Wall clock time and date at job start Tue Mar 9 2021 13:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.52998 * 109.47024 * 240.00220 * 2 1 3 5 5 O 1.45198 * 109.47118 * 120.00676 * 2 1 3 6 6 C 1.34634 * 117.00454 * 59.99679 * 5 2 1 7 7 O 1.21514 * 119.99794 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00021 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.84688 * 335.91529 * 9 8 6 11 11 C 1.53775 * 113.61467 * 107.22238 * 9 8 6 12 12 C 1.53784 * 87.08028 * 139.98120 * 11 9 8 13 13 H 1.09004 * 113.68613 * 89.12337 * 12 11 9 14 14 C 1.52992 * 113.61437 * 220.01769 * 12 11 9 15 15 O 1.42902 * 109.47436 * 272.49391 * 14 12 11 16 16 C 1.35945 * 117.00257 * 179.97438 * 15 14 12 17 17 C 1.38682 * 120.03018 * 179.72293 * 16 15 14 18 18 C 1.50702 * 120.01536 * 0.03147 * 17 16 15 19 19 O 1.42898 * 109.47287 * 74.99807 * 18 17 16 20 20 Si 1.86304 * 109.47114 * 194.99785 * 18 17 16 21 21 C 1.38176 * 119.97003 * 179.79464 * 17 16 15 22 22 C 1.38436 * 120.02756 * 0.49216 * 21 17 16 23 23 F 1.35100 * 119.96797 * 179.76593 * 22 21 17 24 24 C 1.38475 * 120.06082 * 359.74025 * 22 21 17 25 25 C 1.38129 * 120.02678 * 0.02734 * 24 22 21 26 26 C 1.53781 * 113.61226 * 204.72300 * 9 8 6 27 27 H 1.09003 * 109.47056 * 299.99821 * 1 2 3 28 28 H 1.08999 * 109.46878 * 59.99793 * 1 2 3 29 29 H 1.08997 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46800 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46961 * 300.00429 * 3 2 1 32 32 H 1.09001 * 109.46524 * 60.00216 * 3 2 1 33 33 H 1.08998 * 109.47435 * 300.00287 * 4 2 1 34 34 H 1.09008 * 109.47422 * 60.00035 * 4 2 1 35 35 H 1.09000 * 109.47606 * 180.02562 * 4 2 1 36 36 H 0.97005 * 120.00161 * 359.72161 * 8 6 5 37 37 H 1.09003 * 113.61589 * 254.53047 * 11 9 8 38 38 H 1.09001 * 113.61847 * 25.43384 * 11 9 8 39 39 H 1.09003 * 109.47581 * 32.49772 * 14 12 11 40 40 H 1.09007 * 109.47141 * 152.49753 * 14 12 11 41 41 H 1.08997 * 109.46953 * 314.99543 * 18 17 16 42 42 H 0.96701 * 113.99977 * 180.02562 * 19 18 17 43 43 H 1.48505 * 109.99717 * 299.99521 * 20 18 17 44 44 H 1.48495 * 109.99950 * 61.31500 * 20 18 17 45 45 H 1.07995 * 119.98308 * 180.23607 * 21 17 16 46 46 H 1.07995 * 119.98376 * 179.97438 * 24 22 21 47 47 H 1.08005 * 120.00748 * 179.97438 * 25 24 22 48 48 H 1.08996 * 113.61882 * 334.56342 * 26 9 8 49 49 H 1.09003 * 113.61401 * 105.38906 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9516 -2.5098 0.5034 8 7 2.0673 -2.6655 2.4170 9 6 1.6741 -4.0671 2.5829 10 1 0.7574 -4.3156 2.0479 11 6 2.8211 -5.0617 2.3387 12 6 2.2773 -5.8613 3.5344 13 1 1.5262 -6.6023 3.2605 14 6 3.3715 -6.4310 4.4393 15 8 3.7797 -7.7088 3.9468 16 6 4.7529 -8.3559 4.6413 17 6 5.1926 -9.6026 4.2221 18 6 4.5923 -10.2406 2.9959 19 8 5.1016 -9.5969 1.8262 20 14 5.0399 -12.0486 2.9543 21 6 6.1849 -10.2572 4.9265 22 6 6.7328 -9.6737 6.0560 23 9 7.6995 -10.3170 6.7465 24 6 6.2912 -8.4311 6.4784 25 6 5.3028 -7.7724 5.7733 26 6 1.6807 -4.5396 4.0463 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7488 -1.2494 34 1 1.6767 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 2.6299 -2.2378 3.0813 37 1 2.7454 -5.5909 1.3888 38 1 3.8106 -4.6380 2.5105 39 1 4.2261 -5.7544 4.4463 40 1 2.9852 -6.5388 5.4529 41 1 3.5079 -10.1354 3.0256 42 1 4.7569 -9.9569 0.9975 43 1 6.5161 -12.2056 2.9137 44 1 4.4888 -12.7359 4.1498 45 1 6.5301 -11.2264 4.5981 46 1 6.7192 -7.9772 7.3599 47 1 4.9584 -6.8034 6.1033 48 1 2.3584 -3.9731 4.6850 49 1 0.6843 -4.6459 4.4753 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12398896_15734236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:15 Heat of formation + Delta-G solvation = -138.546994 kcal Electronic energy + Delta-G solvation = -31383.567265 eV Core-core repulsion = 26807.473388 eV Total energy + Delta-G solvation = -4576.093877 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.172 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.04621 -41.93365 -41.51613 -40.30925 -38.58284 -37.81507 -37.45508 -35.41393 -34.24174 -33.15057 -31.04393 -29.19256 -28.38218 -28.31591 -26.95853 -26.71689 -25.14844 -23.69920 -22.80602 -22.23174 -21.40668 -20.52900 -19.39498 -19.05471 -18.46019 -18.43765 -18.13434 -17.68825 -17.20808 -17.05882 -16.72945 -16.60744 -16.23364 -15.96789 -15.66112 -15.46556 -15.38795 -15.31020 -15.23311 -14.50810 -14.26971 -14.21065 -13.90855 -13.78413 -13.47302 -13.41572 -13.36941 -13.22278 -13.09709 -12.94496 -12.88048 -12.81925 -12.52700 -12.46300 -12.24059 -12.12586 -11.98493 -11.86727 -11.66156 -11.40790 -11.27462 -11.11383 -10.39916 -10.27545 -10.15525 -9.26410 -5.01425 -0.18015 -0.02441 1.16400 1.24682 1.58381 1.72443 1.90230 2.01725 2.25519 3.00572 3.14408 3.32510 3.40981 3.45801 3.50908 3.72910 3.75399 3.75652 3.79302 3.82807 3.87053 3.93086 4.00946 4.13338 4.23179 4.28549 4.41875 4.45174 4.50948 4.59783 4.61526 4.63729 4.71274 4.74945 4.79293 4.80122 4.85491 4.86148 4.86226 4.90220 4.96959 5.02168 5.04886 5.08163 5.18657 5.25660 5.31132 5.45336 5.50999 5.59246 6.24987 6.39600 6.89586 7.33448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.642 3.358 7 O -0.595 6.595 8 N -0.689 5.689 9 C 0.133 3.867 10 H 0.104 0.896 11 C -0.146 4.146 12 C -0.098 4.098 13 H 0.106 0.894 14 C 0.060 3.940 15 O -0.307 6.307 16 C 0.145 3.855 17 C -0.105 4.105 18 C -0.065 4.065 19 O -0.559 6.559 20 Si 0.771 3.229 21 C -0.137 4.137 22 C 0.041 3.959 23 F -0.149 7.149 24 C -0.101 4.101 25 C -0.175 4.175 26 C -0.118 4.118 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.418 0.582 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.401 0.599 43 H -0.293 1.293 44 H -0.289 1.289 45 H 0.131 0.869 46 H 0.166 0.834 47 H 0.174 0.826 48 H 0.112 0.888 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 3.350 0.814 4.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.285 6.285 6 C 0.396 3.604 7 O -0.486 6.486 8 N -0.349 5.349 9 C 0.030 3.970 10 H 0.122 0.878 11 C -0.185 4.185 12 C -0.117 4.117 13 H 0.124 0.876 14 C -0.014 4.014 15 O -0.220 6.220 16 C 0.098 3.902 17 C -0.106 4.106 18 C -0.175 4.175 19 O -0.369 6.369 20 Si 0.677 3.323 21 C -0.155 4.155 22 C 0.022 3.978 23 F -0.128 7.128 24 C -0.119 4.119 25 C -0.193 4.193 26 C -0.156 4.156 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.255 0.745 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.252 0.748 43 H -0.221 1.221 44 H -0.216 1.216 45 H 0.148 0.852 46 H 0.184 0.816 47 H 0.192 0.808 48 H 0.130 0.870 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.642 2.808 1.031 3.991 hybrid contribution 0.644 0.265 0.706 0.992 sum -1.999 3.073 1.737 4.056 Atomic orbital electron populations 1.22472 0.93984 1.03710 1.03531 1.22342 0.94496 0.92557 0.81501 1.21892 1.02424 0.90908 1.04268 1.22476 1.01580 1.02272 0.97435 1.86308 1.71556 1.23410 1.47245 1.18454 0.78604 0.80688 0.82680 1.90904 1.42413 1.71047 1.44218 1.44775 1.54672 1.12340 1.23076 1.22581 0.98751 0.77006 0.98688 0.87756 1.23595 0.99015 0.96767 0.99100 1.22248 0.97368 0.96292 0.95782 0.87583 1.23150 0.97775 0.81764 0.98744 1.86146 1.50643 1.33615 1.51632 1.18846 0.89269 0.91109 0.90982 1.18760 0.98790 0.94393 0.98624 1.24581 1.00862 1.07514 0.84503 1.86455 1.71375 1.63103 1.15937 0.94371 0.77934 0.74050 0.85922 1.20917 0.97579 1.00990 0.96032 1.17690 0.92098 0.94067 0.93968 1.91483 1.61144 1.81626 1.78533 1.21303 0.96929 0.92377 1.01322 1.21512 0.99274 1.02956 0.95574 1.23345 1.03529 0.94029 0.94651 0.91867 0.89507 0.91765 0.91241 0.88344 0.91115 0.91797 0.89475 0.92045 0.74503 0.91878 0.89033 0.90374 0.89533 0.89228 0.74787 1.22146 1.21557 0.85175 0.81625 0.80827 0.86950 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 2 C 0.13 0.35 1.13 -10.79 -0.01 0.34 16 3 C -0.14 0.31 8.85 71.98 0.64 0.95 16 4 C -0.18 -0.61 8.37 71.98 0.60 0.00 16 5 O -0.37 -1.88 9.94 -55.44 -0.55 -2.43 16 6 C 0.64 3.90 8.06 129.79 1.05 4.95 16 7 O -0.59 -6.94 11.48 19.80 0.23 -6.71 16 8 N -0.69 0.72 5.36 -567.61 -3.04 -2.33 16 9 C 0.13 -0.39 4.24 45.51 0.19 -0.19 16 10 H 0.10 0.11 7.47 -2.39 -0.02 0.09 16 11 C -0.15 0.44 7.43 31.12 0.23 0.67 16 12 C -0.10 0.62 4.01 -10.27 -0.04 0.58 16 13 H 0.11 -0.57 8.14 -2.38 -0.02 -0.59 16 14 C 0.06 -0.36 4.58 71.98 0.33 -0.03 16 15 O -0.31 -0.41 9.47 -92.93 -0.88 -1.29 16 16 C 0.14 0.50 6.66 22.49 0.15 0.65 16 17 C -0.10 -0.66 5.30 -19.77 -0.10 -0.76 16 18 C -0.06 -0.12 2.37 71.24 0.17 0.05 16 19 O -0.56 -1.22 12.86 -148.98 -1.92 -3.14 16 20 Si 0.77 0.05 30.21 68.60 2.07 2.12 16 21 C -0.14 -1.12 8.63 22.30 0.19 -0.93 16 22 C 0.04 0.30 7.30 22.37 0.16 0.47 16 23 F -0.15 -1.48 17.27 44.97 0.78 -0.70 16 24 C -0.10 -0.16 10.02 22.30 0.22 0.06 16 25 C -0.17 0.10 9.03 22.36 0.20 0.30 16 26 C -0.12 1.07 7.39 31.12 0.23 1.30 16 27 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 30 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 34 H 0.09 -0.01 8.14 -2.38 -0.02 -0.03 16 35 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.42 -2.54 8.84 -92.70 -0.82 -3.36 16 37 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.09 -0.33 7.90 -2.39 -0.02 -0.34 16 39 H 0.08 -0.62 7.36 -2.39 -0.02 -0.64 16 40 H 0.09 -0.81 7.66 -2.38 -0.02 -0.83 16 41 H 0.09 -0.08 7.83 -2.39 -0.02 -0.10 16 42 H 0.40 -3.25 8.74 -74.06 -0.65 -3.90 16 43 H -0.29 -2.08 6.74 99.48 0.67 -1.41 16 44 H -0.29 -1.63 7.11 99.48 0.71 -0.93 16 45 H 0.13 1.11 4.90 -2.91 -0.01 1.10 16 46 H 0.17 -0.60 8.06 -2.91 -0.02 -0.62 16 47 H 0.17 -1.33 6.30 -2.91 -0.02 -1.35 16 48 H 0.11 -1.43 8.08 -2.39 -0.02 -1.45 16 49 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 Total: 0.00 -22.00 398.48 1.02 -20.97 By element: Atomic # 1 Polarization: -14.49 SS G_CDS: -0.48 Total: -14.97 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 4.81 Total: 8.48 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -3.04 Total: -2.33 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -3.12 Total: -13.57 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.78 Total: -0.70 kcal Atomic # 14 Polarization: 0.05 SS G_CDS: 2.07 Total: 2.12 kcal Total: -22.00 1.02 -20.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_15734236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.573 kcal (2) G-P(sol) polarization free energy of solvation -21.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds