Wall clock time and date at job start Tue Mar 9 2021 13:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86298 * 109.47023 * 2 1 4 4 C 1.86304 * 109.47302 * 239.99973 * 2 1 3 5 5 C 1.86303 * 109.47375 * 120.00177 * 2 1 3 6 6 O 1.42895 * 109.46949 * 66.19484 * 5 2 1 7 7 C 1.35941 * 117.00155 * 77.74961 * 6 5 2 8 8 C 1.38686 * 120.03114 * 6.18099 * 7 6 5 9 9 C 1.38169 * 119.97161 * 179.97438 * 8 7 6 10 10 C 1.38423 * 120.03075 * 359.97438 * 9 8 7 11 11 F 1.35103 * 119.97051 * 179.97438 * 10 9 8 12 12 C 1.38482 * 120.06224 * 359.79433 * 10 9 8 13 13 C 1.38125 * 120.02406 * 0.45746 * 12 10 9 14 14 C 1.50709 * 120.01115 * 179.79378 * 13 12 10 15 15 O 1.42898 * 109.46793 * 254.72619 * 14 13 12 16 16 Si 1.86299 * 109.47174 * 14.72629 * 14 13 12 17 17 H 1.48505 * 109.46895 * 59.99831 * 16 14 13 18 18 H 1.48501 * 109.46884 * 299.99938 * 16 14 13 19 19 H 1.48496 * 109.46998 * 179.97438 * 16 14 13 20 20 H 1.08997 * 109.47072 * 299.99964 * 1 2 3 21 21 H 1.09000 * 109.46950 * 59.99885 * 1 2 3 22 22 H 1.09001 * 109.46810 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47212 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47351 * 299.99869 * 3 2 1 25 25 H 1.08997 * 109.47167 * 60.00094 * 3 2 1 26 26 H 1.08995 * 109.46879 * 294.74137 * 4 2 1 27 27 H 1.09004 * 109.46901 * 54.74286 * 4 2 1 28 28 H 1.08994 * 109.47020 * 174.73313 * 4 2 1 29 29 H 1.09008 * 109.46642 * 306.19506 * 5 2 1 30 30 H 1.08994 * 109.46902 * 186.19861 * 5 2 1 31 31 H 1.08003 * 120.01374 * 359.97438 * 8 7 6 32 32 H 1.08006 * 119.98136 * 179.97438 * 9 8 7 33 33 H 1.07999 * 119.98379 * 180.25489 * 12 10 9 34 34 H 1.08994 * 109.47129 * 134.72786 * 14 13 12 35 35 H 0.96701 * 114.00354 * 299.99367 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4841 -0.8783 1.5211 6 8 2.1302 -2.2609 1.4506 7 6 2.8850 -3.0507 0.6416 8 6 4.0192 -2.5364 0.0314 9 6 4.7858 -3.3404 -0.7902 10 6 4.4223 -4.6588 -1.0041 11 9 5.1725 -5.4438 -1.8081 12 6 3.2927 -5.1751 -0.3917 13 6 2.5217 -4.3721 0.4260 14 6 1.2898 -4.9330 1.0886 15 8 0.1250 -4.4376 0.4255 16 14 1.3204 -6.7928 0.9838 17 1 2.5310 -7.3075 1.6730 18 1 1.3482 -7.2078 -0.4417 19 1 0.1069 -7.3454 1.6373 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.5740 1.7565 -0.0005 24 1 2.1207 2.2703 -0.8900 25 1 2.1206 2.2703 0.8900 26 1 2.1997 -1.9294 -1.4753 27 1 2.0459 -0.4216 -2.4087 28 1 3.5699 -0.7972 -1.5695 29 1 2.0330 -0.4324 2.4077 30 1 3.5684 -0.7831 1.5782 31 1 4.3032 -1.5079 0.1984 32 1 5.6689 -2.9399 -1.2658 33 1 3.0126 -6.2051 -0.5562 34 1 1.2694 -4.6283 2.1349 35 1 0.0434 -3.4742 0.4406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_12398896_3095236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:37:53 Heat of formation + Delta-G solvation = -125.025423 kcal Electronic energy + Delta-G solvation = -18166.465068 eV Core-core repulsion = 15203.219099 eV Total energy + Delta-G solvation = -2963.245969 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 258.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.75216 -41.54505 -38.51734 -37.39452 -33.04618 -30.91007 -29.85710 -28.60731 -28.48071 -27.89182 -26.82907 -23.44028 -22.73079 -19.39091 -18.55166 -18.21176 -17.58089 -16.99770 -16.42473 -16.32186 -15.79248 -15.48815 -15.41284 -14.70100 -14.40105 -14.12095 -14.05812 -13.92402 -13.84309 -13.78862 -13.47248 -13.39070 -13.20845 -13.01531 -12.72209 -12.39935 -12.16472 -11.76303 -11.21068 -11.06556 -11.05754 -10.98083 -10.79569 -10.13567 -9.00309 -0.01253 0.11667 1.22454 1.31000 1.50951 1.54925 1.58797 1.60840 2.00776 2.24444 2.33947 2.43770 3.21559 3.48945 3.58306 3.87909 3.89995 3.99582 4.17200 4.27931 4.45636 4.52556 4.53877 4.55133 4.63727 4.63914 4.65248 4.67897 4.70792 4.98790 5.04027 5.12279 5.29795 5.41741 5.46187 5.59313 6.19003 6.60386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.444 4.444 2 Si 0.989 3.011 3 C -0.449 4.449 4 C -0.452 4.452 5 C -0.247 4.247 6 O -0.290 6.290 7 C 0.127 3.873 8 C -0.171 4.171 9 C -0.110 4.110 10 C 0.070 3.930 11 F -0.137 7.137 12 C -0.121 4.121 13 C -0.119 4.119 14 C -0.083 4.083 15 O -0.535 6.535 16 Si 1.010 2.990 17 H -0.247 1.247 18 H -0.251 1.251 19 H -0.253 1.253 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.082 0.918 35 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 3.820 1.341 4.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.552 4.552 2 Si 1.186 2.814 3 C -0.557 4.557 4 C -0.559 4.559 5 C -0.367 4.367 6 O -0.203 6.203 7 C 0.081 3.919 8 C -0.189 4.189 9 C -0.129 4.129 10 C 0.051 3.949 11 F -0.116 7.116 12 C -0.139 4.139 13 C -0.121 4.121 14 C -0.191 4.191 15 O -0.340 6.340 16 Si 0.829 3.171 17 H -0.171 1.171 18 H -0.175 1.175 19 H -0.177 1.177 20 H 0.090 0.910 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.100 0.900 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.300 2.210 1.332 2.598 hybrid contribution 0.596 1.373 -0.037 1.497 sum 0.896 3.583 1.295 3.914 Atomic orbital electron populations 1.26024 1.19573 1.04937 1.04709 0.79842 0.68737 0.66932 0.65923 1.26080 1.06347 1.18285 1.05031 1.26469 1.06256 1.08349 1.14871 1.28246 1.05932 0.84632 1.17915 1.85997 1.52861 1.19850 1.61605 1.18768 0.90888 0.90575 0.91716 1.21144 0.95732 1.01358 1.00711 1.20974 1.00804 0.92012 0.99119 1.17441 0.92442 0.89521 0.95506 1.91524 1.75109 1.73960 1.71002 1.20949 0.94471 1.01039 0.97483 1.19413 0.99318 0.91844 1.01476 1.25211 0.83314 1.12835 0.97769 1.86708 1.41557 1.26787 1.78973 0.84522 0.80839 0.70554 0.81154 1.17055 1.17455 1.17669 0.91043 0.90919 0.90761 0.91073 0.90593 0.90937 0.90736 0.90904 0.90867 0.87006 0.90809 0.83818 0.84086 0.83967 0.90006 0.78367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.12 8.65 101.05 0.87 2.00 16 2 Si 0.99 -3.87 11.68 -169.99 -1.99 -5.85 16 3 C -0.45 1.45 8.65 101.05 0.87 2.33 16 4 C -0.45 0.96 7.03 101.05 0.71 1.67 16 5 C -0.25 0.74 5.31 101.05 0.54 1.27 16 6 O -0.29 0.17 8.70 -19.55 -0.17 0.00 16 7 C 0.13 0.04 5.09 -39.24 -0.20 -0.16 16 8 C -0.17 0.12 5.61 -39.44 -0.22 -0.11 16 9 C -0.11 -0.02 10.02 -39.54 -0.40 -0.41 16 10 C 0.07 0.14 7.30 -39.42 -0.29 -0.15 16 11 F -0.14 -0.44 17.27 2.25 0.04 -0.40 16 12 C -0.12 -0.21 8.64 -39.53 -0.34 -0.56 16 13 C -0.12 -0.15 5.28 -104.48 -0.55 -0.70 16 14 C -0.08 -0.07 2.33 36.01 0.08 0.02 16 15 O -0.53 -0.77 12.65 -35.23 -0.45 -1.21 16 16 Si 1.01 0.85 25.74 -169.99 -4.37 -3.53 16 17 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 18 H -0.25 -0.38 6.74 56.52 0.38 0.00 16 19 H -0.25 -0.43 7.11 56.52 0.40 -0.03 16 20 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 21 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 22 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 23 H 0.07 -0.24 7.96 -51.93 -0.41 -0.66 16 24 H 0.07 -0.21 7.96 -51.93 -0.41 -0.63 16 25 H 0.07 -0.24 7.96 -51.93 -0.41 -0.65 16 26 H 0.07 -0.06 6.24 -51.93 -0.32 -0.38 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.19 6.54 -51.93 -0.34 -0.53 16 29 H 0.11 -0.45 7.96 -51.92 -0.41 -0.86 16 30 H 0.07 -0.28 6.07 -51.93 -0.32 -0.59 16 31 H 0.14 -0.45 4.74 -52.48 -0.25 -0.70 16 32 H 0.14 -0.24 8.06 -52.48 -0.42 -0.66 16 33 H 0.14 0.14 4.89 -52.49 -0.26 -0.12 16 34 H 0.08 -0.02 7.83 -51.93 -0.41 -0.43 16 35 H 0.37 -0.38 8.60 45.56 0.39 0.02 16 LS Contribution 287.57 15.07 4.33 4.33 Total: 0.00 -4.17 287.57 -5.57 -9.73 By element: Atomic # 1 Polarization: -4.21 SS G_CDS: -4.05 Total: -8.26 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 1.08 Total: 5.20 kcal Atomic # 8 Polarization: -0.60 SS G_CDS: -0.62 Total: -1.22 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.04 Total: -0.40 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: -6.36 Total: -9.38 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -4.17 -5.57 -9.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_3095236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.291 kcal (2) G-P(sol) polarization free energy of solvation -4.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds