Wall clock time and date at job start Tue Mar 9 2021 13:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47529 * 2 1 4 4 C 1.53006 * 109.46746 * 240.00472 * 2 1 3 5 5 Si 1.86297 * 109.47338 * 120.00608 * 2 1 3 6 6 C 1.86305 * 109.46890 * 299.99572 * 5 2 1 7 7 C 1.86297 * 109.47164 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.47152 * 59.99619 * 5 2 1 9 9 C 1.42906 * 113.99635 * 180.02562 * 8 5 2 10 10 C 1.53006 * 109.46692 * 179.97438 * 9 8 5 11 11 O 1.42901 * 109.46998 * 65.00037 * 10 9 8 12 12 C 1.35946 * 116.99755 * 179.97438 * 11 10 9 13 13 C 1.38681 * 120.03217 * 0.02562 * 12 11 10 14 14 C 1.38169 * 119.97280 * 179.97438 * 13 12 11 15 15 C 1.38439 * 120.02798 * 359.97429 * 14 13 12 16 16 F 1.35101 * 119.97138 * 179.97438 * 15 14 13 17 17 C 1.38480 * 120.05793 * 359.79567 * 15 14 13 18 18 C 1.38130 * 120.02920 * 0.45935 * 17 15 14 19 19 C 1.50701 * 120.01362 * 179.79588 * 18 17 15 20 20 O 1.42895 * 109.47079 * 254.72679 * 19 18 17 21 21 Si 1.86301 * 109.47149 * 14.72175 * 19 18 17 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 H 1.09003 * 109.46620 * 299.99726 * 1 2 3 26 26 H 1.08998 * 109.47297 * 59.99720 * 1 2 3 27 27 H 1.09004 * 109.47756 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47454 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47060 * 300.00425 * 3 2 1 30 30 H 1.09002 * 109.46782 * 59.99946 * 3 2 1 31 31 H 1.09000 * 109.47090 * 299.99704 * 4 2 1 32 32 H 1.08998 * 109.47379 * 59.99858 * 4 2 1 33 33 H 1.09002 * 109.47234 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46852 * 179.97438 * 6 5 2 35 35 H 1.08990 * 109.47203 * 300.00083 * 6 5 2 36 36 H 1.09003 * 109.47038 * 60.00169 * 6 5 2 37 37 H 1.09002 * 109.47372 * 299.99593 * 7 5 2 38 38 H 1.08994 * 109.47627 * 60.00007 * 7 5 2 39 39 H 1.09003 * 109.47022 * 180.02562 * 7 5 2 40 40 H 1.09002 * 109.47049 * 60.00290 * 9 8 5 41 41 H 1.08994 * 109.47061 * 299.99788 * 9 8 5 42 42 H 1.08992 * 109.47017 * 305.00187 * 10 9 8 43 43 H 1.08997 * 109.46567 * 184.99622 * 10 9 8 44 44 H 1.08003 * 120.01205 * 359.97438 * 13 12 11 45 45 H 1.07999 * 119.99014 * 179.97438 * 14 13 12 46 46 H 1.08000 * 119.98197 * 180.25620 * 17 15 14 47 47 H 1.09001 * 109.47380 * 134.72076 * 19 18 17 48 48 H 0.96708 * 113.99763 * 299.99687 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1510 -0.8784 1.5210 6 6 1.5301 -0.0002 3.0422 7 6 4.0140 -0.8790 1.5206 8 8 1.6073 -2.4161 1.5209 9 6 2.0286 -3.1816 2.6518 10 6 1.4627 -4.5993 2.5473 11 8 2.0309 -5.2566 1.4129 12 6 1.6313 -6.5341 1.1755 13 6 0.7111 -7.1412 2.0170 14 6 0.3054 -8.4395 1.7743 15 6 0.8165 -9.1341 0.6914 16 9 0.4194 -10.4037 0.4555 17 6 1.7318 -8.5275 -0.1524 18 6 2.1431 -7.2315 0.0910 19 6 3.1427 -6.5733 -0.8248 20 8 4.4159 -6.5173 -0.1786 21 14 3.2877 -7.5606 -2.3980 22 1 1.9645 -7.6190 -3.0696 23 1 3.7415 -8.9379 -2.0780 24 1 4.2731 -6.9124 -3.3003 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7216 -1.2492 34 1 1.8931 -0.5144 3.9322 35 1 1.8934 1.0274 3.0423 36 1 0.4401 -0.0001 3.0423 37 1 4.3770 -1.3931 0.6305 38 1 4.3777 0.1484 1.5204 39 1 4.3773 -1.3934 2.4103 40 1 1.6637 -2.7115 3.5650 41 1 3.1174 -3.2254 2.6756 42 1 0.3797 -4.5507 2.4343 43 1 1.7092 -5.1563 3.4512 44 1 0.3119 -6.5993 2.8616 45 1 -0.4109 -8.9126 2.4297 46 1 2.1267 -9.0691 -0.9992 47 1 2.8096 -5.5624 -1.0598 48 1 4.4152 -6.0175 0.6493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_12398896_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:42 Heat of formation + Delta-G solvation = -196.227318 kcal Electronic energy + Delta-G solvation = -27275.237385 eV Core-core repulsion = 23368.071202 eV Total energy + Delta-G solvation = -3907.166183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.74961 -41.47149 -39.01813 -37.66266 -37.32501 -36.87776 -32.93718 -31.51843 -30.03392 -29.42188 -29.15173 -27.90569 -27.43292 -26.83090 -24.98736 -22.91146 -22.63724 -20.46913 -19.52457 -18.59292 -18.22348 -18.17862 -17.53011 -16.78750 -16.47437 -16.33802 -16.08943 -15.96347 -15.61788 -15.42955 -15.38459 -14.91366 -14.83435 -14.74906 -14.35516 -14.04887 -13.96400 -13.68100 -13.58750 -13.48763 -13.31926 -13.26730 -12.99592 -12.96864 -12.89681 -12.59491 -12.44735 -12.19511 -12.05315 -11.85894 -11.75771 -11.74055 -11.62206 -11.42221 -11.16390 -10.99661 -10.46104 -10.18801 -10.12778 -9.13196 -0.01118 0.13715 1.25093 1.34020 1.56478 1.60381 1.66147 1.96050 1.99681 2.02824 2.34399 2.41970 3.22334 3.46518 3.58737 3.72532 3.83566 3.92797 3.98201 4.03861 4.07298 4.07524 4.09262 4.12868 4.28595 4.42741 4.46714 4.56600 4.58724 4.62620 4.66067 4.68601 4.71925 4.76813 4.81999 4.95919 4.99625 5.03776 5.06520 5.07187 5.11557 5.13036 5.25068 5.30322 5.37250 5.44675 5.47119 5.54567 5.61108 6.22211 6.63225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.288 2.712 6 C -0.513 4.513 7 C -0.511 4.511 8 O -0.619 6.619 9 C 0.086 3.914 10 C 0.055 3.945 11 O -0.300 6.300 12 C 0.136 3.864 13 C -0.179 4.179 14 C -0.108 4.108 15 C 0.069 3.931 16 F -0.137 7.137 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.083 4.083 20 O -0.535 6.535 21 Si 1.009 2.991 22 H -0.247 1.247 23 H -0.251 1.251 24 H -0.253 1.253 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.084 0.916 48 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.917 3.011 3.339 4.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.419 2.581 6 C -0.614 4.614 7 C -0.613 4.613 8 O -0.578 6.578 9 C 0.010 3.990 10 C -0.020 4.020 11 O -0.213 6.213 12 C 0.090 3.910 13 C -0.197 4.197 14 C -0.127 4.127 15 C 0.049 3.951 16 F -0.116 7.116 17 C -0.137 4.137 18 C -0.118 4.118 19 C -0.191 4.191 20 O -0.341 6.341 21 Si 0.828 3.172 22 H -0.170 1.170 23 H -0.175 1.175 24 H -0.177 1.177 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.159 0.841 45 H 0.159 0.841 46 H 0.160 0.840 47 H 0.102 0.898 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.710 2.086 1.818 2.856 hybrid contribution -0.366 0.867 1.426 1.709 sum -1.076 2.952 3.244 4.516 Atomic orbital electron populations 1.21511 0.93854 1.01959 1.01778 1.25781 1.00635 1.02615 1.12760 1.21557 1.00803 0.94915 1.02140 1.21511 1.00654 1.00274 0.96687 0.76709 0.63108 0.53281 0.64992 1.27056 1.07021 1.09655 1.17712 1.27028 1.24919 1.04740 1.04586 1.85414 1.79132 1.46029 1.47198 1.22088 0.99407 0.89627 0.87828 1.23083 0.99349 0.91982 0.87584 1.86114 1.64689 1.23099 1.47422 1.18759 0.93921 0.84276 0.94073 1.21137 1.00797 0.96056 1.01755 1.21006 1.00364 0.94497 0.96784 1.17453 0.99380 0.80627 0.97611 1.91524 1.89604 1.36197 1.94251 1.20968 0.97747 0.94513 1.00499 1.19445 1.01359 0.93792 0.97253 1.25204 0.84079 1.05843 1.03951 1.86698 1.28169 1.77823 1.41402 0.84544 0.80851 0.78457 0.73305 1.17005 1.17529 1.17651 0.92762 0.92782 0.92198 0.92491 0.92487 0.92559 0.92088 0.92816 0.92657 0.91522 0.90614 0.90861 0.90691 0.90743 0.91508 0.90343 0.91289 0.90495 0.90407 0.84112 0.84069 0.83954 0.89810 0.78297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.06 7.85 37.16 0.29 0.35 16 2 C -0.37 0.31 0.53 -90.62 -0.05 0.26 16 3 C -0.14 0.14 7.85 37.16 0.29 0.43 16 4 C -0.13 0.03 7.85 37.16 0.29 0.32 16 5 Si 1.29 -2.61 8.45 -169.99 -1.44 -4.04 16 6 C -0.51 0.97 8.50 101.05 0.86 1.82 16 7 C -0.51 0.74 8.50 101.05 0.86 1.60 16 8 O -0.62 0.62 8.52 -40.08 -0.34 0.28 16 9 C 0.09 -0.25 5.51 37.16 0.20 -0.05 16 10 C 0.06 -0.15 5.12 37.16 0.19 0.04 16 11 O -0.30 0.05 9.00 -24.42 -0.22 -0.17 16 12 C 0.14 0.09 6.62 -39.24 -0.26 -0.17 16 13 C -0.18 0.09 9.04 -39.44 -0.36 -0.27 16 14 C -0.11 -0.03 10.02 -39.53 -0.40 -0.43 16 15 C 0.07 0.15 7.30 -39.42 -0.29 -0.14 16 16 F -0.14 -0.45 17.27 2.25 0.04 -0.41 16 17 C -0.12 -0.23 8.64 -39.53 -0.34 -0.57 16 18 C -0.12 -0.18 5.28 -104.48 -0.55 -0.73 16 19 C -0.08 -0.09 2.33 36.01 0.08 -0.01 16 20 O -0.54 -0.92 12.65 -35.23 -0.45 -1.36 16 21 Si 1.01 1.07 25.73 -169.99 -4.37 -3.31 16 22 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 23 H -0.25 -0.42 6.74 56.52 0.38 -0.04 16 24 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 25 H 0.05 -0.06 7.79 -51.93 -0.40 -0.47 16 26 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 27 H 0.06 -0.01 7.96 -51.93 -0.41 -0.43 16 28 H 0.06 -0.09 7.79 -51.93 -0.40 -0.50 16 29 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 30 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 31 H 0.06 0.01 7.97 -51.93 -0.41 -0.41 16 32 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 33 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 34 H 0.07 -0.17 7.48 -51.93 -0.39 -0.56 16 35 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 36 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 37 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 38 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 39 H 0.07 -0.13 7.48 -51.93 -0.39 -0.52 16 40 H 0.08 -0.40 7.21 -51.93 -0.37 -0.77 16 41 H 0.07 -0.26 7.21 -51.93 -0.37 -0.64 16 42 H 0.08 -0.23 7.66 -51.93 -0.40 -0.63 16 43 H 0.08 -0.37 7.66 -51.93 -0.40 -0.77 16 44 H 0.14 -0.43 6.30 -52.48 -0.33 -0.76 16 45 H 0.14 -0.22 8.06 -52.49 -0.42 -0.65 16 46 H 0.14 0.16 4.89 -52.49 -0.26 -0.10 16 47 H 0.08 0.02 7.83 -51.93 -0.41 -0.38 16 48 H 0.37 -0.24 8.60 45.56 0.39 0.15 16 LS Contribution 386.56 15.07 5.83 5.83 Total: 0.00 -4.70 386.56 -7.62 -12.32 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: -7.49 Total: -11.60 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 0.83 Total: 2.47 kcal Atomic # 8 Polarization: -0.25 SS G_CDS: -1.01 Total: -1.26 kcal Atomic # 9 Polarization: -0.45 SS G_CDS: 0.04 Total: -0.41 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: -5.81 Total: -7.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -4.70 -7.62 -12.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.911 kcal (2) G-P(sol) polarization free energy of solvation -4.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds