Wall clock time and date at job start Tue Mar 9 2021 13:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47491 * 2 1 4 4 C 1.53002 * 109.46774 * 240.00260 * 2 1 3 5 5 O 1.42899 * 109.47121 * 120.00557 * 2 1 3 6 6 C 1.42897 * 114.00083 * 59.99730 * 5 2 1 7 7 H 1.08999 * 112.90793 * 341.25336 * 6 5 2 8 8 C 1.53781 * 113.61595 * 112.50279 * 6 5 2 9 9 C 1.54049 * 87.08031 * 139.97562 * 8 6 5 10 10 H 1.09000 * 113.61076 * 89.06984 * 9 8 6 11 11 C 1.52990 * 113.70090 * 220.05426 * 9 8 6 12 12 O 1.42903 * 109.47168 * 272.42623 * 11 9 8 13 13 C 1.35946 * 117.00195 * 179.97438 * 12 11 9 14 14 C 1.38688 * 120.03023 * 179.71783 * 13 12 11 15 15 C 1.50698 * 120.01574 * 0.02562 * 14 13 12 16 16 O 1.42894 * 109.47264 * 74.99413 * 15 14 13 17 17 Si 1.86292 * 109.47179 * 195.00009 * 15 14 13 18 18 C 1.38169 * 119.96612 * 179.79127 * 14 13 12 19 19 C 1.38432 * 120.03395 * 0.49162 * 18 14 13 20 20 F 1.35100 * 119.97201 * 179.76942 * 19 18 14 21 21 C 1.38475 * 120.06112 * 359.73801 * 19 18 14 22 22 C 1.38132 * 120.02802 * 0.02833 * 21 19 18 23 23 C 1.53781 * 113.61404 * 210.00015 * 6 5 2 24 24 H 1.09005 * 109.46889 * 299.99661 * 1 2 3 25 25 H 1.09006 * 109.47235 * 59.99148 * 1 2 3 26 26 H 1.08996 * 109.47816 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47372 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47323 * 300.00528 * 3 2 1 29 29 H 1.09005 * 109.46777 * 60.00271 * 3 2 1 30 30 H 1.09002 * 109.47440 * 300.00009 * 4 2 1 31 31 H 1.09000 * 109.47397 * 60.00443 * 4 2 1 32 32 H 1.09000 * 109.47214 * 179.97438 * 4 2 1 33 33 H 1.09005 * 113.61471 * 254.53145 * 8 6 5 34 34 H 1.08996 * 113.61178 * 25.34487 * 8 6 5 35 35 H 1.09007 * 109.47036 * 32.41747 * 11 9 8 36 36 H 1.08994 * 109.47734 * 152.42153 * 11 9 8 37 37 H 1.09000 * 109.46967 * 314.99807 * 15 14 13 38 38 H 0.96705 * 113.99974 * 59.99959 * 16 15 14 39 39 H 1.48504 * 110.00295 * 58.67656 * 17 15 14 40 40 H 1.48497 * 110.00137 * 180.02562 * 17 15 14 41 41 H 1.08004 * 119.98750 * 180.23288 * 18 14 13 42 42 H 1.07992 * 119.99048 * 180.02562 * 21 19 18 43 43 H 1.07998 * 120.01974 * 179.97438 * 22 21 19 44 44 H 1.09002 * 113.61445 * 334.56823 * 23 6 5 45 45 H 1.09002 * 113.61408 * 105.38554 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5846 -2.0356 1.2643 7 1 0.7241 -2.2595 0.6339 8 6 2.7333 -3.0480 1.1210 9 6 2.0549 -3.8572 2.2427 10 1 1.3227 -4.5782 1.8793 11 6 3.0388 -4.4619 3.2461 12 8 3.4721 -5.7403 2.7770 13 6 4.3561 -6.4169 3.5574 14 6 4.8137 -7.6660 3.1651 15 6 4.3317 -8.2739 1.8732 16 8 4.9709 -7.6235 0.7730 17 14 4.7475 -10.0896 1.8480 18 6 5.7154 -8.3507 3.9571 19 6 6.1543 -7.7949 5.1466 20 9 7.0325 -8.4675 5.9222 21 6 5.6947 -6.5499 5.5418 22 6 4.7968 -5.8611 4.7496 23 6 1.4332 -2.5313 2.7122 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6765 -1.7489 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7209 -1.2496 33 1 2.7461 -3.5605 0.1591 34 1 3.7072 -2.6454 1.3991 35 1 3.9006 -3.8028 3.3523 36 1 2.5479 -4.5767 4.2124 37 1 3.2521 -8.1473 1.7926 38 1 5.9352 -7.6954 0.7799 39 1 4.1147 -10.7718 3.0054 40 1 4.2779 -10.7007 0.5787 41 1 6.0749 -9.3218 3.6501 42 1 6.0381 -6.1173 6.4697 43 1 4.4381 -4.8903 5.0582 44 1 2.0515 -1.9879 3.4266 45 1 0.3964 -2.6254 3.0353 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_12398896_14598384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:08 Heat of formation + Delta-G solvation = -113.004357 kcal Electronic energy + Delta-G solvation = -26130.561579 eV Core-core repulsion = 22223.447176 eV Total energy + Delta-G solvation = -3907.114402 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.76999 -41.55305 -40.78953 -38.96427 -37.90765 -37.37730 -33.91777 -32.92093 -30.95763 -29.29758 -28.41787 -28.29677 -26.90564 -26.65222 -24.53461 -22.97343 -22.73335 -20.86086 -20.67444 -19.35597 -18.59462 -18.00878 -17.65910 -17.30775 -17.05003 -16.62288 -16.44770 -16.09509 -16.00402 -15.80251 -15.61009 -15.27618 -14.97660 -14.55428 -14.43014 -14.25885 -14.05661 -13.72602 -13.52455 -13.47308 -13.33932 -13.12829 -13.01068 -12.83295 -12.70903 -12.64099 -12.41426 -12.18448 -12.07578 -11.93006 -11.77943 -11.70498 -11.38476 -11.21526 -10.39453 -10.36680 -10.24741 -9.12724 -5.04390 -0.04755 0.13499 1.27676 1.64467 1.97857 2.01494 2.39718 2.71038 3.18767 3.39516 3.43032 3.50738 3.54557 3.69816 3.72214 3.75025 3.86402 3.93039 3.96380 3.99432 4.05606 4.08541 4.17814 4.25105 4.38570 4.46316 4.52850 4.54022 4.62104 4.70688 4.70968 4.73647 4.75108 4.79024 4.86230 4.89298 4.94649 4.99253 5.01934 5.07641 5.11596 5.13659 5.26772 5.28566 5.33875 5.60901 6.28841 6.39203 6.62018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.361 6.361 6 C 0.062 3.938 7 H 0.092 0.908 8 C -0.146 4.146 9 C -0.109 4.109 10 H 0.104 0.896 11 C 0.069 3.931 12 O -0.297 6.297 13 C 0.149 3.851 14 C -0.129 4.129 15 C -0.053 4.053 16 O -0.532 6.532 17 Si 0.678 3.322 18 C -0.110 4.110 19 C 0.065 3.935 20 F -0.137 7.137 21 C -0.105 4.105 22 C -0.183 4.183 23 C -0.127 4.127 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.376 0.624 39 H -0.255 1.255 40 H -0.251 1.251 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.093 0.907 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 1.803 -0.342 1.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.066 3.934 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.280 6.280 6 C 0.004 3.996 7 H 0.110 0.890 8 C -0.183 4.183 9 C -0.127 4.127 10 H 0.122 0.878 11 C -0.006 4.006 12 O -0.210 6.210 13 C 0.102 3.898 14 C -0.130 4.130 15 C -0.164 4.164 16 O -0.337 6.337 17 Si 0.579 3.421 18 C -0.128 4.128 19 C 0.045 3.955 20 F -0.115 7.115 21 C -0.123 4.123 22 C -0.201 4.201 23 C -0.164 4.164 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.223 0.777 39 H -0.179 1.179 40 H -0.175 1.175 41 H 0.164 0.836 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.112 0.888 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.933 1.147 -0.574 1.585 hybrid contribution -0.382 0.366 0.421 0.676 sum -1.315 1.512 -0.152 2.010 Atomic orbital electron populations 1.22473 0.95669 1.02445 1.03074 1.21537 0.93083 0.93249 0.85542 1.21768 1.02036 0.93208 1.02601 1.22472 1.02358 1.00785 0.97790 1.88030 1.73748 1.23358 1.42911 1.23563 0.97124 0.81889 0.97050 0.89018 1.23645 0.99304 0.96293 0.99097 1.22337 0.97962 0.95765 0.96654 0.87826 1.22883 0.97546 0.82478 0.97682 1.86176 1.56985 1.31684 1.46163 1.18759 0.90070 0.91323 0.89625 1.19515 1.00501 0.93876 0.99113 1.24880 1.00281 1.07379 0.83838 1.86561 1.24182 1.78557 1.44396 0.95055 0.91693 0.74399 0.80913 1.20804 0.97896 1.00346 0.93740 1.17424 0.94279 0.92423 0.91327 1.91528 1.66425 1.79708 1.73860 1.21025 0.97252 0.93290 1.00775 1.21189 1.01700 1.02039 0.95215 1.23231 1.01788 0.94246 0.97176 0.91613 0.91343 0.92240 0.91745 0.91059 0.91774 0.92263 0.91534 0.91634 0.90829 0.89101 0.91410 0.91631 0.86644 0.77712 1.17941 1.17535 0.83611 0.84068 0.84200 0.88808 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.11 8.38 37.16 0.31 0.43 16 2 C 0.10 0.02 1.11 -90.62 -0.10 -0.08 16 3 C -0.14 0.04 8.84 37.15 0.33 0.37 16 4 C -0.18 0.06 8.38 37.16 0.31 0.37 16 5 O -0.36 -0.58 10.00 -35.23 -0.35 -0.93 16 6 C 0.06 -0.01 2.82 -25.92 -0.07 -0.08 16 7 H 0.09 -0.07 5.55 -51.93 -0.29 -0.36 16 8 C -0.15 0.00 7.47 -25.78 -0.19 -0.19 16 9 C -0.11 0.09 4.02 -89.67 -0.36 -0.28 16 10 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 11 C 0.07 -0.04 4.58 37.15 0.17 0.13 16 12 O -0.30 -0.51 9.47 -19.57 -0.19 -0.70 16 13 C 0.15 0.21 6.66 -39.23 -0.26 -0.05 16 14 C -0.13 -0.12 5.27 -104.48 -0.55 -0.67 16 15 C -0.05 -0.04 2.38 36.00 0.09 0.05 16 16 O -0.53 -0.57 12.88 -35.23 -0.45 -1.03 16 17 Si 0.68 -0.35 29.92 -169.99 -5.09 -5.44 16 18 C -0.11 -0.02 8.63 -39.54 -0.34 -0.36 16 19 C 0.06 0.07 7.30 -39.42 -0.29 -0.21 16 20 F -0.14 -0.30 17.27 2.25 0.04 -0.27 16 21 C -0.10 -0.02 10.02 -39.53 -0.40 -0.42 16 22 C -0.18 -0.02 9.04 -39.44 -0.36 -0.37 16 23 C -0.13 0.14 7.46 -25.92 -0.19 -0.06 16 24 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 25 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 26 H 0.06 -0.06 6.25 -51.93 -0.32 -0.38 16 27 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 28 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 29 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.06 -0.02 7.02 -51.93 -0.36 -0.39 16 31 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.09 0.06 7.91 -51.93 -0.41 -0.35 16 35 H 0.07 -0.08 7.37 -51.93 -0.38 -0.46 16 36 H 0.07 -0.11 7.66 -51.93 -0.40 -0.51 16 37 H 0.12 0.20 7.83 -51.93 -0.41 -0.21 16 38 H 0.38 -1.10 8.70 45.56 0.40 -0.70 16 39 H -0.25 -0.50 7.11 56.52 0.40 -0.10 16 40 H -0.25 -0.64 7.11 56.52 0.40 -0.23 16 41 H 0.15 -0.29 5.14 -52.48 -0.27 -0.56 16 42 H 0.14 -0.22 8.06 -52.49 -0.42 -0.64 16 43 H 0.14 -0.26 6.30 -52.49 -0.33 -0.59 16 44 H 0.09 -0.09 8.10 -51.93 -0.42 -0.51 16 45 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 LS Contribution 363.40 15.07 5.48 5.48 Total: 0.00 -5.45 363.40 -9.52 -14.96 By element: Atomic # 1 Polarization: -3.60 SS G_CDS: -7.05 Total: -10.65 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.91 Total: -1.43 kcal Atomic # 8 Polarization: -1.67 SS G_CDS: -0.99 Total: -2.66 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.04 Total: -0.27 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: -5.09 Total: -5.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -5.45 -9.52 -14.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_14598384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.041 kcal (2) G-P(sol) polarization free energy of solvation -5.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds