.96698 * 113.99401 * 299.99518 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5301 0.0000 3.0423 7 6 4.0140 -0.8790 1.5207 8 8 1.6073 -2.4160 1.5211 9 6 2.0285 -3.1814 2.6519 10 6 1.4637 -4.5994 2.5470 11 8 2.0329 -5.2562 1.4127 12 6 1.5689 -6.5943 1.2225 13 6 2.2413 -7.1964 -0.0130 14 8 3.6465 -7.3129 0.2185 15 6 4.3966 -7.8342 -0.7877 16 6 3.7925 -8.2250 -1.9734 17 6 4.5579 -8.7545 -2.9958 18 35 3.7356 -9.2885 -4.6128 19 6 5.9248 -8.8950 -2.8361 20 6 6.5292 -8.5014 -1.6564 21 6 5.7678 -7.9767 -0.6302 22 6 6.4269 -7.5530 0.6570 23 8 6.1460 -8.5155 1.6753 24 14 8.2688 -7.4375 0.4028 25 1 8.5607 -6.4373 -0.6553 26 1 8.9185 -7.0205 1.6714 27 1 8.7957 -8.7630 -0.0100 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6765 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7210 -1.2496 37 1 1.8938 -0.5136 3.9322 38 1 1.8935 1.0277 3.0423 39 1 0.4401 0.0000 3.0423 40 1 4.3770 -1.3930 0.6307 41 1 4.3778 0.1486 1.5204 42 1 4.3774 -1.3924 2.4108 43 1 1.6638 -2.7112 3.5652 44 1 3.1174 -3.2252 2.6757 45 1 0.3806 -4.5516 2.4335 46 1 1.7100 -5.1565 3.4509 47 1 0.4881 -6.5876 1.0814 48 1 1.8171 -7.1930 2.0989 49 1 2.0671 -6.5497 -0.8729 50 1 1.8224 -8.1833 -0.2099 51 1 2.7252 -8.1161 -2.0979 52 1 6.5214 -9.3085 -3.6358 53 1 7.5970 -8.6083 -1.5355 54 1 6.0402 -6.5799 0.9601 55 1 5.2037 -8.6281 1.8608 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12104242_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:30:06 Heat of formation + Delta-G solvation = -184.227054 kcal Electronic energy + Delta-G solvation = -32832.849923 eV Core-core repulsion = 28426.082653 eV Total energy + Delta-G solvation = -4406.767270 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 434.113 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.58527 -39.43843 -38.61556 -37.58320 -37.34091 -36.82500 -33.75108 -32.22409 -31.21797 -30.73581 -29.66252 -29.17657 -29.05889 -27.83870 -27.38123 -26.36199 -24.92851 -23.43850 -22.94673 -22.39476 -20.41402 -19.40767 -18.35743 -18.10897 -17.93514 -17.60443 -17.00620 -16.56776 -16.46463 -16.19515 -15.96126 -15.69205 -15.50229 -15.40947 -15.24921 -14.85262 -14.77873 -14.56889 -14.50331 -14.05350 -13.99655 -13.90639 -13.53399 -13.36919 -13.19920 -13.15269 -13.05852 -12.95885 -12.92907 -12.77551 -12.63508 -12.44271 -12.40272 -12.24974 -12.13050 -11.89008 -11.78782 -11.68617 -11.54719 -11.49251 -11.38374 -11.25214 -11.17513 -11.03868 -10.54068 -10.28859 -10.04544 -9.99554 -9.34989 -0.18569 0.16573 0.47390 1.18429 1.49418 1.51949 1.55849 1.80775 1.94304 2.01504 2.14715 2.36135 2.50336 2.69449 3.53124 3.56835 3.83710 3.90504 3.95890 4.01582 4.08929 4.11963 4.12539 4.15918 4.22651 4.24936 4.34011 4.39676 4.44601 4.48083 4.50417 4.60498 4.63470 4.69618 4.73191 4.75499 4.79276 4.79987 4.81468 4.83093 4.85056 4.85696 4.99539 5.02934 5.08699 5.09141 5.13155 5.20338 5.33761 5.40509 5.43327 5.44228 5.54065 5.60132 5.64574 6.16841 6.30556 6.62409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.382 4.382 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.313 2.687 6 C -0.514 4.514 7 C -0.519 4.519 8 O -0.635 6.635 9 C 0.074 3.926 10 C 0.055 3.945 11 O -0.398 6.398 12 C 0.060 3.940 13 C 0.053 3.947 14 O -0.308 6.308 15 C 0.147 3.853 16 C -0.184 4.184 17 C -0.058 4.058 18 Br -0.042 7.042 19 C -0.126 4.126 20 C -0.085 4.085 21 C -0.142 4.142 22 C -0.086 4.086 23 O -0.548 6.548 24 Si 1.030 2.970 25 H -0.241 1.241 26 H -0.271 1.271 27 H -0.253 1.253 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.100 0.900 51 H 0.152 0.848 52 H 0.153 0.847 53 H 0.151 0.849 54 H 0.082 0.918 55 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.336 0.558 2.886 3.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.425 4.425 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.443 2.557 6 C -0.617 4.617 7 C -0.620 4.620 8 O -0.595 6.595 9 C -0.001 4.001 10 C -0.022 4.022 11 O -0.318 6.318 12 C -0.016 4.016 13 C -0.022 4.022 14 O -0.222 6.222 15 C 0.099 3.901 16 C -0.204 4.204 17 C -0.138 4.138 18 Br 0.044 6.956 19 C -0.146 4.146 20 C -0.104 4.104 21 C -0.143 4.143 22 C -0.194 4.194 23 O -0.354 6.354 24 Si 0.850 3.150 25 H -0.164 1.164 26 H -0.196 1.196 27 H -0.177 1.177 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.118 0.882 51 H 0.170 0.830 52 H 0.170 0.830 53 H 0.169 0.831 54 H 0.100 0.900 55 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.119 0.341 2.073 2.380 hybrid contribution -1.276 0.448 0.214 1.369 sum -2.395 0.789 2.287 3.404 Atomic orbital electron populations 1.21524 0.94108 1.01711 1.01886 1.25915 1.00511 1.02967 1.13086 1.21602 1.01168 0.94710 1.02278 1.21512 1.00766 0.99889 0.97032 0.76244 0.62174 0.52998 0.64280 1.27049 1.06968 1.09768 1.17865 1.27140 1.25952 1.04704 1.04226 1.85388 1.79263 1.46478 1.48354 1.22316 0.99405 0.90774 0.87633 1.22815 0.98315 0.92059 0.88972 1.87986 1.68390 1.26737 1.48711 1.22667 0.98331 0.83492 0.97146 1.23168 0.77798 1.01807 0.99378 1.86105 1.21010 1.77401 1.37679 1.18717 0.90601 0.93289 0.87445 1.21344 1.01488 1.04693 0.92906 1.21739 0.95516 1.03268 0.93289 1.96793 1.80948 1.90009 1.27883 1.21226 0.92776 1.01620 0.99004 1.21178 1.00806 0.96283 0.92127 1.19942 0.91428 1.04394 0.98537 1.25308 1.14103 0.94552 0.85431 1.86657 1.30962 1.61634 1.56187 0.84269 0.70320 0.80523 0.79843 1.16381 1.19579 1.17730 0.91877 0.93401 0.92620 0.92035 0.93152 0.91602 0.92855 0.93342 0.92522 0.90777 0.90424 0.90899 0.91802 0.90491 0.91162 0.88986 0.91802 0.91749 0.90154 0.89136 0.91043 0.91125 0.88166 0.83003 0.82960 0.83139 0.89991 0.77447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.11 7.85 71.98 0.56 0.46 16 2 C -0.38 -0.17 0.53 -10.79 -0.01 -0.18 16 3 C -0.14 0.08 7.85 71.98 0.56 0.65 16 4 C -0.13 -0.32 7.85 71.98 0.56 0.24 16 5 Si 1.31 -2.13 8.45 68.60 0.58 -1.55 16 6 C -0.51 1.35 8.50 113.37 0.96 2.31 16 7 C -0.52 0.04 8.50 113.37 0.96 1.00 16 8 O -0.64 -0.84 8.52 -144.34 -1.23 -2.07 16 9 C 0.07 -0.16 5.50 71.98 0.40 0.24 16 10 C 0.05 -0.14 6.32 71.98 0.45 0.31 16 11 O -0.40 -0.76 10.27 -135.05 -1.39 -2.15 16 12 C 0.06 -0.23 6.32 71.98 0.45 0.23 16 13 C 0.05 -0.15 5.12 71.98 0.37 0.22 16 14 O -0.31 -0.53 9.01 -87.74 -0.79 -1.32 16 15 C 0.15 0.45 6.62 22.50 0.15 0.60 16 16 C -0.18 -0.38 8.78 22.38 0.20 -0.19 16 17 C -0.06 -0.17 6.22 22.30 0.14 -0.03 16 18 Br -0.04 -0.10 33.70 -20.37 -0.69 -0.79 16 19 C -0.13 -0.24 9.78 22.30 0.22 -0.03 16 20 C -0.09 -0.19 8.66 22.25 0.19 0.01 16 21 C -0.14 -0.49 5.28 -19.77 -0.10 -0.59 16 22 C -0.09 -0.23 2.33 71.23 0.17 -0.07 16 23 O -0.55 -2.16 12.65 -148.98 -1.89 -4.04 16 24 Si 1.03 1.65 25.74 68.60 1.77 3.41 16 25 H -0.24 -0.10 7.11 99.48 0.71 0.61 16 26 H -0.27 -1.13 7.11 99.48 0.71 -0.43 16 27 H -0.25 -0.47 6.74 99.48 0.67 0.20 16 28 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 29 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.05 0.08 7.96 -2.39 -0.02 0.07 16 31 H 0.06 -0.10 7.79 -2.38 -0.02 -0.12 16 32 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 33 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 34 H 0.05 0.20 7.97 -2.39 -0.02 0.18 16 35 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 36 H 0.06 0.09 7.79 -2.39 -0.02 0.07 16 37 H 0.07 -0.30 7.48 -2.39 -0.02 -0.31 16 38 H 0.08 -0.23 7.79 -2.38 -0.02 -0.25 16 39 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 40 H 0.06 0.12 7.79 -2.39 -0.02 0.10 16 41 H 0.08 -0.08 7.79 -2.38 -0.02 -0.10 16 42 H 0.07 -0.07 7.48 -2.39 -0.02 -0.08 16 43 H 0.09 -0.67 7.21 -2.39 -0.02 -0.68 16 44 H 0.06 -0.16 7.21 -2.38 -0.02 -0.18 16 45 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 47 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 48 H 0.07 -0.42 8.14 -2.38 -0.02 -0.44 16 49 H 0.07 -0.13 7.66 -2.39 -0.02 -0.15 16 50 H 0.10 -0.72 7.66 -2.39 -0.02 -0.73 16 51 H 0.15 -0.19 6.30 -2.91 -0.02 -0.21 16 52 H 0.15 -0.23 8.06 -2.91 -0.02 -0.26 16 53 H 0.15 -0.14 4.88 -2.91 -0.01 -0.15 16 54 H 0.08 0.17 7.83 -2.39 -0.02 0.15 16 55 H 0.38 -0.13 8.61 -74.06 -0.64 -0.77 16 Total: 0.00 -12.18 456.94 3.56 -8.63 By element: Atomic # 1 Polarization: -6.23 SS G_CDS: 0.94 Total: -5.29 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 6.25 Total: 5.17 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -5.29 Total: -9.59 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: 2.35 Total: 1.86 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -0.69 Total: -0.79 kcal Total: -12.18 3.56 -8.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12104242_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.599 kcal (2) G-P(sol) polarization free energy of solvation -12.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds