Wall clock time and date at job start Tue Mar 9 2021 13:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52990 * 109.46976 * 2 1 4 4 C 1.52994 * 109.47011 * 239.99734 * 2 1 3 5 5 O 1.45201 * 109.46533 * 119.99737 * 2 1 3 6 6 C 1.34642 * 117.00026 * 60.00460 * 5 2 1 7 7 O 1.21514 * 120.00025 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99648 * 179.97438 * 6 5 2 9 9 C 1.46504 * 119.99365 * 179.97438 * 8 6 5 10 10 H 1.08995 * 112.85116 * 336.19274 * 9 8 6 11 11 C 1.53951 * 113.61463 * 107.47060 * 9 8 6 12 12 C 1.53782 * 87.02036 * 89.19465 * 11 9 8 13 13 H 1.09000 * 113.61395 * 270.77162 * 12 11 9 14 14 C 1.53002 * 113.61212 * 139.95699 * 12 11 9 15 15 O 1.42894 * 109.47672 * 85.86368 * 14 12 11 16 16 C 1.35943 * 117.00446 * 179.97438 * 15 14 12 17 17 C 1.38689 * 120.03291 * 180.27098 * 16 15 14 18 18 C 1.50693 * 120.01463 * 0.02562 * 17 16 15 19 19 O 1.42907 * 109.47148 * 285.27707 * 18 17 16 20 20 Si 1.86303 * 109.47226 * 165.28048 * 18 17 16 21 21 C 1.38169 * 119.96907 * 180.30374 * 17 16 15 22 22 C 1.38433 * 120.02933 * 359.44293 * 21 17 16 23 23 F 1.35100 * 119.97138 * 180.27955 * 22 21 17 24 24 C 1.38472 * 120.06291 * 0.25790 * 22 21 17 25 25 C 1.38135 * 120.03078 * 0.02562 * 24 22 21 26 26 C 1.53779 * 87.17437 * 25.36296 * 12 11 9 27 27 H 1.08995 * 109.46951 * 300.00464 * 1 2 3 28 28 H 1.09002 * 109.46812 * 60.00445 * 1 2 3 29 29 H 1.09000 * 109.47089 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46972 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47702 * 299.99619 * 3 2 1 32 32 H 1.08995 * 109.47659 * 59.99970 * 3 2 1 33 33 H 1.09009 * 109.47624 * 300.00086 * 4 2 1 34 34 H 1.09002 * 109.47479 * 60.00230 * 4 2 1 35 35 H 1.09007 * 109.47193 * 180.02562 * 4 2 1 36 36 H 0.96999 * 120.00598 * 359.97438 * 8 6 5 37 37 H 1.09005 * 113.66377 * 334.67028 * 11 9 8 38 38 H 1.08996 * 113.61886 * 203.71594 * 11 9 8 39 39 H 1.09003 * 109.47073 * 325.85550 * 14 12 11 40 40 H 1.08998 * 109.46713 * 205.86533 * 14 12 11 41 41 H 1.09001 * 109.47424 * 45.27641 * 18 17 16 42 42 H 0.96696 * 114.00258 * 60.00365 * 19 18 17 43 43 H 1.48500 * 110.00042 * 178.68397 * 20 18 17 44 44 H 1.48501 * 109.99759 * 300.00062 * 20 18 17 45 45 H 1.08002 * 119.98795 * 179.72829 * 21 17 16 46 46 H 1.08002 * 119.99237 * 179.97438 * 24 22 21 47 47 H 1.07999 * 120.01606 * 179.97438 * 25 24 22 48 48 H 1.09000 * 113.61434 * 89.15139 * 26 12 11 49 49 H 1.08997 * 113.61405 * 220.06340 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5095 0.5040 8 7 2.0679 -2.6656 2.4168 9 6 1.6738 -4.0668 2.5832 10 1 0.7590 -4.3159 2.0455 11 6 2.8225 -5.0632 2.3434 12 6 3.1492 -4.9232 3.8396 13 1 3.8473 -4.1157 4.0605 14 6 3.5372 -6.2435 4.5084 15 8 4.9358 -6.4753 4.3294 16 6 5.4466 -7.6143 4.8677 17 6 6.7976 -7.8990 4.7363 18 6 7.7005 -6.9454 3.9970 19 8 7.4683 -7.0621 2.5918 20 14 9.4785 -7.3591 4.3690 21 6 7.3142 -9.0601 5.2785 22 6 6.4862 -9.9334 5.9626 23 9 6.9937 -11.0656 6.4972 24 6 5.1383 -9.6474 6.1000 25 6 4.6180 -8.4902 5.5538 26 6 1.6752 -4.5373 4.0474 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2492 34 1 1.6768 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 2.6280 -2.2370 3.0827 37 1 3.6046 -4.6798 1.6881 38 1 2.4841 -6.0603 2.0619 39 1 2.9729 -7.0593 4.0565 40 1 3.3109 -6.1916 5.5733 41 1 7.4904 -5.9246 4.3164 42 1 6.5609 -6.8607 2.3250 43 1 10.3796 -6.4461 3.6210 44 1 9.7329 -7.2415 5.8273 45 1 8.3654 -9.2842 5.1725 46 1 4.4933 -10.3297 6.6336 47 1 3.5666 -8.2676 5.6607 48 1 1.0224 -5.3903 4.2324 49 1 1.5323 -3.7299 4.7656 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12398896_15734082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:11 Heat of formation + Delta-G solvation = -141.510049 kcal Electronic energy + Delta-G solvation = -31580.790601 eV Core-core repulsion = 27004.568236 eV Total energy + Delta-G solvation = -4576.222365 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.172 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.86376 -42.00853 -41.51518 -40.37715 -38.56359 -37.81148 -37.45089 -35.39836 -34.13428 -32.92678 -30.93005 -29.20638 -28.40402 -28.33988 -26.91812 -26.73131 -25.06853 -23.74688 -22.89280 -22.63629 -21.20525 -20.31502 -19.43137 -19.27266 -18.61832 -18.19461 -17.68967 -17.58922 -17.25486 -17.05688 -16.66219 -16.43772 -16.13304 -15.88720 -15.77968 -15.48372 -15.36606 -15.31533 -15.01020 -14.60812 -14.42907 -14.16557 -14.13771 -13.83386 -13.50295 -13.40590 -13.31334 -13.21770 -12.99736 -12.94984 -12.90680 -12.66568 -12.54417 -12.36537 -12.20549 -11.99602 -11.88623 -11.68545 -11.43670 -11.34937 -11.22600 -11.17499 -11.15307 -10.22280 -10.20991 -9.17973 -4.94737 -0.03148 0.08641 1.09624 1.32150 1.56959 1.68153 1.90112 2.02188 2.38534 3.07220 3.16969 3.38212 3.45817 3.49908 3.60574 3.70264 3.74123 3.78270 3.80362 3.87498 3.90578 4.01303 4.03870 4.15815 4.24417 4.40256 4.42589 4.45956 4.55349 4.57707 4.58800 4.63617 4.72089 4.72746 4.75151 4.79806 4.83882 4.86636 4.97381 4.99238 5.02547 5.03392 5.05173 5.10405 5.14172 5.23407 5.28154 5.44863 5.57329 5.60457 6.25698 6.33023 6.55932 7.28653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.645 3.355 7 O -0.592 6.592 8 N -0.685 5.685 9 C 0.127 3.873 10 H 0.095 0.905 11 C -0.145 4.145 12 C -0.103 4.103 13 H 0.098 0.902 14 C 0.061 3.939 15 O -0.320 6.320 16 C 0.129 3.871 17 C -0.134 4.134 18 C -0.073 4.073 19 O -0.545 6.545 20 Si 0.798 3.202 21 C -0.113 4.113 22 C 0.049 3.951 23 F -0.146 7.146 24 C -0.107 4.107 25 C -0.175 4.175 26 C -0.118 4.118 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.416 0.584 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.374 0.626 43 H -0.292 1.292 44 H -0.265 1.265 45 H 0.158 0.842 46 H 0.160 0.840 47 H 0.167 0.833 48 H 0.122 0.878 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 1.036 2.657 4.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.285 6.285 6 C 0.399 3.601 7 O -0.483 6.483 8 N -0.344 5.344 9 C 0.022 3.978 10 H 0.114 0.886 11 C -0.183 4.183 12 C -0.121 4.121 13 H 0.117 0.883 14 C -0.013 4.013 15 O -0.234 6.234 16 C 0.083 3.917 17 C -0.135 4.135 18 C -0.181 4.181 19 O -0.351 6.351 20 Si 0.700 3.300 21 C -0.131 4.131 22 C 0.029 3.971 23 F -0.125 7.125 24 C -0.126 4.126 25 C -0.193 4.193 26 C -0.156 4.156 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.253 0.747 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.223 0.777 43 H -0.220 1.220 44 H -0.191 1.191 45 H 0.176 0.824 46 H 0.177 0.823 47 H 0.184 0.816 48 H 0.140 0.860 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.094 1.104 2.429 3.391 hybrid contribution -1.100 0.901 0.395 1.475 sum -3.193 2.005 2.824 4.711 Atomic orbital electron populations 1.22475 0.93892 1.03755 1.03570 1.22353 0.94556 0.92524 0.81426 1.21897 1.02404 0.90929 1.04305 1.22478 1.01560 1.02296 0.97431 1.86311 1.71563 1.23346 1.47330 1.18330 0.78584 0.80703 0.82482 1.90907 1.42228 1.71024 1.44104 1.44395 1.54884 1.11992 1.23122 1.21928 0.98698 0.78051 0.99082 0.88650 1.23590 0.98016 1.00310 0.96413 1.22584 0.97500 0.96610 0.95446 0.88333 1.23146 0.78103 0.98181 1.01879 1.86049 1.27372 1.37310 1.72651 1.18897 0.92083 0.86832 0.93899 1.19524 0.92783 0.97509 1.03696 1.25373 1.11262 0.98368 0.83092 1.86701 1.35214 1.92797 1.20438 0.92217 0.70890 0.89430 0.77503 1.20964 1.00872 0.93107 0.98153 1.17695 0.93147 0.85154 1.01075 1.91503 1.87786 1.48704 1.84475 1.21293 0.93316 0.98249 0.99730 1.21409 1.01654 0.94838 1.01421 1.23323 0.94955 1.02870 0.94421 0.91865 0.89449 0.91704 0.91300 0.88263 0.91119 0.91738 0.89410 0.92096 0.74743 0.92107 0.87682 0.89836 0.90066 0.90797 0.77675 1.21984 1.19095 0.82449 0.82267 0.81569 0.86024 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.52 8.37 71.99 0.60 0.09 16 2 C 0.13 0.37 1.13 -10.80 -0.01 0.35 16 3 C -0.14 0.28 8.85 71.98 0.64 0.92 16 4 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 5 O -0.37 -1.97 9.94 -55.51 -0.55 -2.53 16 6 C 0.65 3.93 8.06 129.79 1.05 4.97 16 7 O -0.59 -6.73 11.48 19.80 0.23 -6.50 16 8 N -0.68 0.53 5.27 -567.31 -2.99 -2.46 16 9 C 0.13 -0.46 4.33 45.58 0.20 -0.26 16 10 H 0.10 0.00 7.46 -2.39 -0.02 -0.02 16 11 C -0.14 0.71 7.44 31.18 0.23 0.94 16 12 C -0.10 0.84 3.88 -10.27 -0.04 0.80 16 13 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 14 C 0.06 -0.50 4.57 71.98 0.33 -0.17 16 15 O -0.32 0.72 9.01 -92.91 -0.84 -0.12 16 16 C 0.13 -0.06 6.61 22.50 0.15 0.09 16 17 C -0.13 -0.24 5.28 -19.78 -0.10 -0.34 16 18 C -0.07 -0.18 2.33 71.23 0.17 -0.01 16 19 O -0.54 -2.15 12.65 -148.98 -1.89 -4.03 16 20 Si 0.80 1.27 30.17 68.60 2.07 3.34 16 21 C -0.11 -0.17 8.63 22.30 0.19 0.02 16 22 C 0.05 0.11 7.30 22.37 0.16 0.27 16 23 F -0.15 -0.70 17.27 44.97 0.78 0.08 16 24 C -0.11 0.18 10.02 22.30 0.22 0.40 16 25 C -0.17 0.61 9.04 22.36 0.20 0.81 16 26 C -0.12 1.16 7.39 31.12 0.23 1.39 16 27 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.09 -0.05 8.14 -2.39 -0.02 -0.06 16 29 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 30 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 31 H 0.10 -0.52 8.14 -2.38 -0.02 -0.54 16 32 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.06 0.55 5.88 -2.38 -0.01 0.54 16 34 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 36 H 0.42 -2.02 8.81 -92.71 -0.82 -2.84 16 37 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 38 H 0.10 -0.68 7.92 -2.39 -0.02 -0.70 16 39 H 0.08 -0.89 7.40 -2.39 -0.02 -0.91 16 40 H 0.08 -0.85 7.66 -2.39 -0.02 -0.87 16 41 H 0.07 0.19 7.83 -2.39 -0.02 0.17 16 42 H 0.37 0.00 8.57 -74.06 -0.63 -0.63 16 43 H -0.29 -2.37 7.11 99.48 0.71 -1.66 16 44 H -0.27 -1.07 7.11 99.48 0.71 -0.37 16 45 H 0.16 -0.30 5.13 -2.91 -0.01 -0.31 16 46 H 0.16 -0.91 8.06 -2.91 -0.02 -0.94 16 47 H 0.17 -1.56 6.30 -2.91 -0.02 -1.58 16 48 H 0.12 -1.58 8.10 -2.39 -0.02 -1.60 16 49 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 Total: 0.00 -16.85 398.02 1.20 -15.65 By element: Atomic # 1 Polarization: -13.26 SS G_CDS: -0.43 Total: -13.68 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 4.82 Total: 10.26 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: -2.99 Total: -2.46 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -3.05 Total: -13.18 kcal Atomic # 9 Polarization: -0.70 SS G_CDS: 0.78 Total: 0.08 kcal Atomic # 14 Polarization: 1.27 SS G_CDS: 2.07 Total: 3.34 kcal Total: -16.85 1.20 -15.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_15734082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.861 kcal (2) G-P(sol) polarization free energy of solvation -16.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds