Wall clock time and date at job start Tue Mar 9 2021 13:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47491 * 2 1 4 4 C 1.53002 * 109.46774 * 240.00260 * 2 1 3 5 5 O 1.42899 * 109.47121 * 120.00557 * 2 1 3 6 6 C 1.42897 * 114.00083 * 59.99730 * 5 2 1 7 7 H 1.08999 * 112.90793 * 341.25336 * 6 5 2 8 8 C 1.53781 * 113.61595 * 112.50279 * 6 5 2 9 9 C 1.54049 * 87.08031 * 139.97562 * 8 6 5 10 10 H 1.09000 * 113.61076 * 89.06984 * 9 8 6 11 11 C 1.52990 * 113.70090 * 220.05426 * 9 8 6 12 12 O 1.42903 * 109.47168 * 272.42623 * 11 9 8 13 13 C 1.35946 * 117.00195 * 179.97438 * 12 11 9 14 14 C 1.38688 * 120.03023 * 179.71783 * 13 12 11 15 15 C 1.50698 * 120.01574 * 0.02562 * 14 13 12 16 16 O 1.42894 * 109.47264 * 74.99413 * 15 14 13 17 17 Si 1.86292 * 109.47179 * 195.00009 * 15 14 13 18 18 C 1.38169 * 119.96612 * 179.79127 * 14 13 12 19 19 C 1.38432 * 120.03395 * 0.49162 * 18 14 13 20 20 F 1.35100 * 119.97201 * 179.76942 * 19 18 14 21 21 C 1.38475 * 120.06112 * 359.73801 * 19 18 14 22 22 C 1.38132 * 120.02802 * 0.02833 * 21 19 18 23 23 C 1.53781 * 113.61404 * 210.00015 * 6 5 2 24 24 H 1.09005 * 109.46889 * 299.99661 * 1 2 3 25 25 H 1.09006 * 109.47235 * 59.99148 * 1 2 3 26 26 H 1.08996 * 109.47816 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47372 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47323 * 300.00528 * 3 2 1 29 29 H 1.09005 * 109.46777 * 60.00271 * 3 2 1 30 30 H 1.09002 * 109.47440 * 300.00009 * 4 2 1 31 31 H 1.09000 * 109.47397 * 60.00443 * 4 2 1 32 32 H 1.09000 * 109.47214 * 179.97438 * 4 2 1 33 33 H 1.09005 * 113.61471 * 254.53145 * 8 6 5 34 34 H 1.08996 * 113.61178 * 25.34487 * 8 6 5 35 35 H 1.09007 * 109.47036 * 32.41747 * 11 9 8 36 36 H 1.08994 * 109.47734 * 152.42153 * 11 9 8 37 37 H 1.09000 * 109.46967 * 314.99807 * 15 14 13 38 38 H 0.96705 * 113.99974 * 59.99959 * 16 15 14 39 39 H 1.48504 * 110.00295 * 58.67656 * 17 15 14 40 40 H 1.48497 * 110.00137 * 180.02562 * 17 15 14 41 41 H 1.08004 * 119.98750 * 180.23288 * 18 14 13 42 42 H 1.07992 * 119.99048 * 180.02562 * 21 19 18 43 43 H 1.07998 * 120.01974 * 179.97438 * 22 21 19 44 44 H 1.09002 * 113.61445 * 334.56823 * 23 6 5 45 45 H 1.09002 * 113.61408 * 105.38554 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5846 -2.0356 1.2643 7 1 0.7241 -2.2595 0.6339 8 6 2.7333 -3.0480 1.1210 9 6 2.0549 -3.8572 2.2427 10 1 1.3227 -4.5782 1.8793 11 6 3.0388 -4.4619 3.2461 12 8 3.4721 -5.7403 2.7770 13 6 4.3561 -6.4169 3.5574 14 6 4.8137 -7.6660 3.1651 15 6 4.3317 -8.2739 1.8732 16 8 4.9709 -7.6235 0.7730 17 14 4.7475 -10.0896 1.8480 18 6 5.7154 -8.3507 3.9571 19 6 6.1543 -7.7949 5.1466 20 9 7.0325 -8.4675 5.9222 21 6 5.6947 -6.5499 5.5418 22 6 4.7968 -5.8611 4.7496 23 6 1.4332 -2.5313 2.7122 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6765 -1.7489 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7209 -1.2496 33 1 2.7461 -3.5605 0.1591 34 1 3.7072 -2.6454 1.3991 35 1 3.9006 -3.8028 3.3523 36 1 2.5479 -4.5767 4.2124 37 1 3.2521 -8.1473 1.7926 38 1 5.9352 -7.6954 0.7799 39 1 4.1147 -10.7718 3.0054 40 1 4.2779 -10.7007 0.5787 41 1 6.0749 -9.3218 3.6501 42 1 6.0381 -6.1173 6.4697 43 1 4.4381 -4.8903 5.0582 44 1 2.0515 -1.9879 3.4266 45 1 0.3964 -2.6254 3.0353 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12398896_14598384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:07 Heat of formation + Delta-G solvation = -106.699259 kcal Electronic energy + Delta-G solvation = -26130.288169 eV Core-core repulsion = 22223.447176 eV Total energy + Delta-G solvation = -3906.840993 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.85999 -41.55850 -40.78491 -38.97077 -37.91575 -37.40867 -33.92487 -32.92992 -30.95962 -29.28284 -28.37362 -28.26709 -26.93367 -26.62181 -24.52495 -22.97963 -22.74944 -20.84907 -20.64356 -19.36447 -18.63395 -18.03888 -17.66146 -17.34348 -17.06110 -16.62169 -16.50075 -16.10263 -16.03627 -15.79961 -15.62175 -15.30183 -14.97224 -14.52694 -14.42167 -14.27375 -14.16805 -13.72820 -13.51097 -13.43903 -13.29711 -13.11897 -12.97087 -12.79965 -12.69534 -12.63927 -12.41808 -12.20075 -12.16172 -11.94804 -11.76898 -11.68149 -11.35550 -11.18716 -10.43511 -10.37500 -10.24389 -9.16896 -5.04630 -0.04181 0.09730 1.25902 1.61392 1.92976 2.03509 2.38320 2.73455 3.16358 3.43786 3.44425 3.54253 3.58563 3.74004 3.76397 3.79016 3.89574 3.96209 4.00155 4.02369 4.08450 4.12247 4.24073 4.26996 4.41146 4.50721 4.55633 4.60046 4.66037 4.67536 4.76317 4.76797 4.77281 4.83888 4.90270 4.92482 4.95210 5.00311 5.02448 5.10875 5.12823 5.15557 5.29730 5.31502 5.36930 5.60708 6.28832 6.40063 6.77495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 C -0.139 4.139 4 C -0.174 4.174 5 O -0.379 6.379 6 C 0.059 3.941 7 H 0.098 0.902 8 C -0.146 4.146 9 C -0.103 4.103 10 H 0.102 0.898 11 C 0.066 3.934 12 O -0.314 6.314 13 C 0.134 3.866 14 C -0.138 4.138 15 C -0.059 4.059 16 O -0.550 6.550 17 Si 0.771 3.229 18 C -0.108 4.108 19 C 0.048 3.952 20 F -0.145 7.145 21 C -0.105 4.105 22 C -0.183 4.183 23 C -0.120 4.120 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.393 0.607 39 H -0.286 1.286 40 H -0.293 1.293 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.093 0.907 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 2.067 -0.006 2.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.060 3.940 3 C -0.196 4.196 4 C -0.232 4.232 5 O -0.299 6.299 6 C 0.001 3.999 7 H 0.115 0.885 8 C -0.184 4.184 9 C -0.122 4.122 10 H 0.120 0.880 11 C -0.008 4.008 12 O -0.227 6.227 13 C 0.088 3.912 14 C -0.140 4.140 15 C -0.169 4.169 16 O -0.357 6.357 17 Si 0.676 3.324 18 C -0.126 4.126 19 C 0.029 3.971 20 F -0.124 7.124 21 C -0.124 4.124 22 C -0.201 4.201 23 C -0.158 4.158 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.242 0.758 39 H -0.212 1.212 40 H -0.220 1.220 41 H 0.182 0.818 42 H 0.176 0.824 43 H 0.176 0.824 44 H 0.112 0.888 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.936 1.438 -0.232 1.731 hybrid contribution -0.396 0.309 0.284 0.577 sum -1.332 1.747 0.051 2.197 Atomic orbital electron populations 1.22450 0.94963 1.02709 1.03299 1.21667 0.93691 0.93351 0.85320 1.21790 1.01639 0.93159 1.03046 1.22448 1.01805 1.00871 0.98036 1.88005 1.74233 1.24088 1.43573 1.23658 0.97101 0.81245 0.97876 0.88468 1.23610 0.99105 0.96607 0.99092 1.22284 0.97782 0.95775 0.96314 0.87975 1.23002 0.97839 0.81805 0.98198 1.86154 1.57211 1.32529 1.46828 1.19006 0.90334 0.91677 0.90183 1.19595 1.00950 0.94107 0.99311 1.25001 0.99604 1.08478 0.83815 1.86515 1.25826 1.78806 1.44558 0.93992 0.90174 0.71451 0.76741 1.20964 0.97374 1.00964 0.93306 1.17639 0.94723 0.93005 0.91744 1.91506 1.66787 1.79950 1.74119 1.21257 0.96837 0.92956 1.01324 1.21382 1.01393 1.02699 0.94647 1.23190 1.02336 0.93671 0.96556 0.92014 0.90466 0.91961 0.92383 0.89799 0.92143 0.92313 0.90591 0.92457 0.91545 0.89931 0.90914 0.90300 0.88148 0.75791 1.21242 1.22033 0.81786 0.82433 0.82426 0.88824 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.26 8.38 71.98 0.60 0.87 16 2 C 0.10 0.06 1.11 -10.80 -0.01 0.05 16 3 C -0.14 0.04 8.84 71.98 0.64 0.68 16 4 C -0.17 0.06 8.38 71.98 0.60 0.67 16 5 O -0.38 -1.40 10.00 -148.98 -1.49 -2.89 16 6 C 0.06 0.01 2.82 31.12 0.09 0.10 16 7 H 0.10 -0.13 5.55 -2.39 -0.01 -0.14 16 8 C -0.15 -0.11 7.47 31.21 0.23 0.12 16 9 C -0.10 0.14 4.02 -10.18 -0.04 0.10 16 10 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 11 C 0.07 -0.09 4.58 71.98 0.33 0.24 16 12 O -0.31 -1.23 9.47 -92.94 -0.88 -2.11 16 13 C 0.13 0.40 6.66 22.50 0.15 0.55 16 14 C -0.14 -0.29 5.27 -19.77 -0.10 -0.39 16 15 C -0.06 -0.12 2.38 71.24 0.17 0.05 16 16 O -0.55 -1.43 12.88 -148.98 -1.92 -3.34 16 17 Si 0.77 -0.58 29.92 68.60 2.05 1.47 16 18 C -0.11 -0.03 8.63 22.30 0.19 0.16 16 19 C 0.05 0.10 7.30 22.37 0.16 0.26 16 20 F -0.14 -0.63 17.27 44.97 0.78 0.15 16 21 C -0.11 0.01 10.02 22.30 0.22 0.24 16 22 C -0.18 0.05 9.04 22.36 0.20 0.25 16 23 C -0.12 0.28 7.46 31.12 0.23 0.51 16 24 H 0.06 -0.04 8.14 -2.38 -0.02 -0.05 16 25 H 0.08 -0.26 8.14 -2.38 -0.02 -0.28 16 26 H 0.06 -0.13 6.25 -2.39 -0.01 -0.15 16 27 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 30 H 0.06 -0.02 7.02 -2.39 -0.02 -0.04 16 31 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.07 0.13 8.14 -2.38 -0.02 0.11 16 34 H 0.08 0.20 7.91 -2.39 -0.02 0.18 16 35 H 0.07 -0.18 7.37 -2.38 -0.02 -0.20 16 36 H 0.08 -0.32 7.66 -2.39 -0.02 -0.34 16 37 H 0.10 0.47 7.83 -2.39 -0.02 0.45 16 38 H 0.39 -2.29 8.70 -74.05 -0.64 -2.94 16 39 H -0.29 -1.24 7.11 99.48 0.71 -0.53 16 40 H -0.29 -1.81 7.11 99.48 0.71 -1.10 16 41 H 0.17 -0.76 5.14 -2.91 -0.01 -0.77 16 42 H 0.16 -0.64 8.06 -2.91 -0.02 -0.66 16 43 H 0.16 -0.73 6.30 -2.91 -0.02 -0.75 16 44 H 0.09 -0.19 8.10 -2.39 -0.02 -0.21 16 45 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: 0.00 -13.17 363.40 2.59 -10.58 By element: Atomic # 1 Polarization: -8.70 SS G_CDS: 0.38 Total: -8.31 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 3.67 Total: 4.46 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -4.29 Total: -8.34 kcal Atomic # 9 Polarization: -0.63 SS G_CDS: 0.78 Total: 0.15 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: 2.05 Total: 1.47 kcal Total: -13.17 2.59 -10.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_14598384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.123 kcal (2) G-P(sol) polarization free energy of solvation -13.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds