Wall clock time and date at job start Tue Mar 9 2021 14:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99669 * 2 1 3 5 5 O 1.42905 * 109.47079 * 119.99508 * 2 1 3 6 6 C 1.42897 * 113.99742 * 60.00309 * 5 2 1 7 7 H 1.09001 * 112.85000 * 341.19522 * 6 5 2 8 8 C 1.53781 * 113.61342 * 112.50023 * 6 5 2 9 9 C 1.53781 * 87.08180 * 139.98062 * 8 6 5 10 10 H 1.08996 * 113.61739 * 89.11377 * 9 8 6 11 11 C 1.53002 * 113.69326 * 220.01112 * 9 8 6 12 12 O 1.42897 * 109.46972 * 272.53339 * 11 9 8 13 13 C 1.35950 * 117.00360 * 179.97438 * 12 11 9 14 14 C 1.38788 * 120.06563 * 269.73096 * 13 12 11 15 15 Cl 1.73604 * 120.02737 * 359.97438 * 14 13 12 16 16 C 1.38266 * 119.93824 * 179.74268 * 14 13 12 17 17 C 1.38255 * 120.06101 * 0.50059 * 16 14 13 18 18 C 1.50702 * 119.93904 * 179.74754 * 17 16 14 19 19 O 1.42898 * 109.47159 * 120.02312 * 18 17 16 20 20 Si 1.86305 * 109.46642 * 0.02562 * 18 17 16 21 21 C 1.38258 * 120.12711 * 359.77208 * 17 16 14 22 22 C 1.38264 * 120.06642 * 359.97438 * 21 17 16 23 23 Cl 1.73601 * 120.03250 * 180.02562 * 22 21 17 24 24 C 1.53782 * 87.08072 * 334.56499 * 9 8 6 25 25 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 30 30 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 31 31 H 1.08992 * 109.47303 * 299.99548 * 4 2 1 32 32 H 1.09002 * 109.47153 * 60.00035 * 4 2 1 33 33 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 34 34 H 1.08994 * 113.61801 * 254.52676 * 8 6 5 35 35 H 1.08996 * 113.61641 * 25.43516 * 8 6 5 36 36 H 1.08999 * 109.47248 * 32.53504 * 11 9 8 37 37 H 1.09001 * 109.47592 * 152.53316 * 11 9 8 38 38 H 1.07991 * 119.96659 * 180.27719 * 16 14 13 39 39 H 1.09003 * 109.47162 * 240.02654 * 18 17 16 40 40 H 0.96703 * 114.00021 * 299.99951 * 19 18 17 41 41 H 1.48497 * 110.00174 * 58.68149 * 20 18 17 42 42 H 1.48503 * 109.99635 * 179.97438 * 20 18 17 43 43 H 1.07999 * 119.96808 * 179.97438 * 21 17 16 44 44 H 1.08993 * 113.62055 * 270.88136 * 24 9 8 45 45 H 1.09001 * 113.68992 * 139.98568 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0064 -0.6736 1.1669 6 6 1.5847 -2.0354 1.2646 7 1 0.7236 -2.2582 0.6345 8 6 2.7335 -3.0477 1.1215 9 6 2.0563 -3.8556 2.2411 10 1 1.3247 -4.5772 1.8777 11 6 3.0405 -4.4610 3.2439 12 8 3.4750 -5.7383 2.7731 13 6 4.3594 -6.4154 3.5526 14 6 5.7239 -6.2420 3.3679 15 17 6.3038 -5.1602 2.1402 16 6 6.6210 -6.9280 4.1657 17 6 6.1598 -7.7939 5.1399 18 6 7.1401 -8.5444 6.0041 19 8 6.9268 -8.2011 7.3748 20 14 8.8780 -8.0874 5.5126 21 6 4.8011 -7.9729 5.3224 22 6 3.8994 -7.2857 4.5310 23 17 2.1935 -7.5107 4.7614 24 6 1.4334 -2.5310 2.7125 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6768 -1.7489 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 2.7464 -3.5604 0.1597 35 1 3.7072 -2.6455 1.4010 36 1 3.9015 -3.8013 3.3516 37 1 2.5494 -4.5778 4.2100 38 1 7.6828 -6.7899 4.0254 39 1 6.9949 -9.6165 5.8713 40 1 7.0395 -7.2600 7.5667 41 1 9.0788 -6.6233 5.6589 42 1 9.8543 -8.8205 6.3580 43 1 4.4437 -8.6503 6.0839 44 1 2.0516 -1.9875 3.4270 45 1 0.3966 -2.6251 3.0356 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12913552_14598384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:13:48 Heat of formation + Delta-G solvation = -70.160886 kcal Electronic energy + Delta-G solvation = -27962.965499 eV Core-core repulsion = 23807.563319 eV Total energy + Delta-G solvation = -4155.402180 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54609 -40.86513 -39.39866 -38.28424 -37.89057 -37.64290 -37.05841 -33.92455 -32.22001 -31.93223 -29.45940 -28.35957 -28.28528 -26.67556 -26.45769 -24.39238 -23.74526 -22.75905 -20.86951 -20.64016 -19.42109 -18.65073 -18.00820 -17.78733 -17.02031 -16.93018 -16.52242 -16.24573 -16.05980 -15.89237 -15.65817 -15.51268 -15.09718 -14.91631 -14.54582 -14.24348 -14.20426 -13.80320 -13.50087 -13.44338 -13.33218 -13.23258 -13.13174 -12.96172 -12.78848 -12.66330 -12.64991 -12.38652 -12.23906 -12.20717 -12.15910 -12.06854 -11.86190 -11.66931 -11.54069 -11.25186 -10.95163 -10.75151 -10.35949 -9.99276 -9.85759 -4.95017 -0.43156 -0.29037 0.65547 1.06142 1.26738 1.56826 1.87877 1.93844 2.36605 2.75668 3.27085 3.39297 3.44467 3.56771 3.69149 3.72863 3.78396 3.84704 3.88663 3.92987 3.99039 4.09523 4.11372 4.16736 4.25866 4.37124 4.51373 4.53828 4.55741 4.61746 4.67102 4.73019 4.77368 4.77728 4.78929 4.84587 4.91015 4.93532 4.93793 5.01542 5.12254 5.15065 5.19643 5.31392 5.32673 5.39107 6.14556 6.41786 6.43089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 C -0.139 4.139 4 C -0.173 4.173 5 O -0.381 6.381 6 C 0.061 3.939 7 H 0.101 0.899 8 C -0.143 4.143 9 C -0.100 4.100 10 H 0.107 0.893 11 C 0.081 3.919 12 O -0.325 6.325 13 C 0.110 3.890 14 C -0.051 4.051 15 Cl -0.041 7.041 16 C -0.089 4.089 17 C -0.093 4.093 18 C -0.074 4.074 19 O -0.542 6.542 20 Si 0.753 3.247 21 C -0.066 4.066 22 C -0.055 4.055 23 Cl -0.045 7.045 24 C -0.123 4.123 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.163 0.837 39 H 0.140 0.860 40 H 0.389 0.611 41 H -0.278 1.278 42 H -0.296 1.296 43 H 0.157 0.843 44 H 0.087 0.913 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 0.187 -1.652 1.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.060 3.940 3 C -0.196 4.196 4 C -0.231 4.231 5 O -0.301 6.301 6 C 0.003 3.997 7 H 0.118 0.882 8 C -0.181 4.181 9 C -0.118 4.118 10 H 0.125 0.875 11 C 0.008 3.992 12 O -0.242 6.242 13 C 0.064 3.936 14 C -0.079 4.079 15 Cl -0.012 7.012 16 C -0.107 4.107 17 C -0.094 4.094 18 C -0.183 4.183 19 O -0.350 6.350 20 Si 0.658 3.342 21 C -0.085 4.085 22 C -0.083 4.083 23 Cl -0.016 7.016 24 C -0.161 4.161 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.180 0.820 39 H 0.158 0.842 40 H 0.238 0.762 41 H -0.204 1.204 42 H -0.223 1.223 43 H 0.175 0.825 44 H 0.105 0.895 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.589 0.045 -1.489 1.602 hybrid contribution -0.643 0.709 0.782 1.235 sum -0.054 0.754 -0.708 1.035 Atomic orbital electron populations 1.22448 0.94930 1.02770 1.03246 1.21675 0.93715 0.93302 0.85357 1.21793 1.01586 0.93263 1.03007 1.22439 1.01753 1.00963 0.97928 1.88011 1.74261 1.24197 1.43645 1.23661 0.97221 0.81196 0.97594 0.88167 1.23530 0.98892 0.96514 0.99142 1.22232 0.97706 0.95672 0.96217 0.87462 1.22846 0.97172 0.81581 0.97636 1.86081 1.59872 1.32787 1.45497 1.18231 0.87639 0.95340 0.92396 1.21209 0.92250 0.98527 0.95879 1.98412 1.88083 1.62288 1.52435 1.21144 1.00382 0.95049 0.94134 1.20278 0.94402 0.97586 0.97097 1.25184 1.06777 1.04041 0.82266 1.86610 1.92042 1.32037 1.24279 0.94141 0.72446 0.78453 0.89201 1.21112 0.91486 0.98015 0.97876 1.21351 0.87043 1.01623 0.98279 1.98405 1.11064 1.95934 1.96167 1.23200 1.02204 0.93964 0.96708 0.92155 0.90417 0.91844 0.92463 0.89744 0.92263 0.92114 0.90573 0.92524 0.90991 0.90248 0.92430 0.92064 0.82009 0.84208 0.76172 1.20372 1.22317 0.82532 0.89461 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.23 8.38 71.98 0.60 0.83 16 2 C 0.10 0.09 1.11 -10.79 -0.01 0.08 16 3 C -0.14 -0.02 8.84 71.98 0.64 0.62 16 4 C -0.17 0.08 8.38 71.98 0.60 0.69 16 5 O -0.38 -1.69 10.00 -148.98 -1.49 -3.18 16 6 C 0.06 0.04 2.82 31.12 0.09 0.13 16 7 H 0.10 -0.13 5.54 -2.39 -0.01 -0.14 16 8 C -0.14 -0.16 7.47 31.12 0.23 0.07 16 9 C -0.10 0.01 4.01 -10.27 -0.04 -0.03 16 10 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 11 C 0.08 0.12 5.90 71.98 0.42 0.55 16 12 O -0.33 -1.45 8.98 -92.99 -0.83 -2.29 16 13 C 0.11 0.38 5.71 22.53 0.13 0.51 16 14 C -0.05 -0.09 6.33 22.41 0.14 0.05 16 15 Cl -0.04 -0.10 28.50 -2.72 -0.08 -0.18 16 16 C -0.09 0.18 8.45 22.28 0.19 0.37 16 17 C -0.09 0.26 5.39 -19.86 -0.11 0.15 16 18 C -0.07 0.32 2.82 71.24 0.20 0.53 16 19 O -0.54 0.79 12.77 -148.98 -1.90 -1.11 16 20 Si 0.75 -3.41 29.78 68.60 2.04 -1.36 16 21 C -0.07 0.05 9.39 22.28 0.21 0.26 16 22 C -0.06 -0.12 6.33 22.41 0.14 0.02 16 23 Cl -0.04 -0.13 28.50 -2.72 -0.08 -0.21 16 24 C -0.12 0.07 7.47 31.12 0.23 0.31 16 25 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 26 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.06 -0.13 6.24 -2.38 -0.01 -0.15 16 28 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.06 -0.05 7.02 -2.39 -0.02 -0.07 16 32 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.08 0.27 7.90 -2.39 -0.02 0.25 16 36 H 0.06 0.11 7.85 -2.39 -0.02 0.09 16 37 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.16 -0.92 4.87 -2.92 -0.01 -0.94 16 39 H 0.14 -0.95 7.96 -2.39 -0.02 -0.97 16 40 H 0.39 -2.65 8.70 -74.06 -0.64 -3.29 16 41 H -0.28 0.21 7.11 99.48 0.71 0.91 16 42 H -0.30 -0.96 7.11 99.48 0.71 -0.25 16 43 H 0.16 -0.40 8.06 -2.91 -0.02 -0.42 16 44 H 0.09 0.06 8.10 -2.39 -0.02 0.04 16 45 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 Total: 0.00 -10.71 393.36 1.73 -8.98 By element: Atomic # 1 Polarization: -6.17 SS G_CDS: 0.40 Total: -5.77 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 3.67 Total: 5.13 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: -4.23 Total: -6.58 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.04 Total: -1.36 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.16 Total: -0.39 kcal Total: -10.71 1.73 -8.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12913552_14598384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.180 kcal (2) G-P(sol) polarization free energy of solvation -10.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds