Wall clock time and date at job start Tue Mar 9 2021 14:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47299 * 2 1 4 4 C 1.52996 * 109.47177 * 239.99778 * 2 1 3 5 5 Si 1.86301 * 109.47044 * 120.00157 * 2 1 3 6 6 C 1.86305 * 109.46724 * 299.99774 * 5 2 1 7 7 C 1.86294 * 109.47081 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47218 * 59.99674 * 5 2 1 9 9 C 1.42905 * 113.99834 * 180.02562 * 8 5 2 10 10 C 1.52998 * 109.46897 * 180.02562 * 9 8 5 11 11 C 1.52999 * 109.46935 * 179.97438 * 10 9 8 12 12 O 1.42898 * 109.47245 * 179.97438 * 11 10 9 13 13 C 1.35954 * 117.00481 * 180.02562 * 12 11 10 14 14 C 1.38783 * 120.06477 * 89.99552 * 13 12 11 15 15 Cl 1.73600 * 120.03260 * 0.02562 * 14 13 12 16 16 C 1.38261 * 119.93597 * 180.02562 * 14 13 12 17 17 C 1.38259 * 120.06294 * 0.02562 * 16 14 13 18 18 C 1.50706 * 119.93402 * 179.97438 * 17 16 14 19 19 O 1.42903 * 109.47186 * 65.00479 * 18 17 16 20 20 Si 1.86302 * 109.46768 * 185.00158 * 18 17 16 21 21 H 1.48499 * 109.47007 * 60.00227 * 20 18 17 22 22 H 1.48496 * 109.47156 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47188 * 300.00272 * 20 18 17 24 24 C 1.38253 * 120.12592 * 0.25942 * 17 16 14 25 25 C 1.38264 * 120.06436 * 359.44579 * 24 17 16 26 26 Cl 1.73600 * 120.03240 * 180.27464 * 25 24 17 27 27 H 1.09000 * 109.47366 * 300.00203 * 1 2 3 28 28 H 1.09002 * 109.46891 * 59.99896 * 1 2 3 29 29 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47471 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46721 * 299.99888 * 3 2 1 32 32 H 1.09000 * 109.47078 * 59.99621 * 3 2 1 33 33 H 1.09002 * 109.47419 * 300.00090 * 4 2 1 34 34 H 1.09004 * 109.47205 * 59.99890 * 4 2 1 35 35 H 1.09000 * 109.47779 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.46844 * 179.97438 * 6 5 2 37 37 H 1.09002 * 109.47064 * 299.99879 * 6 5 2 38 38 H 1.08997 * 109.47076 * 60.00457 * 6 5 2 39 39 H 1.09000 * 109.47186 * 299.99553 * 7 5 2 40 40 H 1.09002 * 109.47616 * 59.99564 * 7 5 2 41 41 H 1.09002 * 109.46927 * 179.97438 * 7 5 2 42 42 H 1.09001 * 109.47229 * 59.99875 * 9 8 5 43 43 H 1.08997 * 109.46829 * 299.99994 * 9 8 5 44 44 H 1.09001 * 109.47543 * 59.99748 * 10 9 8 45 45 H 1.08997 * 109.47116 * 299.99499 * 10 9 8 46 46 H 1.09001 * 109.47116 * 59.99602 * 11 10 9 47 47 H 1.09000 * 109.47405 * 299.99675 * 11 10 9 48 48 H 1.08008 * 119.96783 * 180.02562 * 16 14 13 49 49 H 1.08992 * 109.47155 * 305.00075 * 18 17 16 50 50 H 0.96698 * 113.99763 * 59.99746 * 19 18 17 51 51 H 1.08003 * 119.96815 * 179.72302 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8783 1.5211 6 6 1.5299 0.0001 3.0422 7 6 4.0139 -0.8776 1.5215 8 8 1.6073 -2.4159 1.5211 9 6 2.0285 -3.1813 2.6520 10 6 1.4636 -4.5994 2.5471 11 6 1.9151 -5.4190 3.7575 12 8 1.3871 -6.7433 3.6599 13 6 1.6959 -7.6066 4.6637 14 6 0.8730 -7.7012 5.7772 15 17 -0.5530 -6.7174 5.8898 16 6 1.1898 -8.5796 6.7967 17 6 2.3256 -9.3630 6.7079 18 6 2.6686 -10.3192 7.8212 19 8 1.6647 -11.3328 7.9047 20 14 4.3204 -11.1082 7.4752 21 1 5.3636 -10.0549 7.3884 22 1 4.6587 -12.0499 8.5724 23 1 4.2559 -11.8481 6.1893 24 6 3.1504 -9.2667 5.6026 25 6 2.8352 -8.3944 4.5772 26 17 3.8677 -8.2792 3.1863 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.8929 -0.5141 3.9322 37 1 1.8933 1.0277 3.0422 38 1 0.4400 0.0000 3.0422 39 1 4.3776 -1.3912 0.6316 40 1 4.3770 0.1502 1.5217 41 1 4.3772 -1.3911 2.4118 42 1 1.6637 -2.7112 3.5653 43 1 3.1173 -3.2252 2.6759 44 1 1.8287 -5.0693 1.6339 45 1 0.3748 -4.5559 2.5230 46 1 1.5503 -4.9492 4.6710 47 1 3.0040 -5.4625 3.7812 48 1 0.5495 -8.6539 7.6634 49 1 2.7159 -9.7760 8.7650 50 1 1.5672 -11.8572 7.0981 51 1 4.0393 -9.8766 5.5379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_12913552_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:15 Heat of formation + Delta-G solvation = -165.642814 kcal Electronic energy + Delta-G solvation = -29993.065080 eV Core-core repulsion = 25681.541912 eV Total energy + Delta-G solvation = -4311.523168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 394.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49709 -39.48632 -38.30268 -37.87746 -37.74362 -37.06711 -36.85642 -33.71324 -32.07248 -31.69963 -29.47072 -29.12095 -27.88790 -27.40649 -27.27688 -25.97206 -24.45250 -22.87732 -22.68359 -20.44728 -19.52914 -18.71371 -18.10133 -17.84010 -17.26288 -16.85824 -16.50041 -16.36311 -16.05281 -15.86223 -15.69644 -15.36233 -15.33269 -15.15636 -14.88461 -14.74156 -14.30132 -14.18029 -14.00709 -13.73354 -13.49367 -13.47141 -13.41059 -13.27481 -13.01825 -12.95487 -12.93643 -12.80736 -12.67383 -12.51992 -12.41738 -12.33683 -12.18249 -12.15141 -12.05031 -11.87510 -11.77881 -11.72860 -11.49184 -11.36651 -11.03256 -10.65950 -10.39739 -10.09926 -10.00428 -9.88808 -0.46431 -0.32191 0.65083 0.92093 1.14528 1.28561 1.33980 1.36078 1.70871 1.77574 1.87154 2.01683 2.30639 2.51962 3.17908 3.33631 3.58938 3.72632 3.79117 3.85306 3.96109 4.04362 4.06749 4.09977 4.10728 4.22866 4.29363 4.33629 4.39688 4.45327 4.50403 4.63184 4.66747 4.67348 4.68973 4.69393 4.79169 4.83886 4.87696 4.98128 4.99891 5.03287 5.08838 5.08891 5.12506 5.18742 5.31967 5.39679 5.40973 5.49077 5.52226 5.56608 6.14054 6.35229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.287 2.713 6 C -0.511 4.511 7 C -0.511 4.511 8 O -0.622 6.622 9 C 0.090 3.910 10 C -0.121 4.121 11 C 0.065 3.935 12 O -0.314 6.314 13 C 0.122 3.878 14 C -0.046 4.046 15 Cl -0.036 7.036 16 C -0.064 4.064 17 C -0.102 4.102 18 C -0.078 4.078 19 O -0.533 6.533 20 Si 0.940 3.060 21 H -0.245 1.245 22 H -0.246 1.246 23 H -0.247 1.247 24 C -0.102 4.102 25 C -0.041 4.041 26 Cl -0.037 7.037 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.151 0.849 49 H 0.126 0.874 50 H 0.379 0.621 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 0.209 2.195 3.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.582 6.582 9 C 0.014 3.986 10 C -0.158 4.158 11 C -0.009 4.009 12 O -0.230 6.230 13 C 0.076 3.924 14 C -0.074 4.074 15 Cl -0.007 7.007 16 C -0.083 4.083 17 C -0.103 4.103 18 C -0.188 4.188 19 O -0.338 6.338 20 Si 0.761 3.239 21 H -0.169 1.169 22 H -0.170 1.170 23 H -0.170 1.170 24 C -0.121 4.121 25 C -0.069 4.069 26 Cl -0.008 7.008 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.169 0.831 49 H 0.144 0.856 50 H 0.227 0.773 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.674 -0.037 2.197 3.461 hybrid contribution -0.056 0.706 -0.382 0.805 sum 2.617 0.669 1.815 3.255 Atomic orbital electron populations 1.21514 0.93778 1.02054 1.01793 1.25780 1.00723 1.02624 1.12704 1.21556 1.00761 0.94907 1.02157 1.21513 1.00586 1.00283 0.96755 0.76720 0.63030 0.53397 0.65036 1.27035 1.07062 1.09495 1.17717 1.27035 1.25057 1.04755 1.04465 1.85332 1.79320 1.46036 1.47483 1.21796 0.98080 0.91576 0.87109 1.21488 1.03394 0.92977 0.97957 1.22733 0.98240 0.80504 0.99417 1.86088 1.73552 1.21565 1.41835 1.18054 0.92114 0.93806 0.88417 1.21293 0.92296 0.98511 0.95268 1.98418 1.35954 1.68421 1.97905 1.21002 0.96543 0.92743 0.98004 1.20276 0.95093 0.98807 0.96127 1.24991 1.02906 0.90948 0.99999 1.86555 1.58078 1.47705 1.41502 0.85807 0.75384 0.81168 0.81532 1.16873 1.16972 1.17003 1.21021 1.00427 0.98300 0.92305 1.21106 0.93219 1.00789 0.91791 1.98416 1.65251 1.97294 1.39814 0.92705 0.92783 0.92116 0.92525 0.92482 0.92522 0.92123 0.92777 0.92717 0.91502 0.90687 0.90826 0.90832 0.90688 0.91504 0.92417 0.92441 0.89544 0.89523 0.92096 0.92116 0.83087 0.85618 0.77311 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.02 7.85 37.16 0.29 0.27 16 2 C -0.37 0.09 0.53 -90.62 -0.05 0.04 16 3 C -0.14 0.08 7.85 37.16 0.29 0.37 16 4 C -0.13 -0.02 7.85 37.16 0.29 0.27 16 5 Si 1.29 -1.38 8.45 -169.99 -1.44 -2.81 16 6 C -0.51 0.42 8.50 101.05 0.86 1.27 16 7 C -0.51 0.42 8.50 101.05 0.86 1.28 16 8 O -0.62 -0.16 8.56 -35.23 -0.30 -0.46 16 9 C 0.09 -0.09 5.12 37.16 0.19 0.10 16 10 C -0.12 0.04 5.95 -26.73 -0.16 -0.12 16 11 C 0.07 -0.02 6.06 37.16 0.23 0.20 16 12 O -0.31 -0.54 8.98 -19.60 -0.18 -0.72 16 13 C 0.12 0.16 5.71 -39.18 -0.22 -0.06 16 14 C -0.05 -0.03 6.33 -39.37 -0.25 -0.28 16 15 Cl -0.04 -0.04 28.50 -51.86 -1.48 -1.51 16 16 C -0.06 0.04 9.46 -39.57 -0.37 -0.33 16 17 C -0.10 0.13 5.35 -104.61 -0.56 -0.43 16 18 C -0.08 0.18 2.80 36.01 0.10 0.28 16 19 O -0.53 0.79 12.83 -35.23 -0.45 0.34 16 20 Si 0.94 -1.95 25.13 -169.99 -4.27 -6.22 16 21 H -0.25 0.38 7.11 56.52 0.40 0.79 16 22 H -0.25 0.14 7.11 56.52 0.40 0.54 16 23 H -0.25 0.46 7.05 56.52 0.40 0.85 16 24 C -0.10 0.06 8.45 -39.57 -0.33 -0.28 16 25 C -0.04 -0.03 6.33 -39.37 -0.25 -0.28 16 26 Cl -0.04 -0.04 28.50 -51.86 -1.48 -1.52 16 27 H 0.05 -0.02 7.79 -51.93 -0.40 -0.43 16 28 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 29 H 0.06 0.03 7.97 -51.93 -0.41 -0.39 16 30 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 31 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 33 H 0.06 0.03 7.97 -51.93 -0.41 -0.39 16 34 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 35 H 0.05 -0.02 7.79 -51.93 -0.40 -0.43 16 36 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 37 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 38 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 39 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 40 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 41 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 42 H 0.06 -0.14 7.21 -51.93 -0.37 -0.51 16 43 H 0.06 -0.14 7.22 -51.93 -0.37 -0.51 16 44 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 45 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 46 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 47 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 48 H 0.15 -0.26 8.06 -52.48 -0.42 -0.68 16 49 H 0.13 -0.44 7.96 -51.93 -0.41 -0.86 16 50 H 0.38 -1.71 8.70 45.56 0.40 -1.31 16 51 H 0.14 -0.25 4.86 -52.48 -0.25 -0.50 16 LS Contribution 439.07 15.07 6.62 6.62 Total: 0.00 -4.46 439.07 -10.11 -14.57 By element: Atomic # 1 Polarization: -2.53 SS G_CDS: -8.04 Total: -10.58 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 0.91 Total: 2.30 kcal Atomic # 8 Polarization: 0.09 SS G_CDS: -0.93 Total: -0.84 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: -5.71 Total: -9.04 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -2.96 Total: -3.03 kcal Total LS contribution 6.62 Total: 6.62 kcal Total: -4.46 -10.11 -14.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12913552_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.074 kcal (2) G-P(sol) polarization free energy of solvation -4.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds