Wall clock time and date at job start Tue Mar 9 2021 13:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86298 * 109.47023 * 2 1 4 4 C 1.86304 * 109.47302 * 239.99973 * 2 1 3 5 5 C 1.86303 * 109.47375 * 120.00177 * 2 1 3 6 6 O 1.42895 * 109.46949 * 66.19484 * 5 2 1 7 7 C 1.35941 * 117.00155 * 77.74961 * 6 5 2 8 8 C 1.38686 * 120.03114 * 6.18099 * 7 6 5 9 9 C 1.38169 * 119.97161 * 179.97438 * 8 7 6 10 10 C 1.38423 * 120.03075 * 359.97438 * 9 8 7 11 11 F 1.35103 * 119.97051 * 179.97438 * 10 9 8 12 12 C 1.38482 * 120.06224 * 359.79433 * 10 9 8 13 13 C 1.38125 * 120.02406 * 0.45746 * 12 10 9 14 14 C 1.50709 * 120.01115 * 179.79378 * 13 12 10 15 15 O 1.42898 * 109.46793 * 254.72619 * 14 13 12 16 16 Si 1.86299 * 109.47174 * 14.72629 * 14 13 12 17 17 H 1.48505 * 109.46895 * 59.99831 * 16 14 13 18 18 H 1.48501 * 109.46884 * 299.99938 * 16 14 13 19 19 H 1.48496 * 109.46998 * 179.97438 * 16 14 13 20 20 H 1.08997 * 109.47072 * 299.99964 * 1 2 3 21 21 H 1.09000 * 109.46950 * 59.99885 * 1 2 3 22 22 H 1.09001 * 109.46810 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47212 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47351 * 299.99869 * 3 2 1 25 25 H 1.08997 * 109.47167 * 60.00094 * 3 2 1 26 26 H 1.08995 * 109.46879 * 294.74137 * 4 2 1 27 27 H 1.09004 * 109.46901 * 54.74286 * 4 2 1 28 28 H 1.08994 * 109.47020 * 174.73313 * 4 2 1 29 29 H 1.09008 * 109.46642 * 306.19506 * 5 2 1 30 30 H 1.08994 * 109.46902 * 186.19861 * 5 2 1 31 31 H 1.08003 * 120.01374 * 359.97438 * 8 7 6 32 32 H 1.08006 * 119.98136 * 179.97438 * 9 8 7 33 33 H 1.07999 * 119.98379 * 180.25489 * 12 10 9 34 34 H 1.08994 * 109.47129 * 134.72786 * 14 13 12 35 35 H 0.96701 * 114.00354 * 299.99367 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4841 -0.8783 1.5211 6 8 2.1302 -2.2609 1.4506 7 6 2.8850 -3.0507 0.6416 8 6 4.0192 -2.5364 0.0314 9 6 4.7858 -3.3404 -0.7902 10 6 4.4223 -4.6588 -1.0041 11 9 5.1725 -5.4438 -1.8081 12 6 3.2927 -5.1751 -0.3917 13 6 2.5217 -4.3721 0.4260 14 6 1.2898 -4.9330 1.0886 15 8 0.1250 -4.4376 0.4255 16 14 1.3204 -6.7928 0.9838 17 1 2.5310 -7.3075 1.6730 18 1 1.3482 -7.2078 -0.4417 19 1 0.1069 -7.3454 1.6373 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.5740 1.7565 -0.0005 24 1 2.1207 2.2703 -0.8900 25 1 2.1206 2.2703 0.8900 26 1 2.1997 -1.9294 -1.4753 27 1 2.0459 -0.4216 -2.4087 28 1 3.5699 -0.7972 -1.5695 29 1 2.0330 -0.4324 2.4077 30 1 3.5684 -0.7831 1.5782 31 1 4.3032 -1.5079 0.1984 32 1 5.6689 -2.9399 -1.2658 33 1 3.0126 -6.2051 -0.5562 34 1 1.2694 -4.6283 2.1349 35 1 0.0434 -3.4742 0.4406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12398896_3095236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:37:53 Heat of formation + Delta-G solvation = -117.698588 kcal Electronic energy + Delta-G solvation = -18166.147353 eV Core-core repulsion = 15203.219099 eV Total energy + Delta-G solvation = -2962.928254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 258.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.89988 -41.50576 -38.47883 -37.44190 -33.05034 -30.89252 -29.62032 -28.35088 -28.27017 -27.70626 -26.84664 -23.41824 -22.76147 -19.34965 -18.59073 -18.23768 -17.63115 -16.94277 -16.44990 -16.39155 -15.74596 -15.51517 -15.43806 -14.70154 -14.19611 -14.05138 -13.89844 -13.79601 -13.70646 -13.62605 -13.27875 -13.19155 -13.00586 -12.92630 -12.65888 -12.34007 -12.22638 -11.89611 -11.22460 -11.09392 -10.82781 -10.75488 -10.62686 -10.14168 -8.98265 -0.02055 0.08781 1.15741 1.45914 1.48475 1.59895 1.78222 1.87047 1.91113 2.38588 2.41699 2.60989 3.17880 3.49704 3.60305 3.89133 4.01872 4.03026 4.26267 4.34851 4.55500 4.66501 4.75598 4.79557 4.80942 4.83968 4.85700 4.86679 4.91239 5.00197 5.05540 5.12952 5.57169 5.57467 5.66000 5.66257 6.27725 6.65588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.063 2.937 3 C -0.460 4.460 4 C -0.471 4.471 5 C -0.265 4.265 6 O -0.296 6.296 7 C 0.129 3.871 8 C -0.169 4.169 9 C -0.108 4.108 10 C 0.045 3.955 11 F -0.150 7.150 12 C -0.134 4.134 13 C -0.133 4.133 14 C -0.082 4.082 15 O -0.548 6.548 16 Si 1.025 2.975 17 H -0.243 1.243 18 H -0.266 1.266 19 H -0.266 1.266 20 H 0.073 0.927 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.141 0.859 34 H 0.094 0.906 35 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 5.245 2.049 5.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.255 2.745 3 C -0.568 4.568 4 C -0.577 4.577 5 C -0.384 4.384 6 O -0.209 6.209 7 C 0.082 3.918 8 C -0.187 4.187 9 C -0.127 4.127 10 C 0.026 3.974 11 F -0.129 7.129 12 C -0.152 4.152 13 C -0.134 4.134 14 C -0.191 4.191 15 O -0.355 6.355 16 Si 0.846 3.154 17 H -0.166 1.166 18 H -0.191 1.191 19 H -0.191 1.191 20 H 0.092 0.908 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.144 0.856 30 H 0.106 0.894 31 H 0.189 0.811 32 H 0.177 0.823 33 H 0.158 0.842 34 H 0.112 0.888 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.781 3.635 2.035 4.239 hybrid contribution 0.403 0.979 -0.262 1.091 sum 1.184 4.615 1.773 5.084 Atomic orbital electron populations 1.26282 1.21647 1.04628 1.04614 0.78716 0.66428 0.65532 0.63833 1.26199 1.06889 1.18699 1.05015 1.26721 1.06915 1.07752 1.16285 1.28561 1.07185 0.83375 1.19249 1.86002 1.52823 1.20917 1.61142 1.18846 0.91076 0.90382 0.91494 1.21448 0.95020 1.02441 0.99798 1.21223 1.01340 0.91254 0.98860 1.17700 0.92939 0.90386 0.96355 1.91483 1.75458 1.74464 1.71511 1.21035 0.94869 1.01292 0.98015 1.19468 0.99500 0.92549 1.01883 1.25174 0.83094 1.12468 0.98321 1.86675 1.41852 1.27803 1.79197 0.84319 0.80215 0.70893 0.79951 1.16612 1.19069 1.19063 0.90797 0.91391 0.91207 0.90450 0.91029 0.90588 0.92177 0.91299 0.90198 0.85557 0.89436 0.81140 0.82283 0.84157 0.88839 0.77251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.46 8.65 113.37 0.98 3.44 16 2 Si 1.06 -9.53 11.68 68.60 0.80 -8.73 16 3 C -0.46 3.67 8.65 113.37 0.98 4.65 16 4 C -0.47 2.22 7.03 113.37 0.80 3.01 16 5 C -0.26 2.08 5.31 113.37 0.60 2.68 16 6 O -0.30 0.66 8.70 -92.88 -0.81 -0.15 16 7 C 0.13 0.02 5.09 22.49 0.11 0.14 16 8 C -0.17 0.40 5.61 22.36 0.13 0.53 16 9 C -0.11 0.00 10.02 22.30 0.22 0.22 16 10 C 0.05 0.22 7.30 22.37 0.16 0.39 16 11 F -0.15 -1.18 17.27 44.97 0.78 -0.40 16 12 C -0.13 -0.64 8.64 22.30 0.19 -0.45 16 13 C -0.13 -0.41 5.28 -19.77 -0.10 -0.51 16 14 C -0.08 -0.18 2.33 71.24 0.17 -0.01 16 15 O -0.55 -1.92 12.65 -148.98 -1.89 -3.80 16 16 Si 1.02 2.95 25.74 68.60 1.77 4.72 16 17 H -0.24 -0.46 7.11 99.48 0.71 0.24 16 18 H -0.27 -1.34 6.74 99.48 0.67 -0.67 16 19 H -0.27 -1.26 7.11 99.48 0.71 -0.55 16 20 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 21 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 22 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 23 H 0.08 -0.68 7.96 -2.38 -0.02 -0.70 16 24 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 25 H 0.07 -0.63 7.96 -2.39 -0.02 -0.65 16 26 H 0.06 -0.08 6.24 -2.39 -0.01 -0.09 16 27 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 28 H 0.08 -0.50 6.54 -2.39 -0.02 -0.52 16 29 H 0.13 -1.30 7.96 -2.38 -0.02 -1.32 16 30 H 0.09 -0.90 6.07 -2.39 -0.01 -0.91 16 31 H 0.17 -1.46 4.74 -2.91 -0.01 -1.47 16 32 H 0.16 -0.68 8.06 -2.91 -0.02 -0.71 16 33 H 0.14 0.55 4.89 -2.91 -0.01 0.54 16 34 H 0.09 -0.05 7.83 -2.39 -0.02 -0.07 16 35 H 0.38 -0.62 8.60 -74.06 -0.64 -1.26 16 Total: 0.00 -10.36 287.57 6.07 -4.29 By element: Atomic # 1 Polarization: -11.18 SS G_CDS: 1.18 Total: -10.00 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 4.24 Total: 14.08 kcal Atomic # 8 Polarization: -1.26 SS G_CDS: -2.69 Total: -3.95 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.78 Total: -0.40 kcal Atomic # 14 Polarization: -6.58 SS G_CDS: 2.57 Total: -4.02 kcal Total: -10.36 6.07 -4.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_3095236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.410 kcal (2) G-P(sol) polarization free energy of solvation -10.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds