Wall clock time and date at job start Tue Mar 9 2021 13:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38123 * 119.96782 * 2 1 4 4 C 1.38753 * 119.94084 * 180.02562 * 3 2 1 5 5 O 1.35905 * 120.05253 * 180.02562 * 4 3 2 6 6 C 1.42898 * 117.00161 * 359.97438 * 5 4 3 7 7 C 1.52999 * 109.47028 * 180.02562 * 6 5 4 8 8 H 1.09005 * 112.84599 * 316.19538 * 7 6 5 9 9 C 1.53786 * 113.61758 * 87.49995 * 7 6 5 10 10 C 1.53783 * 87.08046 * 139.98207 * 9 7 6 11 11 H 1.08995 * 113.61357 * 89.11339 * 10 9 7 12 12 O 1.42904 * 113.61314 * 220.02345 * 10 9 7 13 13 C 1.42901 * 113.99416 * 247.49859 * 12 10 9 14 14 C 1.52995 * 109.47568 * 59.99900 * 13 12 10 15 15 C 1.53003 * 109.46778 * 180.02562 * 13 12 10 16 16 C 1.53000 * 109.46989 * 299.99571 * 13 12 10 17 17 C 1.53774 * 113.61454 * 185.00091 * 7 6 5 18 18 C 1.38706 * 119.89217 * 359.97438 * 4 3 2 19 19 C 1.50699 * 120.03108 * 179.97438 * 18 4 3 20 20 O 1.42898 * 109.46964 * 285.00028 * 19 18 4 21 21 Si 1.86301 * 109.47146 * 164.99946 * 19 18 4 22 22 C 1.38170 * 119.93941 * 0.25332 * 18 4 3 23 23 C 1.38246 * 120.05914 * 359.47206 * 22 18 4 24 24 H 1.08997 * 109.46935 * 90.00135 * 1 2 3 25 25 H 1.08999 * 109.46330 * 210.00418 * 1 2 3 26 26 H 1.09000 * 109.47209 * 329.99472 * 1 2 3 27 27 H 1.08002 * 120.02924 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.46808 * 299.99655 * 6 5 4 29 29 H 1.08995 * 109.47282 * 60.00138 * 6 5 4 30 30 H 1.08997 * 113.61436 * 254.52901 * 9 7 6 31 31 H 1.08995 * 113.60705 * 25.43462 * 9 7 6 32 32 H 1.09000 * 109.46799 * 59.99378 * 14 13 12 33 33 H 1.08998 * 109.47374 * 179.97438 * 14 13 12 34 34 H 1.09000 * 109.46993 * 300.00259 * 14 13 12 35 35 H 1.09002 * 109.47210 * 59.99816 * 15 13 12 36 36 H 1.08998 * 109.47221 * 180.02562 * 15 13 12 37 37 H 1.09000 * 109.46801 * 300.00140 * 15 13 12 38 38 H 1.09002 * 109.47282 * 60.00278 * 16 13 12 39 39 H 1.09003 * 109.47210 * 180.02562 * 16 13 12 40 40 H 1.09002 * 109.47410 * 300.00435 * 16 13 12 41 41 H 1.09005 * 113.61667 * 334.56457 * 17 7 6 42 42 H 1.09003 * 113.61989 * 105.46685 * 17 7 6 43 43 H 1.09002 * 109.46959 * 44.99998 * 19 18 4 44 44 H 0.96698 * 113.99898 * 299.99550 * 20 19 18 45 45 H 1.48503 * 110.00152 * 180.02562 * 21 19 18 46 46 H 1.48498 * 110.00118 * 301.32243 * 21 19 18 47 47 H 1.08010 * 119.96909 * 179.74525 * 22 18 4 48 48 H 1.07995 * 119.94348 * 180.25354 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1966 0.0000 4 6 3.5846 1.1959 -0.0005 5 8 4.2657 2.3719 0.0000 6 6 3.4891 3.5715 0.0005 7 6 4.4229 4.7835 0.0004 8 1 5.2557 4.6762 0.6954 9 6 4.8470 5.2343 -1.4074 10 6 4.6854 6.6797 -0.9076 11 1 5.5909 7.0913 -0.4618 12 8 4.0911 7.5546 -1.8686 13 6 4.9768 8.5600 -2.3652 14 6 6.1764 7.8940 -3.0421 15 6 4.2380 9.4341 -3.3806 16 6 5.4640 9.4291 -1.2040 17 6 3.6870 6.1281 0.1238 18 6 4.2753 -0.0069 -0.0005 19 6 5.7822 -0.0113 -0.0017 20 8 6.2585 0.3354 -1.3036 21 14 6.3987 -1.7095 0.4532 22 6 3.5803 -1.2012 -0.0053 23 6 2.1979 -1.1979 0.0010 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6570 2.1319 -0.0004 28 1 2.8604 3.5976 -0.8895 29 1 2.8604 3.5969 0.8905 30 1 5.8746 4.9717 -1.6589 31 1 4.1360 4.9597 -2.1864 32 1 5.8292 7.2748 -3.8692 33 1 6.8517 8.6610 -3.4212 34 1 6.7025 7.2716 -2.3183 35 1 3.3836 9.9087 -2.8980 36 1 4.9136 10.2008 -3.7598 37 1 3.8904 8.8152 -4.2078 38 1 5.9902 8.8067 -0.4802 39 1 6.1393 10.1963 -1.5828 40 1 4.6094 9.9036 -0.7218 41 1 2.6587 6.0978 -0.2368 42 1 3.7779 6.5870 1.1083 43 1 6.1482 0.7146 0.7244 44 1 5.9709 -0.2690 -2.0015 45 1 7.8836 -1.7269 0.4562 46 1 5.8840 -2.0950 1.7917 47 1 4.1177 -2.1381 -0.0095 48 1 1.6566 -2.1324 0.0014 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12861320_14598384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:37 Heat of formation + Delta-G solvation = -69.769736 kcal Electronic energy + Delta-G solvation = -25867.221686 eV Core-core repulsion = 22275.898434 eV Total energy + Delta-G solvation = -3591.323252 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.187 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.56171 -40.83082 -39.06686 -37.94608 -37.66876 -34.03837 -33.79632 -31.21797 -29.58489 -29.07427 -28.38967 -28.28390 -26.67660 -25.22509 -24.43392 -22.87118 -22.08208 -20.85258 -20.58646 -18.88904 -18.18379 -17.70634 -17.14440 -17.03030 -16.65087 -16.51756 -16.00657 -15.69824 -15.60821 -15.27201 -14.93435 -14.63968 -14.59697 -14.37013 -14.28763 -14.09917 -13.50318 -13.41271 -13.30985 -13.25884 -13.21338 -12.94366 -12.81521 -12.71033 -12.64236 -12.43439 -12.38168 -12.12551 -12.07718 -11.90332 -11.75086 -11.65909 -11.38321 -11.21885 -10.40446 -10.37264 -9.81341 -9.14282 -5.03002 0.20144 0.42197 1.30945 1.63992 1.95492 2.10294 2.64799 2.71557 3.41222 3.51060 3.54350 3.69299 3.72049 3.76217 3.87028 3.87914 3.94413 3.96317 4.05961 4.09147 4.11934 4.20879 4.32374 4.36929 4.46596 4.48748 4.58606 4.60170 4.64060 4.71923 4.72725 4.74854 4.75826 4.79746 4.81957 4.87657 4.88513 4.90565 4.96523 5.08698 5.12848 5.21276 5.26870 5.28636 5.29839 5.34301 5.35467 5.59541 5.81638 6.36805 6.40327 6.80162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.048 4.048 3 C -0.223 4.223 4 C 0.136 3.864 5 O -0.321 6.321 6 C 0.071 3.929 7 C -0.104 4.104 8 H 0.101 0.899 9 C -0.146 4.146 10 C 0.062 3.938 11 H 0.099 0.901 12 O -0.379 6.379 13 C 0.098 3.902 14 C -0.174 4.174 15 C -0.139 4.139 16 C -0.177 4.177 17 C -0.120 4.120 18 C -0.178 4.178 19 C -0.066 4.066 20 O -0.555 6.555 21 Si 0.787 3.213 22 C -0.073 4.073 23 C -0.160 4.160 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.135 0.865 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.391 0.609 45 H -0.299 1.299 46 H -0.285 1.285 47 H 0.160 0.840 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 -1.161 -0.875 3.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.048 4.048 3 C -0.242 4.242 4 C 0.091 3.909 5 O -0.235 6.235 6 C -0.004 4.004 7 C -0.123 4.123 8 H 0.119 0.881 9 C -0.183 4.183 10 C 0.004 3.996 11 H 0.117 0.883 12 O -0.299 6.299 13 C 0.059 3.941 14 C -0.232 4.232 15 C -0.196 4.196 16 C -0.234 4.234 17 C -0.157 4.157 18 C -0.179 4.179 19 C -0.175 4.175 20 O -0.363 6.363 21 Si 0.692 3.308 22 C -0.090 4.090 23 C -0.178 4.178 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.153 0.847 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.240 0.760 45 H -0.227 1.227 46 H -0.212 1.212 47 H 0.177 0.823 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.931 -1.091 -0.055 2.219 hybrid contribution 0.028 0.910 0.307 0.961 sum -1.903 -0.181 0.253 1.929 Atomic orbital electron populations 1.20901 0.89300 1.03844 1.03383 1.20112 0.97385 0.92348 0.94949 1.21346 0.92515 1.00013 1.10332 1.19041 0.90723 0.85872 0.95307 1.86115 1.36505 1.12704 1.88156 1.22888 0.93898 0.81724 1.01856 1.22252 0.99201 0.92094 0.98709 0.88098 1.23549 1.02004 0.96169 0.96608 1.23637 0.97230 0.88615 0.90120 0.88323 1.88009 1.38819 1.44220 1.58842 1.21686 0.90224 0.88084 0.94092 1.22448 0.98024 1.01527 1.01179 1.21792 1.00925 0.99024 0.97860 1.22452 1.02120 1.00483 0.98361 1.23190 0.99654 0.93258 0.99611 1.19848 0.96526 0.91496 1.10065 1.25100 0.91605 1.12183 0.88577 1.86491 1.75480 1.57456 1.16860 0.93938 0.76739 0.77351 0.82769 1.21097 0.94754 0.96282 0.96840 1.21272 0.93881 0.98628 1.03992 0.89981 0.89925 0.91183 0.84710 0.91591 0.91042 0.91554 0.90108 0.92502 0.90466 0.92389 0.92112 0.89700 0.92413 0.92010 0.90363 0.91983 0.88951 0.89321 0.89470 0.76006 1.22723 1.21198 0.82331 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.39 10.01 71.24 0.71 1.10 16 2 C -0.05 -0.06 5.88 -19.88 -0.12 -0.18 16 3 C -0.22 -0.89 8.69 22.37 0.19 -0.70 16 4 C 0.14 0.96 6.66 22.51 0.15 1.11 16 5 O -0.32 -2.69 9.47 -92.48 -0.88 -3.56 16 6 C 0.07 0.20 4.58 71.98 0.33 0.53 16 7 C -0.10 -0.17 4.01 -10.27 -0.04 -0.21 16 8 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 9 C -0.15 -0.47 7.46 31.12 0.23 -0.24 16 10 C 0.06 0.12 2.82 31.12 0.09 0.21 16 11 H 0.10 0.02 5.55 -2.39 -0.01 0.00 16 12 O -0.38 -1.92 10.00 -148.98 -1.49 -3.41 16 13 C 0.10 0.16 1.11 -10.79 -0.01 0.15 16 14 C -0.17 -0.12 8.39 71.98 0.60 0.49 16 15 C -0.14 -0.06 8.84 71.98 0.64 0.57 16 16 C -0.18 0.11 8.38 71.98 0.60 0.72 16 17 C -0.12 0.01 7.47 31.12 0.23 0.24 16 18 C -0.18 -0.85 5.27 -19.77 -0.10 -0.96 16 19 C -0.07 -0.32 2.38 71.24 0.17 -0.15 16 20 O -0.56 -3.13 12.88 -148.98 -1.92 -5.05 16 21 Si 0.79 0.26 29.92 68.60 2.05 2.31 16 22 C -0.07 -0.01 8.66 22.26 0.19 0.19 16 23 C -0.16 0.07 9.70 22.28 0.22 0.28 16 24 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H 0.08 -0.45 8.08 -2.39 -0.02 -0.46 16 26 H 0.07 -0.26 8.08 -2.39 -0.02 -0.28 16 27 H 0.14 0.19 6.30 -2.91 -0.02 0.17 16 28 H 0.07 0.15 7.36 -2.39 -0.02 0.13 16 29 H 0.07 0.05 7.66 -2.39 -0.02 0.03 16 30 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.08 0.41 7.89 -2.39 -0.02 0.39 16 32 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.06 0.05 7.02 -2.39 -0.02 0.03 16 35 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.06 -0.07 6.25 -2.39 -0.01 -0.09 16 39 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.09 0.03 8.10 -2.38 -0.02 0.01 16 42 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.09 0.76 7.83 -2.39 -0.02 0.74 16 44 H 0.39 -1.22 8.70 -74.06 -0.64 -1.86 16 45 H -0.30 -2.26 7.11 99.48 0.71 -1.56 16 46 H -0.29 -1.40 7.11 99.48 0.71 -0.69 16 47 H 0.16 -0.97 5.14 -2.91 -0.01 -0.99 16 48 H 0.15 -0.84 8.06 -2.91 -0.02 -0.86 16 Total: 0.00 -14.53 378.37 2.18 -12.36 By element: Atomic # 1 Polarization: -6.13 SS G_CDS: 0.32 Total: -5.80 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 4.09 Total: 3.16 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -4.28 Total: -12.02 kcal Atomic # 14 Polarization: 0.26 SS G_CDS: 2.05 Total: 2.31 kcal Total: -14.53 2.18 -12.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12861320_14598384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.414 kcal (2) G-P(sol) polarization free energy of solvation -14.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds