Wall clock time and date at job start Tue Mar 9 2021 13:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47529 * 2 1 4 4 C 1.53006 * 109.46746 * 240.00472 * 2 1 3 5 5 Si 1.86297 * 109.47338 * 120.00608 * 2 1 3 6 6 C 1.86305 * 109.46890 * 299.99572 * 5 2 1 7 7 C 1.86297 * 109.47164 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.47152 * 59.99619 * 5 2 1 9 9 C 1.42906 * 113.99635 * 180.02562 * 8 5 2 10 10 C 1.53006 * 109.46692 * 179.97438 * 9 8 5 11 11 O 1.42901 * 109.46998 * 65.00037 * 10 9 8 12 12 C 1.35946 * 116.99755 * 179.97438 * 11 10 9 13 13 C 1.38681 * 120.03217 * 0.02562 * 12 11 10 14 14 C 1.38169 * 119.97280 * 179.97438 * 13 12 11 15 15 C 1.38439 * 120.02798 * 359.97429 * 14 13 12 16 16 F 1.35101 * 119.97138 * 179.97438 * 15 14 13 17 17 C 1.38480 * 120.05793 * 359.79567 * 15 14 13 18 18 C 1.38130 * 120.02920 * 0.45935 * 17 15 14 19 19 C 1.50701 * 120.01362 * 179.79588 * 18 17 15 20 20 O 1.42895 * 109.47079 * 254.72679 * 19 18 17 21 21 Si 1.86301 * 109.47149 * 14.72175 * 19 18 17 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 H 1.09003 * 109.46620 * 299.99726 * 1 2 3 26 26 H 1.08998 * 109.47297 * 59.99720 * 1 2 3 27 27 H 1.09004 * 109.47756 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47454 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47060 * 300.00425 * 3 2 1 30 30 H 1.09002 * 109.46782 * 59.99946 * 3 2 1 31 31 H 1.09000 * 109.47090 * 299.99704 * 4 2 1 32 32 H 1.08998 * 109.47379 * 59.99858 * 4 2 1 33 33 H 1.09002 * 109.47234 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46852 * 179.97438 * 6 5 2 35 35 H 1.08990 * 109.47203 * 300.00083 * 6 5 2 36 36 H 1.09003 * 109.47038 * 60.00169 * 6 5 2 37 37 H 1.09002 * 109.47372 * 299.99593 * 7 5 2 38 38 H 1.08994 * 109.47627 * 60.00007 * 7 5 2 39 39 H 1.09003 * 109.47022 * 180.02562 * 7 5 2 40 40 H 1.09002 * 109.47049 * 60.00290 * 9 8 5 41 41 H 1.08994 * 109.47061 * 299.99788 * 9 8 5 42 42 H 1.08992 * 109.47017 * 305.00187 * 10 9 8 43 43 H 1.08997 * 109.46567 * 184.99622 * 10 9 8 44 44 H 1.08003 * 120.01205 * 359.97438 * 13 12 11 45 45 H 1.07999 * 119.99014 * 179.97438 * 14 13 12 46 46 H 1.08000 * 119.98197 * 180.25620 * 17 15 14 47 47 H 1.09001 * 109.47380 * 134.72076 * 19 18 17 48 48 H 0.96708 * 113.99763 * 299.99687 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1510 -0.8784 1.5210 6 6 1.5301 -0.0002 3.0422 7 6 4.0140 -0.8790 1.5206 8 8 1.6073 -2.4161 1.5209 9 6 2.0286 -3.1816 2.6518 10 6 1.4627 -4.5993 2.5473 11 8 2.0309 -5.2566 1.4129 12 6 1.6313 -6.5341 1.1755 13 6 0.7111 -7.1412 2.0170 14 6 0.3054 -8.4395 1.7743 15 6 0.8165 -9.1341 0.6914 16 9 0.4194 -10.4037 0.4555 17 6 1.7318 -8.5275 -0.1524 18 6 2.1431 -7.2315 0.0910 19 6 3.1427 -6.5733 -0.8248 20 8 4.4159 -6.5173 -0.1786 21 14 3.2877 -7.5606 -2.3980 22 1 1.9645 -7.6190 -3.0696 23 1 3.7415 -8.9379 -2.0780 24 1 4.2731 -6.9124 -3.3003 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7216 -1.2492 34 1 1.8931 -0.5144 3.9322 35 1 1.8934 1.0274 3.0423 36 1 0.4401 -0.0001 3.0423 37 1 4.3770 -1.3931 0.6305 38 1 4.3777 0.1484 1.5204 39 1 4.3773 -1.3934 2.4103 40 1 1.6637 -2.7115 3.5650 41 1 3.1174 -3.2254 2.6756 42 1 0.3797 -4.5507 2.4343 43 1 1.7092 -5.1563 3.4512 44 1 0.3119 -6.5993 2.8616 45 1 -0.4109 -8.9126 2.4297 46 1 2.1267 -9.0691 -0.9992 47 1 2.8096 -5.5624 -1.0598 48 1 4.4152 -6.0175 0.6493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12398896_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:41 Heat of formation + Delta-G solvation = -187.888631 kcal Electronic energy + Delta-G solvation = -27274.875793 eV Core-core repulsion = 23368.071202 eV Total energy + Delta-G solvation = -3906.804591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.89985 -41.42857 -38.92050 -37.56518 -37.34522 -36.80343 -32.94860 -31.38599 -29.94792 -29.26334 -29.03011 -27.82295 -27.35324 -26.87291 -24.85593 -22.85917 -22.60584 -20.39359 -19.45850 -18.65019 -18.21823 -18.01513 -17.58660 -16.77162 -16.42238 -16.36945 -16.00277 -15.88972 -15.56968 -15.40546 -15.38084 -14.85229 -14.81656 -14.71156 -14.31424 -13.98716 -13.91713 -13.58940 -13.46125 -13.33323 -13.22017 -13.14402 -12.93542 -12.92044 -12.81673 -12.51348 -12.38037 -12.28359 -11.94036 -11.88186 -11.73139 -11.67305 -11.48463 -11.28723 -11.15972 -11.06587 -10.27756 -10.20628 -10.02908 -9.14576 -0.02477 0.09904 1.16062 1.45965 1.47964 1.56277 1.81790 1.90783 2.11148 2.17583 2.40102 2.50918 3.17820 3.48891 3.60396 3.89623 3.94294 4.04013 4.12353 4.13679 4.14447 4.18332 4.25113 4.36758 4.47437 4.48831 4.58151 4.66162 4.74831 4.78354 4.81278 4.82554 4.83155 4.84677 4.85020 5.00114 5.01797 5.03944 5.10780 5.11204 5.12830 5.22293 5.36250 5.42965 5.45170 5.51344 5.60436 5.63882 5.68375 6.31912 6.66196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.387 4.387 3 C -0.141 4.141 4 C -0.136 4.136 5 Si 1.324 2.676 6 C -0.518 4.518 7 C -0.520 4.520 8 O -0.636 6.636 9 C 0.073 3.927 10 C 0.044 3.956 11 O -0.309 6.309 12 C 0.136 3.864 13 C -0.174 4.174 14 C -0.105 4.105 15 C 0.044 3.956 16 F -0.150 7.150 17 C -0.131 4.131 18 C -0.132 4.132 19 C -0.080 4.080 20 O -0.548 6.548 21 Si 1.023 2.977 22 H -0.243 1.243 23 H -0.264 1.264 24 H -0.266 1.266 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.171 0.829 45 H 0.160 0.840 46 H 0.141 0.859 47 H 0.091 0.909 48 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 3.682 5.175 6.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.429 4.429 3 C -0.198 4.198 4 C -0.193 4.193 5 Si 1.453 2.547 6 C -0.620 4.620 7 C -0.621 4.621 8 O -0.596 6.596 9 C -0.002 4.002 10 C -0.030 4.030 11 O -0.222 6.222 12 C 0.090 3.910 13 C -0.193 4.193 14 C -0.124 4.124 15 C 0.025 3.975 16 F -0.129 7.129 17 C -0.150 4.150 18 C -0.133 4.133 19 C -0.189 4.189 20 O -0.355 6.355 21 Si 0.844 3.156 22 H -0.166 1.166 23 H -0.189 1.189 24 H -0.191 1.191 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.121 0.879 44 H 0.188 0.812 45 H 0.178 0.822 46 H 0.158 0.842 47 H 0.109 0.891 48 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.045 2.771 3.645 4.696 hybrid contribution -0.251 0.704 0.868 1.145 sum -1.296 3.475 4.512 5.841 Atomic orbital electron populations 1.21530 0.94284 1.01717 1.01760 1.26002 1.00386 1.02967 1.13502 1.21602 1.01201 0.94866 1.02141 1.21530 1.00905 1.00000 0.96912 0.76043 0.62134 0.52717 0.63798 1.27091 1.06960 1.09792 1.18113 1.27142 1.25680 1.04758 1.04541 1.85409 1.79381 1.46517 1.48244 1.22402 1.00165 0.89480 0.88184 1.23392 0.99652 0.92251 0.87704 1.86117 1.64913 1.22614 1.48603 1.18852 0.93749 0.84658 0.93767 1.21452 0.99967 0.95705 1.02134 1.21271 1.00176 0.94753 0.96189 1.17717 1.00457 0.80528 0.98834 1.91484 1.89843 1.37066 1.94472 1.21043 0.98202 0.94969 1.00790 1.19495 1.01902 0.93828 0.98057 1.25142 0.83922 1.06071 1.03725 1.86664 1.28562 1.78182 1.42099 0.84353 0.80424 0.77547 0.73246 1.16637 1.18889 1.19058 0.91940 0.93673 0.92517 0.91954 0.93394 0.91698 0.92568 0.93623 0.92286 0.90498 0.90627 0.91007 0.91512 0.90726 0.90782 0.87854 0.90519 0.90051 0.87904 0.81186 0.82199 0.84175 0.89129 0.77193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.07 7.85 71.98 0.56 0.64 16 2 C -0.39 0.55 0.53 -10.79 -0.01 0.54 16 3 C -0.14 0.26 7.85 71.98 0.56 0.83 16 4 C -0.14 -0.06 7.85 71.98 0.56 0.50 16 5 Si 1.32 -6.33 8.45 68.60 0.58 -5.75 16 6 C -0.52 2.69 8.50 113.37 0.96 3.66 16 7 C -0.52 1.81 8.50 113.37 0.96 2.77 16 8 O -0.64 1.92 8.52 -144.34 -1.23 0.69 16 9 C 0.07 -0.56 5.51 71.98 0.40 -0.16 16 10 C 0.04 -0.33 5.12 71.98 0.37 0.04 16 11 O -0.31 0.43 9.00 -88.30 -0.80 -0.37 16 12 C 0.14 0.08 6.62 22.49 0.15 0.23 16 13 C -0.17 0.43 9.04 22.36 0.20 0.64 16 14 C -0.11 0.01 10.02 22.30 0.22 0.23 16 15 C 0.04 0.22 7.30 22.38 0.16 0.38 16 16 F -0.15 -1.17 17.27 44.97 0.78 -0.39 16 17 C -0.13 -0.66 8.64 22.30 0.19 -0.47 16 18 C -0.13 -0.46 5.28 -19.77 -0.10 -0.57 16 19 C -0.08 -0.24 2.33 71.24 0.17 -0.07 16 20 O -0.55 -2.17 12.65 -148.98 -1.89 -4.06 16 21 Si 1.02 3.54 25.73 68.60 1.77 5.31 16 22 H -0.24 -0.62 7.11 99.48 0.71 0.08 16 23 H -0.26 -1.40 6.74 99.48 0.67 -0.72 16 24 H -0.27 -1.41 7.11 99.48 0.71 -0.71 16 25 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 26 H 0.04 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 28 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 29 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 31 H 0.06 0.07 7.97 -2.39 -0.02 0.05 16 32 H 0.04 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 34 H 0.08 -0.55 7.48 -2.39 -0.02 -0.57 16 35 H 0.07 -0.37 7.79 -2.39 -0.02 -0.39 16 36 H 0.07 -0.33 7.79 -2.39 -0.02 -0.35 16 37 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 38 H 0.07 -0.26 7.79 -2.39 -0.02 -0.28 16 39 H 0.07 -0.37 7.48 -2.39 -0.02 -0.39 16 40 H 0.10 -1.32 7.21 -2.39 -0.02 -1.34 16 41 H 0.08 -0.72 7.21 -2.39 -0.02 -0.74 16 42 H 0.08 -0.66 7.66 -2.39 -0.02 -0.68 16 43 H 0.10 -1.28 7.66 -2.39 -0.02 -1.30 16 44 H 0.17 -1.53 6.30 -2.91 -0.02 -1.55 16 45 H 0.16 -0.72 8.06 -2.91 -0.02 -0.74 16 46 H 0.14 0.59 4.89 -2.91 -0.01 0.57 16 47 H 0.09 0.10 7.83 -2.39 -0.02 0.08 16 48 H 0.38 -0.44 8.60 -74.05 -0.64 -1.07 16 Total: 0.00 -11.80 386.56 5.60 -6.20 By element: Atomic # 1 Polarization: -11.85 SS G_CDS: 1.02 Total: -10.83 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 5.37 Total: 9.20 kcal Atomic # 8 Polarization: 0.17 SS G_CDS: -3.91 Total: -3.74 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.78 Total: -0.39 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.35 Total: -0.44 kcal Total: -11.80 5.60 -6.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.691 kcal (2) G-P(sol) polarization free energy of solvation -11.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds