Wall clock time and date at job start Tue Mar 9 2021 13:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86292 * 109.47424 * 2 1 4 4 C 1.86300 * 109.46850 * 239.99937 * 2 1 3 5 5 C 1.86804 * 109.47095 * 120.00301 * 2 1 3 6 6 C 1.38236 * 119.99833 * 89.99560 * 5 2 1 7 7 C 1.38241 * 119.99639 * 180.02562 * 6 5 2 8 8 C 1.38238 * 119.99927 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99795 * 179.97438 * 8 7 6 10 10 O 1.42899 * 109.47256 * 89.99926 * 9 8 7 11 11 C 1.35896 * 117.00275 * 179.97438 * 10 9 8 12 12 C 1.38692 * 120.04923 * 0.02578 * 11 10 9 13 13 C 1.38252 * 119.93504 * 179.97438 * 12 11 10 14 14 Br 1.89102 * 119.98399 * 179.97438 * 13 12 11 15 15 C 1.38339 * 120.03692 * 0.02562 * 13 12 11 16 16 C 1.38269 * 120.09687 * 359.74252 * 15 13 12 17 17 C 1.38133 * 120.06850 * 0.51500 * 16 15 13 18 18 C 1.50697 * 120.02063 * 179.76875 * 17 16 15 19 19 O 1.42906 * 109.46831 * 254.72253 * 18 17 16 20 20 Si 1.86300 * 109.47007 * 14.71642 * 18 17 16 21 21 H 1.48503 * 109.46942 * 60.00611 * 20 18 17 22 22 H 1.48503 * 109.47276 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47372 * 300.00074 * 20 18 17 24 24 C 1.38238 * 119.99982 * 0.25409 * 8 7 6 25 25 C 1.38230 * 119.99720 * 359.49183 * 24 8 7 26 26 H 1.09000 * 109.46989 * 299.99992 * 1 2 3 27 27 H 1.08996 * 109.47410 * 59.99684 * 1 2 3 28 28 H 1.08999 * 109.47327 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47120 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.47509 * 300.00247 * 3 2 1 31 31 H 1.09000 * 109.47031 * 60.00034 * 3 2 1 32 32 H 1.08999 * 109.47321 * 300.00206 * 4 2 1 33 33 H 1.08999 * 109.47427 * 60.00403 * 4 2 1 34 34 H 1.09005 * 109.47257 * 180.02562 * 4 2 1 35 35 H 1.07996 * 120.00148 * 0.02562 * 6 5 2 36 36 H 1.08001 * 119.99802 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.46897 * 329.99929 * 9 8 7 38 38 H 1.08997 * 109.46952 * 210.00531 * 9 8 7 39 39 H 1.08007 * 120.03306 * 359.95093 * 12 11 10 40 40 H 1.07999 * 119.95178 * 180.02562 * 15 13 12 41 41 H 1.08000 * 119.96715 * 180.25162 * 16 15 13 42 42 H 1.09000 * 109.47374 * 134.71826 * 18 17 16 43 43 H 0.96693 * 114.00047 * 60.00191 * 19 18 17 44 44 H 1.07996 * 119.99527 * 179.72126 * 24 8 7 45 45 H 1.08003 * 119.99495 * 180.23420 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7563 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8807 1.5252 6 6 2.7159 -2.2433 1.4909 7 6 3.1762 -2.8951 2.6198 8 6 3.4057 -2.1843 3.7830 9 6 3.9069 -2.8950 5.0138 10 8 5.3359 -2.8951 5.0150 11 6 5.9519 -3.5003 6.0643 12 6 5.1967 -4.0823 7.0715 13 6 5.8259 -4.6978 8.1376 14 35 4.7974 -5.4912 9.5120 15 6 7.2074 -4.7327 8.2001 16 6 7.9617 -4.1571 7.1944 17 6 7.3375 -3.5364 6.1300 18 6 8.1607 -2.9048 5.0371 19 8 8.1279 -1.4830 5.1773 20 14 9.9214 -3.5007 5.1627 21 1 9.9554 -4.9782 5.0170 22 1 10.7328 -2.8779 4.0861 23 1 10.4794 -3.1207 6.4852 24 6 3.1698 -0.8226 3.8189 25 6 2.7146 -0.1701 2.6886 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5741 1.7563 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1205 -1.9059 -1.5212 33 1 2.1206 -0.3644 -2.4111 34 1 3.5739 -0.8787 -1.5210 35 1 2.5363 -2.7986 0.5822 36 1 3.3558 -3.9597 2.5931 37 1 3.5435 -3.9225 5.0133 38 1 3.5428 -2.3813 5.9035 39 1 4.1180 -4.0544 7.0232 40 1 7.6975 -5.2142 9.0334 41 1 9.0401 -4.1891 7.2433 42 1 7.7511 -3.1838 4.0662 43 1 8.4783 -1.1627 6.0196 44 1 3.3448 -0.2682 4.7290 45 1 2.5340 0.8944 2.7156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_12104242_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:17 Heat of formation + Delta-G solvation = -61.942405 kcal Electronic energy + Delta-G solvation = -25368.773286 eV Core-core repulsion = 21713.918974 eV Total energy + Delta-G solvation = -3654.854312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 394.051 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59310 -40.09803 -38.60986 -37.58738 -33.79710 -33.01871 -31.88009 -31.25208 -30.81124 -29.57564 -28.44158 -28.41733 -27.43580 -26.36138 -23.81256 -23.48189 -22.64921 -21.86026 -19.37056 -18.33199 -17.65890 -17.21545 -17.16081 -16.68081 -16.16289 -16.01167 -15.72279 -15.40067 -15.24262 -14.74893 -14.57898 -14.36626 -14.20222 -14.12933 -14.02777 -13.89494 -13.83858 -13.50393 -13.34076 -13.26146 -13.25790 -13.10213 -12.85175 -12.55922 -12.50413 -12.19972 -11.98738 -11.92000 -11.68686 -11.51864 -11.33399 -11.04575 -10.90562 -10.83381 -10.38302 -9.98961 -9.77230 -9.68888 -9.31613 -0.16731 0.16554 0.19246 0.51781 0.55553 1.12041 1.37380 1.49564 1.70085 1.84756 1.86936 1.89191 2.21333 2.37821 2.54282 3.02673 3.47154 3.51585 3.68592 3.74028 3.76816 3.90727 4.00088 4.10075 4.20260 4.22719 4.33236 4.40484 4.50821 4.67244 4.67935 4.70062 4.71574 4.75095 4.75847 4.76324 4.77181 4.88120 5.00352 5.04140 5.11012 5.15605 5.40055 5.43116 5.45900 5.50475 5.53376 5.62037 5.62695 6.11352 6.24024 6.59816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.092 4.092 7 C -0.106 4.106 8 C -0.088 4.088 9 C 0.097 3.903 10 O -0.289 6.289 11 C 0.166 3.834 12 C -0.185 4.185 13 C -0.045 4.045 14 Br -0.041 7.041 15 C -0.124 4.124 16 C -0.083 4.083 17 C -0.139 4.139 18 C -0.070 4.070 19 O -0.530 6.530 20 Si 0.946 3.054 21 H -0.247 1.247 22 H -0.250 1.250 23 H -0.250 1.250 24 C -0.103 4.103 25 C -0.091 4.091 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.373 0.627 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 0.297 -0.790 0.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.402 4.402 6 C -0.110 4.110 7 C -0.124 4.124 8 C -0.088 4.088 9 C 0.022 3.978 10 O -0.202 6.202 11 C 0.119 3.881 12 C -0.206 4.206 13 C -0.125 4.125 14 Br 0.045 6.955 15 C -0.144 4.144 16 C -0.101 4.101 17 C -0.141 4.141 18 C -0.181 4.181 19 O -0.335 6.335 20 Si 0.768 3.232 21 H -0.171 1.171 22 H -0.174 1.174 23 H -0.174 1.174 24 C -0.121 4.121 25 C -0.109 4.109 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.136 0.864 43 H 0.219 0.781 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.153 -0.272 -0.929 0.980 hybrid contribution -0.227 0.059 0.671 0.711 sum -0.380 -0.213 -0.258 0.506 Atomic orbital electron populations 1.26122 1.20435 1.04572 1.04509 0.78191 0.66831 0.66172 0.63711 1.26136 1.06547 1.18516 1.04560 1.26135 1.06525 1.08024 1.15057 1.27476 1.02979 0.99513 1.10203 1.21069 0.97555 0.94673 0.97683 1.21134 0.98848 0.99842 0.92589 1.19389 1.00964 0.94198 0.94251 1.21716 0.78637 1.00481 0.96958 1.86280 1.20785 1.72098 1.41012 1.18622 0.91287 0.91506 0.86727 1.21237 1.00752 1.03564 0.95031 1.21622 0.94538 1.01282 0.95028 1.96808 1.70622 1.80733 1.47315 1.20987 0.91545 1.01710 1.00163 1.20997 1.00198 0.96271 0.92681 1.19822 0.91617 1.03743 0.98874 1.24867 1.08765 0.84664 0.99777 1.86591 1.86940 1.18296 1.41645 0.85780 0.75285 0.80851 0.81241 1.17076 1.17389 1.17415 1.21137 0.98519 0.93501 0.98941 1.21073 0.97486 0.99744 0.92595 0.91164 0.91014 0.91175 0.90988 0.90946 0.91169 0.91185 0.90940 0.91005 0.85901 0.86171 0.90921 0.90881 0.84167 0.84315 0.84362 0.86351 0.78092 0.86129 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.68 8.65 101.05 0.87 1.55 16 2 Si 1.06 -2.51 12.32 -169.99 -2.09 -4.61 16 3 C -0.45 0.71 8.53 101.05 0.86 1.57 16 4 C -0.45 0.74 8.53 101.05 0.86 1.60 16 5 C -0.36 0.00 4.59 -39.58 -0.18 -0.18 16 6 C -0.09 -0.04 9.29 -39.58 -0.37 -0.41 16 7 C -0.11 -0.12 9.70 -39.58 -0.38 -0.50 16 8 C -0.09 -0.13 5.51 -104.62 -0.58 -0.70 16 9 C 0.10 0.05 4.87 36.01 0.18 0.22 16 10 O -0.29 -0.69 9.45 -19.41 -0.18 -0.87 16 11 C 0.17 0.29 6.66 -39.22 -0.26 0.03 16 12 C -0.19 -0.20 8.78 -39.41 -0.35 -0.55 16 13 C -0.04 -0.05 6.22 -39.54 -0.25 -0.30 16 14 Br -0.04 -0.04 33.70 -68.01 -2.29 -2.33 16 15 C -0.12 -0.04 9.78 -39.53 -0.39 -0.43 16 16 C -0.08 0.00 8.66 -39.61 -0.34 -0.34 16 17 C -0.14 -0.14 5.27 -104.47 -0.55 -0.69 16 18 C -0.07 -0.04 2.38 36.00 0.09 0.05 16 19 O -0.53 -0.72 12.88 -35.23 -0.45 -1.17 16 20 Si 0.95 -0.50 25.48 -169.99 -4.33 -4.84 16 21 H -0.25 0.00 7.11 56.52 0.40 0.40 16 22 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 23 H -0.25 0.28 6.74 56.52 0.38 0.66 16 24 C -0.10 -0.14 9.70 -39.58 -0.38 -0.52 16 25 C -0.09 -0.05 9.29 -39.59 -0.37 -0.42 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 32 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 35 H 0.12 -0.18 7.43 -52.49 -0.39 -0.57 16 36 H 0.12 -0.04 8.06 -52.49 -0.42 -0.46 16 37 H 0.07 -0.06 7.61 -51.93 -0.39 -0.46 16 38 H 0.07 -0.04 7.60 -51.93 -0.39 -0.44 16 39 H 0.14 -0.03 6.30 -52.48 -0.33 -0.36 16 40 H 0.14 -0.17 8.06 -52.49 -0.42 -0.59 16 41 H 0.14 -0.24 4.88 -52.49 -0.26 -0.50 16 42 H 0.12 0.10 7.83 -51.93 -0.41 -0.30 16 43 H 0.37 -0.81 8.70 45.56 0.40 -0.42 16 44 H 0.12 0.02 8.06 -52.49 -0.42 -0.40 16 45 H 0.12 -0.16 7.43 -52.48 -0.39 -0.55 16 LS Contribution 394.27 15.07 5.94 5.94 Total: 0.00 -5.52 394.27 -10.89 -16.42 By element: Atomic # 1 Polarization: -2.57 SS G_CDS: -5.94 Total: -8.51 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.54 Total: -0.03 kcal Atomic # 8 Polarization: -1.41 SS G_CDS: -0.64 Total: -2.04 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: -6.43 Total: -9.44 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.29 Total: -2.33 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -5.52 -10.89 -16.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12104242_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.525 kcal (2) G-P(sol) polarization free energy of solvation -5.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds