Wall clock time and date at job start Tue Mar 9 2021 13:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.52998 * 109.47024 * 240.00220 * 2 1 3 5 5 O 1.45198 * 109.47118 * 120.00676 * 2 1 3 6 6 C 1.34634 * 117.00454 * 59.99679 * 5 2 1 7 7 O 1.21514 * 119.99794 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00021 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.84688 * 335.91529 * 9 8 6 11 11 C 1.53775 * 113.61467 * 107.22238 * 9 8 6 12 12 C 1.53784 * 87.08028 * 139.98120 * 11 9 8 13 13 H 1.09004 * 113.68613 * 89.12337 * 12 11 9 14 14 C 1.52992 * 113.61437 * 220.01769 * 12 11 9 15 15 O 1.42902 * 109.47436 * 272.49391 * 14 12 11 16 16 C 1.35945 * 117.00257 * 179.97438 * 15 14 12 17 17 C 1.38682 * 120.03018 * 179.72293 * 16 15 14 18 18 C 1.50702 * 120.01536 * 0.03147 * 17 16 15 19 19 O 1.42898 * 109.47287 * 74.99807 * 18 17 16 20 20 Si 1.86304 * 109.47114 * 194.99785 * 18 17 16 21 21 C 1.38176 * 119.97003 * 179.79464 * 17 16 15 22 22 C 1.38436 * 120.02756 * 0.49216 * 21 17 16 23 23 F 1.35100 * 119.96797 * 179.76593 * 22 21 17 24 24 C 1.38475 * 120.06082 * 359.74025 * 22 21 17 25 25 C 1.38129 * 120.02678 * 0.02734 * 24 22 21 26 26 C 1.53781 * 113.61226 * 204.72300 * 9 8 6 27 27 H 1.09003 * 109.47056 * 299.99821 * 1 2 3 28 28 H 1.08999 * 109.46878 * 59.99793 * 1 2 3 29 29 H 1.08997 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46800 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46961 * 300.00429 * 3 2 1 32 32 H 1.09001 * 109.46524 * 60.00216 * 3 2 1 33 33 H 1.08998 * 109.47435 * 300.00287 * 4 2 1 34 34 H 1.09008 * 109.47422 * 60.00035 * 4 2 1 35 35 H 1.09000 * 109.47606 * 180.02562 * 4 2 1 36 36 H 0.97005 * 120.00161 * 359.72161 * 8 6 5 37 37 H 1.09003 * 113.61589 * 254.53047 * 11 9 8 38 38 H 1.09001 * 113.61847 * 25.43384 * 11 9 8 39 39 H 1.09003 * 109.47581 * 32.49772 * 14 12 11 40 40 H 1.09007 * 109.47141 * 152.49753 * 14 12 11 41 41 H 1.08997 * 109.46953 * 314.99543 * 18 17 16 42 42 H 0.96701 * 113.99977 * 180.02562 * 19 18 17 43 43 H 1.48505 * 109.99717 * 299.99521 * 20 18 17 44 44 H 1.48495 * 109.99950 * 61.31500 * 20 18 17 45 45 H 1.07995 * 119.98308 * 180.23607 * 21 17 16 46 46 H 1.07995 * 119.98376 * 179.97438 * 24 22 21 47 47 H 1.08005 * 120.00748 * 179.97438 * 25 24 22 48 48 H 1.08996 * 113.61882 * 334.56342 * 26 9 8 49 49 H 1.09003 * 113.61401 * 105.38906 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9516 -2.5098 0.5034 8 7 2.0673 -2.6655 2.4170 9 6 1.6741 -4.0671 2.5829 10 1 0.7574 -4.3156 2.0479 11 6 2.8211 -5.0617 2.3387 12 6 2.2773 -5.8613 3.5344 13 1 1.5262 -6.6023 3.2605 14 6 3.3715 -6.4310 4.4393 15 8 3.7797 -7.7088 3.9468 16 6 4.7529 -8.3559 4.6413 17 6 5.1926 -9.6026 4.2221 18 6 4.5923 -10.2406 2.9959 19 8 5.1016 -9.5969 1.8262 20 14 5.0399 -12.0486 2.9543 21 6 6.1849 -10.2572 4.9265 22 6 6.7328 -9.6737 6.0560 23 9 7.6995 -10.3170 6.7465 24 6 6.2912 -8.4311 6.4784 25 6 5.3028 -7.7724 5.7733 26 6 1.6807 -4.5396 4.0463 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7488 -1.2494 34 1 1.6767 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 2.6299 -2.2378 3.0813 37 1 2.7454 -5.5909 1.3888 38 1 3.8106 -4.6380 2.5105 39 1 4.2261 -5.7544 4.4463 40 1 2.9852 -6.5388 5.4529 41 1 3.5079 -10.1354 3.0256 42 1 4.7569 -9.9569 0.9975 43 1 6.5161 -12.2056 2.9137 44 1 4.4888 -12.7359 4.1498 45 1 6.5301 -11.2264 4.5981 46 1 6.7192 -7.9772 7.3599 47 1 4.9584 -6.8034 6.1033 48 1 2.3584 -3.9731 4.6850 49 1 0.6843 -4.6459 4.4753 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_12398896_15734236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:16 Heat of formation + Delta-G solvation = -140.285010 kcal Electronic energy + Delta-G solvation = -31383.642631 eV Core-core repulsion = 26807.473388 eV Total energy + Delta-G solvation = -4576.169243 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.172 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.81155 -41.86260 -41.47068 -40.36924 -38.54518 -37.72315 -37.41841 -35.30189 -34.21800 -33.08611 -30.99303 -29.26166 -28.32186 -28.27820 -26.95479 -26.85542 -25.14903 -23.62517 -22.72750 -22.23214 -21.39253 -20.58591 -19.36026 -18.99801 -18.42285 -18.34424 -18.03170 -17.60279 -17.15136 -17.04111 -16.65751 -16.51458 -16.25377 -15.94263 -15.59095 -15.39224 -15.31627 -15.27120 -15.14196 -14.43807 -14.25264 -14.20308 -13.83506 -13.77863 -13.65884 -13.43921 -13.38722 -13.16780 -13.08647 -12.90645 -12.81997 -12.80667 -12.52344 -12.41047 -12.20538 -12.02052 -11.97472 -11.92652 -11.74800 -11.41259 -11.28678 -10.94913 -10.31945 -10.24726 -10.15612 -9.16672 -5.01036 -0.08911 0.10172 1.19869 1.25388 1.61729 1.87626 1.93429 1.98045 2.33993 3.09913 3.11866 3.23813 3.31491 3.38280 3.54723 3.61573 3.62707 3.75318 3.78611 3.84189 3.91304 3.98049 3.98317 4.07490 4.11585 4.17535 4.27226 4.44676 4.46674 4.52325 4.56098 4.57143 4.63746 4.67428 4.73682 4.78804 4.79930 4.88007 4.92272 4.94045 4.94379 4.97218 5.06099 5.09277 5.10519 5.33677 5.37491 5.48620 5.55745 5.61035 6.23061 6.41826 6.66646 7.43321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.650 3.350 7 O -0.566 6.566 8 N -0.702 5.702 9 C 0.141 3.859 10 H 0.123 0.877 11 C -0.145 4.145 12 C -0.105 4.105 13 H 0.110 0.890 14 C 0.067 3.933 15 O -0.295 6.295 16 C 0.151 3.849 17 C -0.081 4.081 18 C -0.059 4.059 19 O -0.540 6.540 20 Si 0.681 3.319 21 C -0.119 4.119 22 C 0.066 3.934 23 F -0.137 7.137 24 C -0.104 4.104 25 C -0.182 4.182 26 C -0.136 4.136 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.406 0.594 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.382 0.618 43 H -0.249 1.249 44 H -0.253 1.253 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.092 0.908 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 1.675 0.049 2.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.404 3.596 7 O -0.454 6.454 8 N -0.361 5.361 9 C 0.037 3.963 10 H 0.141 0.859 11 C -0.184 4.184 12 C -0.124 4.124 13 H 0.128 0.872 14 C -0.008 4.008 15 O -0.208 6.208 16 C 0.104 3.896 17 C -0.082 4.082 18 C -0.169 4.169 19 O -0.347 6.347 20 Si 0.582 3.418 21 C -0.137 4.137 22 C 0.046 3.954 23 F -0.115 7.115 24 C -0.123 4.123 25 C -0.200 4.200 26 C -0.174 4.174 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.241 0.759 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.229 0.771 43 H -0.174 1.174 44 H -0.177 1.177 45 H 0.157 0.843 46 H 0.161 0.839 47 H 0.160 0.840 48 H 0.110 0.890 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.176 1.118 0.273 2.461 hybrid contribution 0.501 0.758 0.966 1.326 sum -1.674 1.876 1.239 2.803 Atomic orbital electron populations 1.22523 0.93841 1.05046 1.02705 1.22117 0.94441 0.91549 0.81879 1.21880 1.02331 0.92378 1.03329 1.22523 1.01615 1.03472 0.96529 1.86305 1.71498 1.23504 1.46754 1.18166 0.78623 0.80545 0.82261 1.90917 1.41009 1.70511 1.42999 1.44751 1.55242 1.12217 1.23844 1.22522 0.99423 0.77550 0.96821 0.85947 1.23604 0.98894 0.96628 0.99280 1.22320 0.97606 0.96037 0.96423 0.87223 1.22901 0.97250 0.82801 0.97840 1.86156 1.50999 1.32407 1.51255 1.18686 0.89106 0.91232 0.90560 1.18446 0.98527 0.93474 0.97748 1.24451 1.00311 1.07161 0.85001 1.86509 1.70811 1.62478 1.14858 0.95249 0.81842 0.76343 0.88362 1.20853 0.96700 1.00840 0.95311 1.17389 0.91555 0.92925 0.93492 1.91524 1.60555 1.81201 1.78263 1.21015 0.97156 0.93342 1.00758 1.21162 1.00233 1.02055 0.96575 1.23402 1.02606 0.95203 0.96229 0.92137 0.90925 0.89423 0.91406 0.89919 0.91416 0.89396 0.90926 0.92126 0.75877 0.90030 0.89353 0.91524 0.91463 0.90404 0.77092 1.17430 1.17737 0.84304 0.83881 0.83989 0.88981 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.23 8.37 37.16 0.31 0.08 16 2 C 0.14 0.18 1.13 -90.62 -0.10 0.08 16 3 C -0.14 0.10 8.85 37.16 0.33 0.43 16 4 C -0.18 -0.26 8.37 37.16 0.31 0.06 16 5 O -0.37 -0.86 9.94 -40.31 -0.40 -1.26 16 6 C 0.65 1.70 8.06 54.05 0.44 2.13 16 7 O -0.57 -2.78 11.48 -19.28 -0.22 -3.01 16 8 N -0.70 0.35 5.36 -57.93 -0.31 0.04 16 9 C 0.14 -0.21 4.24 -67.12 -0.28 -0.49 16 10 H 0.12 -0.01 7.47 -51.93 -0.39 -0.40 16 11 C -0.15 0.22 7.43 -25.92 -0.19 0.03 16 12 C -0.10 0.28 4.01 -89.81 -0.36 -0.08 16 13 H 0.11 -0.27 8.14 -51.93 -0.42 -0.69 16 14 C 0.07 -0.13 4.58 37.15 0.17 0.04 16 15 O -0.30 -0.33 9.47 -19.57 -0.19 -0.51 16 16 C 0.15 0.30 6.66 -39.24 -0.26 0.04 16 17 C -0.08 -0.22 5.30 -104.48 -0.55 -0.78 16 18 C -0.06 -0.04 2.37 36.01 0.09 0.05 16 19 O -0.54 -0.50 12.86 -35.23 -0.45 -0.95 16 20 Si 0.68 -0.41 30.21 -169.99 -5.13 -5.54 16 21 C -0.12 -0.38 8.63 -39.53 -0.34 -0.72 16 22 C 0.07 0.21 7.30 -39.42 -0.29 -0.08 16 23 F -0.14 -0.57 17.27 2.25 0.04 -0.53 16 24 C -0.10 -0.12 10.02 -39.53 -0.40 -0.51 16 25 C -0.18 -0.08 9.03 -39.44 -0.36 -0.44 16 26 C -0.14 0.50 7.39 -25.92 -0.19 0.31 16 27 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.09 0.29 5.88 -51.93 -0.31 -0.02 16 30 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 32 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.09 0.31 5.88 -51.93 -0.31 0.00 16 34 H 0.07 0.00 8.14 -51.92 -0.42 -0.42 16 35 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.41 -1.05 8.84 -40.82 -0.36 -1.41 16 37 H 0.08 -0.02 8.14 -51.93 -0.42 -0.45 16 38 H 0.09 -0.13 7.90 -51.93 -0.41 -0.54 16 39 H 0.07 -0.18 7.36 -51.93 -0.38 -0.56 16 40 H 0.07 -0.21 7.66 -51.92 -0.40 -0.61 16 41 H 0.08 -0.03 7.83 -51.93 -0.41 -0.44 16 42 H 0.38 -1.54 8.74 45.56 0.40 -1.14 16 43 H -0.25 -0.57 6.74 56.52 0.38 -0.19 16 44 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 45 H 0.14 0.40 4.90 -52.49 -0.26 0.14 16 46 H 0.14 -0.15 8.06 -52.49 -0.42 -0.57 16 47 H 0.14 -0.32 6.30 -52.48 -0.33 -0.65 16 48 H 0.09 -0.44 8.08 -51.93 -0.42 -0.86 16 49 H 0.09 -0.34 8.14 -51.93 -0.42 -0.77 16 LS Contribution 398.48 15.07 6.00 6.00 Total: 0.00 -8.19 398.48 -9.78 -17.97 By element: Atomic # 1 Polarization: -4.90 SS G_CDS: -7.43 Total: -12.33 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.69 Total: 0.12 kcal Atomic # 7 Polarization: 0.35 SS G_CDS: -0.31 Total: 0.04 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -1.26 Total: -5.73 kcal Atomic # 9 Polarization: -0.57 SS G_CDS: 0.04 Total: -0.53 kcal Atomic # 14 Polarization: -0.41 SS G_CDS: -5.13 Total: -5.54 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -8.19 -9.78 -17.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_15734236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.315 kcal (2) G-P(sol) polarization free energy of solvation -8.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds