Wall clock time and date at job start Tue Mar 9 2021 14:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47181 * 2 1 4 4 C 1.52999 * 109.47011 * 239.99821 * 2 1 3 5 5 Si 1.86304 * 109.46697 * 119.99983 * 2 1 3 6 6 C 1.86292 * 109.47069 * 300.00098 * 5 2 1 7 7 C 1.86300 * 109.46935 * 179.97438 * 5 2 1 8 8 O 1.63105 * 109.46926 * 60.00234 * 5 2 1 9 9 C 1.42902 * 113.99898 * 180.02562 * 8 5 2 10 10 C 1.52997 * 109.47144 * 179.97438 * 9 8 5 11 11 O 1.42904 * 109.47143 * 64.99902 * 10 9 8 12 12 C 1.42897 * 113.99776 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46877 * 179.97438 * 12 11 10 14 14 O 1.42898 * 109.47245 * 65.00285 * 13 12 11 15 15 C 1.35954 * 117.00481 * 180.02562 * 14 13 12 16 16 C 1.38783 * 120.06477 * 89.99552 * 15 14 13 17 17 Cl 1.73600 * 120.03260 * 0.02562 * 16 15 14 18 18 C 1.38261 * 119.93597 * 180.02562 * 16 15 14 19 19 C 1.38259 * 120.06294 * 0.02562 * 18 16 15 20 20 C 1.50706 * 119.93402 * 179.97438 * 19 18 16 21 21 O 1.42903 * 109.47186 * 65.00479 * 20 19 18 22 22 Si 1.86302 * 109.46768 * 185.00158 * 20 19 18 23 23 H 1.48499 * 109.47007 * 60.00227 * 22 20 19 24 24 H 1.48496 * 109.47156 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47188 * 300.00272 * 22 20 19 26 26 C 1.38253 * 120.12592 * 0.25942 * 19 18 16 27 27 C 1.38264 * 120.06436 * 359.44579 * 26 19 18 28 28 Cl 1.73600 * 120.03240 * 180.27464 * 27 26 19 29 29 H 1.08995 * 109.47305 * 300.00450 * 1 2 3 30 30 H 1.09007 * 109.46811 * 60.00244 * 1 2 3 31 31 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47226 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47527 * 299.99930 * 3 2 1 34 34 H 1.09006 * 109.46958 * 60.00176 * 3 2 1 35 35 H 1.08997 * 109.47249 * 300.00139 * 4 2 1 36 36 H 1.09000 * 109.47384 * 60.00691 * 4 2 1 37 37 H 1.09006 * 109.46765 * 180.02562 * 4 2 1 38 38 H 1.09007 * 109.47198 * 180.02562 * 6 5 2 39 39 H 1.09002 * 109.47576 * 299.99698 * 6 5 2 40 40 H 1.08998 * 109.47478 * 60.00118 * 6 5 2 41 41 H 1.08994 * 109.47520 * 300.00331 * 7 5 2 42 42 H 1.08999 * 109.46529 * 60.00471 * 7 5 2 43 43 H 1.09000 * 109.46720 * 179.97438 * 7 5 2 44 44 H 1.09006 * 109.47287 * 59.99343 * 9 8 5 45 45 H 1.09008 * 109.46723 * 299.99980 * 9 8 5 46 46 H 1.08997 * 109.47024 * 304.99943 * 10 9 8 47 47 H 1.08999 * 109.46801 * 184.99665 * 10 9 8 48 48 H 1.09000 * 109.46927 * 60.00335 * 12 11 10 49 49 H 1.08995 * 109.47115 * 299.99872 * 12 11 10 50 50 H 1.09001 * 109.47116 * 304.99934 * 13 12 11 51 51 H 1.09000 * 109.47405 * 185.00007 * 13 12 11 52 52 H 1.08008 * 119.96783 * 180.02562 * 18 16 15 53 53 H 1.08992 * 109.47155 * 305.00075 * 20 19 18 54 54 H 0.96698 * 113.99763 * 59.99746 * 21 20 19 55 55 H 1.08003 * 119.96815 * 179.72302 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1509 -0.8783 1.5212 6 6 1.5298 -0.0001 3.0422 7 6 4.0139 -0.8790 1.5209 8 8 1.6072 -2.4160 1.5211 9 6 2.0283 -3.1815 2.6520 10 6 1.4624 -4.5991 2.5476 11 8 2.0309 -5.2565 1.4132 12 6 1.5668 -6.5948 1.2241 13 6 2.2374 -7.1971 -0.0122 14 8 3.6430 -7.3134 0.2173 15 6 4.3921 -7.8341 -0.7906 16 6 4.9394 -6.9979 -1.7536 17 17 4.6688 -5.2851 -1.6723 18 6 5.7003 -7.5304 -2.7779 19 6 5.9158 -8.8945 -2.8436 20 6 6.7453 -9.4718 -3.9616 21 8 8.0912 -9.0056 -3.8459 22 14 6.7210 -11.3317 -3.8561 23 1 5.3224 -11.8161 -3.9763 24 1 7.5378 -11.9006 -4.9581 25 1 7.2830 -11.7608 -2.5503 26 6 5.3670 -9.7304 -1.8890 27 6 4.6102 -9.2030 -0.8590 28 17 3.9274 -10.2528 0.3432 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 1.8935 -0.5136 3.9323 39 1 1.8932 1.0276 3.0423 40 1 0.4399 0.0000 3.0422 41 1 4.3769 -1.3930 0.6310 42 1 4.3775 0.1486 1.5207 43 1 4.3771 -1.3924 2.4111 44 1 1.6634 -2.7113 3.5652 45 1 3.1172 -3.2253 2.6759 46 1 0.3794 -4.5506 2.4345 47 1 1.7088 -5.1561 3.4515 48 1 0.4859 -6.5880 1.0837 49 1 1.8157 -7.1929 2.1006 50 1 2.0618 -6.5506 -0.8720 51 1 1.8185 -8.1841 -0.2082 52 1 6.1268 -6.8800 -3.5274 53 1 6.3327 -9.1568 -4.9200 54 1 8.5220 -9.2500 -3.0155 55 1 5.5332 -10.7961 -1.9453 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12913552_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:18:18 Heat of formation + Delta-G solvation = -193.439281 kcal Electronic energy + Delta-G solvation = -35063.989385 eV Core-core repulsion = 30277.041061 eV Total energy + Delta-G solvation = -4786.948324 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 424.124 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.45819 -39.60831 -38.88915 -37.89056 -37.78029 -37.33307 -36.96093 -36.83515 -32.64820 -31.99443 -31.23573 -29.68132 -29.18575 -29.07369 -27.84743 -27.39473 -26.59281 -24.41140 -23.83886 -23.43049 -22.72141 -20.42458 -19.56871 -18.64993 -18.22017 -17.93577 -17.65650 -17.05609 -16.92619 -16.43877 -16.23832 -16.00454 -15.87501 -15.73059 -15.66327 -15.32977 -15.17773 -14.89491 -14.76865 -14.74935 -14.39863 -14.21135 -13.97703 -13.76557 -13.54413 -13.49353 -13.37913 -13.20534 -13.16929 -12.97062 -12.93962 -12.93051 -12.62229 -12.56988 -12.42950 -12.34208 -12.22946 -12.17050 -12.11327 -11.99840 -11.79366 -11.77207 -11.69570 -11.49819 -11.21934 -11.05267 -10.53324 -10.50220 -10.29958 -10.05566 -9.98358 -9.85034 -0.42010 -0.29368 0.66332 1.03353 1.21033 1.44555 1.50521 1.54538 1.79474 1.90373 1.91625 2.13192 2.42491 2.49425 2.71840 3.30453 3.53887 3.65957 3.79625 3.85114 3.96873 4.10866 4.11467 4.11880 4.12148 4.16980 4.24646 4.33261 4.43385 4.45615 4.49945 4.54812 4.57298 4.60790 4.70432 4.71717 4.72639 4.75348 4.78308 4.79157 4.80318 4.82477 4.84854 4.93990 4.98302 5.07755 5.08198 5.18935 5.19192 5.32486 5.39312 5.43359 5.53274 5.58409 5.63083 6.13857 6.32971 6.66350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.381 4.381 3 C -0.140 4.140 4 C -0.134 4.134 5 Si 1.309 2.691 6 C -0.513 4.513 7 C -0.518 4.518 8 O -0.634 6.634 9 C 0.076 3.924 10 C 0.054 3.946 11 O -0.392 6.392 12 C 0.063 3.937 13 C 0.066 3.934 14 O -0.323 6.323 15 C 0.110 3.890 16 C -0.057 4.057 17 Cl -0.042 7.042 18 C -0.063 4.063 19 C -0.095 4.095 20 C -0.072 4.072 21 O -0.546 6.546 22 Si 0.966 3.034 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.248 1.248 26 C -0.102 4.102 27 C -0.050 4.050 28 Cl -0.043 7.043 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.066 0.934 50 H 0.061 0.939 51 H 0.084 0.916 52 H 0.161 0.839 53 H 0.139 0.861 54 H 0.391 0.609 55 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.369 -2.010 1.049 2.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.424 4.424 3 C -0.197 4.197 4 C -0.191 4.191 5 Si 1.439 2.561 6 C -0.615 4.615 7 C -0.619 4.619 8 O -0.594 6.594 9 C 0.001 3.999 10 C -0.022 4.022 11 O -0.312 6.312 12 C -0.013 4.013 13 C -0.007 4.007 14 O -0.240 6.240 15 C 0.064 3.936 16 C -0.084 4.084 17 Cl -0.013 7.013 18 C -0.082 4.082 19 C -0.096 4.096 20 C -0.183 4.183 21 O -0.354 6.354 22 Si 0.789 3.211 23 H -0.174 1.174 24 H -0.192 1.192 25 H -0.171 1.171 26 C -0.120 4.120 27 C -0.078 4.078 28 Cl -0.013 7.013 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.107 0.893 49 H 0.084 0.916 50 H 0.079 0.921 51 H 0.102 0.898 52 H 0.178 0.822 53 H 0.156 0.844 54 H 0.241 0.759 55 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.571 -2.645 0.546 3.125 hybrid contribution -0.006 0.672 0.676 0.953 sum -1.578 -1.974 1.222 2.807 Atomic orbital electron populations 1.21520 0.93981 1.01709 1.01958 1.25883 1.00599 1.02978 1.12892 1.21596 1.01109 0.94633 1.02363 1.21498 1.00595 0.99855 0.97145 0.76330 0.62108 0.53124 0.64552 1.27023 1.07018 1.09752 1.17703 1.27143 1.26121 1.04627 1.04027 1.85387 1.79201 1.46441 1.48339 1.22285 0.99225 0.90751 0.87632 1.22809 0.98329 0.92072 0.89021 1.88017 1.68319 1.26409 1.48464 1.22592 0.98067 0.83619 0.97012 1.22991 0.78146 1.00672 0.98938 1.86137 1.19745 1.82205 1.35886 1.18234 0.96610 0.89034 0.89732 1.21444 1.03139 0.86639 0.97220 1.98427 1.95181 1.09684 1.98016 1.21156 0.95092 0.95389 0.96556 1.20381 0.99040 0.92925 0.97267 1.25018 0.83230 1.10712 0.99332 1.86529 1.23850 1.80415 1.44560 0.85446 0.81228 0.73542 0.80892 1.17445 1.19233 1.17134 1.21174 0.96708 1.01388 0.92736 1.21172 1.02257 0.89878 0.94484 1.98400 1.83473 1.64585 1.54883 0.91801 0.93292 0.92683 0.92135 0.93020 0.91533 0.93006 0.93165 0.92773 0.90799 0.90337 0.90786 0.92116 0.90423 0.91303 0.88936 0.92091 0.91690 0.90452 0.89318 0.91592 0.92109 0.89785 0.82183 0.84359 0.75925 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.22 7.85 71.98 0.56 0.34 16 2 C -0.38 -0.60 0.53 -10.80 -0.01 -0.60 16 3 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 4 C -0.13 -0.49 7.85 71.98 0.56 0.07 16 5 Si 1.31 -0.08 8.45 68.60 0.58 0.50 16 6 C -0.51 0.78 8.50 113.37 0.96 1.74 16 7 C -0.52 -0.94 8.50 113.37 0.96 0.02 16 8 O -0.63 -2.04 8.52 -144.34 -1.23 -3.27 16 9 C 0.08 0.00 5.50 71.98 0.40 0.40 16 10 C 0.05 0.00 6.32 71.98 0.45 0.46 16 11 O -0.39 -2.06 10.27 -135.05 -1.39 -3.45 16 12 C 0.06 0.03 6.32 71.98 0.45 0.48 16 13 C 0.07 0.14 6.44 71.98 0.46 0.60 16 14 O -0.32 -2.02 8.94 -88.39 -0.79 -2.81 16 15 C 0.11 0.54 5.71 22.53 0.13 0.67 16 16 C -0.06 -0.23 6.33 22.41 0.14 -0.09 16 17 Cl -0.04 -0.26 28.50 -2.72 -0.08 -0.34 16 18 C -0.06 -0.02 9.46 22.28 0.21 0.20 16 19 C -0.10 0.17 5.35 -19.85 -0.11 0.07 16 20 C -0.07 0.33 2.80 71.24 0.20 0.53 16 21 O -0.55 1.60 12.83 -148.98 -1.91 -0.31 16 22 Si 0.97 -3.84 25.13 68.60 1.72 -2.12 16 23 H -0.25 0.77 7.11 99.48 0.71 1.47 16 24 H -0.27 0.11 7.11 99.48 0.71 0.81 16 25 H -0.25 0.96 7.05 99.48 0.70 1.66 16 26 C -0.10 0.05 8.45 22.28 0.19 0.24 16 27 C -0.05 -0.14 6.33 22.41 0.14 0.00 16 28 Cl -0.04 -0.11 28.50 -2.72 -0.08 -0.18 16 29 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 30 H 0.05 0.11 8.14 -2.38 -0.02 0.09 16 31 H 0.05 0.14 7.97 -2.39 -0.02 0.12 16 32 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 33 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.07 -0.12 7.79 -2.38 -0.02 -0.14 16 35 H 0.05 0.28 7.96 -2.39 -0.02 0.26 16 36 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.05 0.17 7.79 -2.38 -0.02 0.15 16 38 H 0.07 -0.21 7.48 -2.38 -0.02 -0.22 16 39 H 0.08 -0.17 7.79 -2.39 -0.02 -0.18 16 40 H 0.07 -0.11 7.79 -2.39 -0.02 -0.12 16 41 H 0.06 0.26 7.79 -2.39 -0.02 0.24 16 42 H 0.08 0.03 7.79 -2.39 -0.02 0.02 16 43 H 0.07 0.08 7.48 -2.39 -0.02 0.06 16 44 H 0.09 -0.50 7.21 -2.38 -0.02 -0.52 16 45 H 0.06 0.02 7.21 -2.38 -0.02 0.00 16 46 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 47 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 48 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 49 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 50 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 51 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 52 H 0.16 -0.33 8.06 -2.91 -0.02 -0.36 16 53 H 0.14 -0.99 7.96 -2.39 -0.02 -1.01 16 54 H 0.39 -3.50 8.70 -74.06 -0.64 -4.14 16 55 H 0.15 -0.51 4.86 -2.91 -0.01 -0.53 16 Total: 0.00 -13.42 473.00 4.10 -9.32 By element: Atomic # 1 Polarization: -3.99 SS G_CDS: 0.98 Total: -3.01 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 6.29 Total: 5.67 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -5.32 Total: -9.84 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: 2.30 Total: -1.62 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.16 Total: -0.52 kcal Total: -13.42 4.10 -9.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12913552_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.117 kcal (2) G-P(sol) polarization free energy of solvation -13.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds