Wall clock time and date at job start Tue Mar 9 2021 14:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47299 * 2 1 4 4 C 1.52996 * 109.47177 * 239.99778 * 2 1 3 5 5 Si 1.86301 * 109.47044 * 120.00157 * 2 1 3 6 6 C 1.86305 * 109.46724 * 299.99774 * 5 2 1 7 7 C 1.86294 * 109.47081 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47218 * 59.99674 * 5 2 1 9 9 C 1.42905 * 113.99834 * 180.02562 * 8 5 2 10 10 C 1.52998 * 109.46897 * 180.02562 * 9 8 5 11 11 C 1.52999 * 109.46935 * 179.97438 * 10 9 8 12 12 O 1.42898 * 109.47245 * 179.97438 * 11 10 9 13 13 C 1.35954 * 117.00481 * 180.02562 * 12 11 10 14 14 C 1.38783 * 120.06477 * 89.99552 * 13 12 11 15 15 Cl 1.73600 * 120.03260 * 0.02562 * 14 13 12 16 16 C 1.38261 * 119.93597 * 180.02562 * 14 13 12 17 17 C 1.38259 * 120.06294 * 0.02562 * 16 14 13 18 18 C 1.50706 * 119.93402 * 179.97438 * 17 16 14 19 19 O 1.42903 * 109.47186 * 65.00479 * 18 17 16 20 20 Si 1.86302 * 109.46768 * 185.00158 * 18 17 16 21 21 H 1.48499 * 109.47007 * 60.00227 * 20 18 17 22 22 H 1.48496 * 109.47156 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47188 * 300.00272 * 20 18 17 24 24 C 1.38253 * 120.12592 * 0.25942 * 17 16 14 25 25 C 1.38264 * 120.06436 * 359.44579 * 24 17 16 26 26 Cl 1.73600 * 120.03240 * 180.27464 * 25 24 17 27 27 H 1.09000 * 109.47366 * 300.00203 * 1 2 3 28 28 H 1.09002 * 109.46891 * 59.99896 * 1 2 3 29 29 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47471 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46721 * 299.99888 * 3 2 1 32 32 H 1.09000 * 109.47078 * 59.99621 * 3 2 1 33 33 H 1.09002 * 109.47419 * 300.00090 * 4 2 1 34 34 H 1.09004 * 109.47205 * 59.99890 * 4 2 1 35 35 H 1.09000 * 109.47779 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.46844 * 179.97438 * 6 5 2 37 37 H 1.09002 * 109.47064 * 299.99879 * 6 5 2 38 38 H 1.08997 * 109.47076 * 60.00457 * 6 5 2 39 39 H 1.09000 * 109.47186 * 299.99553 * 7 5 2 40 40 H 1.09002 * 109.47616 * 59.99564 * 7 5 2 41 41 H 1.09002 * 109.46927 * 179.97438 * 7 5 2 42 42 H 1.09001 * 109.47229 * 59.99875 * 9 8 5 43 43 H 1.08997 * 109.46829 * 299.99994 * 9 8 5 44 44 H 1.09001 * 109.47543 * 59.99748 * 10 9 8 45 45 H 1.08997 * 109.47116 * 299.99499 * 10 9 8 46 46 H 1.09001 * 109.47116 * 59.99602 * 11 10 9 47 47 H 1.09000 * 109.47405 * 299.99675 * 11 10 9 48 48 H 1.08008 * 119.96783 * 180.02562 * 16 14 13 49 49 H 1.08992 * 109.47155 * 305.00075 * 18 17 16 50 50 H 0.96698 * 113.99763 * 59.99746 * 19 18 17 51 51 H 1.08003 * 119.96815 * 179.72302 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8783 1.5211 6 6 1.5299 0.0001 3.0422 7 6 4.0139 -0.8776 1.5215 8 8 1.6073 -2.4159 1.5211 9 6 2.0285 -3.1813 2.6520 10 6 1.4636 -4.5994 2.5471 11 6 1.9151 -5.4190 3.7575 12 8 1.3871 -6.7433 3.6599 13 6 1.6959 -7.6066 4.6637 14 6 0.8730 -7.7012 5.7772 15 17 -0.5530 -6.7174 5.8898 16 6 1.1898 -8.5796 6.7967 17 6 2.3256 -9.3630 6.7079 18 6 2.6686 -10.3192 7.8212 19 8 1.6647 -11.3328 7.9047 20 14 4.3204 -11.1082 7.4752 21 1 5.3636 -10.0549 7.3884 22 1 4.6587 -12.0499 8.5724 23 1 4.2559 -11.8481 6.1893 24 6 3.1504 -9.2667 5.6026 25 6 2.8352 -8.3944 4.5772 26 17 3.8677 -8.2792 3.1863 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.8929 -0.5141 3.9322 37 1 1.8933 1.0277 3.0422 38 1 0.4400 0.0000 3.0422 39 1 4.3776 -1.3912 0.6316 40 1 4.3770 0.1502 1.5217 41 1 4.3772 -1.3911 2.4118 42 1 1.6637 -2.7112 3.5653 43 1 3.1173 -3.2252 2.6759 44 1 1.8287 -5.0693 1.6339 45 1 0.3748 -4.5559 2.5230 46 1 1.5503 -4.9492 4.6710 47 1 3.0040 -5.4625 3.7812 48 1 0.5495 -8.6539 7.6634 49 1 2.7159 -9.7760 8.7650 50 1 1.5672 -11.8572 7.0981 51 1 4.0393 -9.8766 5.5379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12913552_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:14 Heat of formation + Delta-G solvation = -155.343307 kcal Electronic energy + Delta-G solvation = -29992.618459 eV Core-core repulsion = 25681.541912 eV Total energy + Delta-G solvation = -4311.076548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 394.109 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.47740 -39.44467 -38.23298 -37.90455 -37.72076 -37.00740 -36.83279 -33.67388 -32.04199 -31.65347 -29.38687 -29.06647 -27.84517 -27.38409 -27.19065 -25.88928 -24.42559 -22.81719 -22.63283 -20.42550 -19.50766 -18.62776 -18.06466 -17.78027 -17.18978 -16.78217 -16.44290 -16.25585 -16.00614 -15.81203 -15.63595 -15.30858 -15.27683 -15.09123 -14.85223 -14.73590 -14.27674 -14.09283 -13.94541 -13.67512 -13.51561 -13.38669 -13.35708 -13.18290 -12.96204 -12.96047 -12.89801 -12.78476 -12.61326 -12.45875 -12.39406 -12.24866 -12.17198 -12.13565 -12.01790 -11.77973 -11.73369 -11.70593 -11.42047 -11.30897 -11.02236 -10.50491 -10.31669 -10.06124 -9.99647 -9.86887 -0.43625 -0.29923 0.64102 1.02408 1.19912 1.43601 1.45034 1.50629 1.78104 1.92120 1.92158 2.12179 2.34609 2.56673 3.30121 3.54163 3.64411 3.77948 3.84172 3.91833 4.01028 4.11209 4.12054 4.12259 4.15325 4.34467 4.37648 4.44912 4.46725 4.55031 4.58106 4.71936 4.73877 4.74799 4.77717 4.78881 4.82348 4.82414 4.93636 4.99714 5.04943 5.07335 5.08876 5.09162 5.19549 5.21880 5.34383 5.40480 5.44415 5.54303 5.60090 5.63973 6.14467 6.66719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.384 4.384 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.314 2.686 6 C -0.517 4.517 7 C -0.517 4.517 8 O -0.639 6.639 9 C 0.081 3.919 10 C -0.117 4.117 11 C 0.064 3.936 12 O -0.329 6.329 13 C 0.111 3.889 14 C -0.054 4.054 15 Cl -0.043 7.043 16 C -0.061 4.061 17 C -0.094 4.094 18 C -0.071 4.071 19 O -0.546 6.546 20 Si 0.963 3.037 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.249 1.249 24 C -0.101 4.101 25 C -0.051 4.051 26 Cl -0.044 7.044 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.163 0.837 49 H 0.141 0.859 50 H 0.391 0.609 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.719 0.191 3.261 4.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.426 4.426 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.444 2.556 6 C -0.619 4.619 7 C -0.619 4.619 8 O -0.599 6.599 9 C 0.006 3.994 10 C -0.154 4.154 11 C -0.010 4.010 12 O -0.246 6.246 13 C 0.065 3.935 14 C -0.082 4.082 15 Cl -0.014 7.014 16 C -0.079 4.079 17 C -0.095 4.095 18 C -0.182 4.182 19 O -0.353 6.353 20 Si 0.787 3.213 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.173 1.173 24 C -0.120 4.120 25 C -0.079 4.079 26 Cl -0.015 7.015 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.181 0.819 49 H 0.158 0.842 50 H 0.241 0.759 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.151 -0.052 3.241 4.521 hybrid contribution -0.207 0.670 -0.714 1.001 sum 2.944 0.618 2.527 3.929 Atomic orbital electron populations 1.21541 0.94324 1.01705 1.01848 1.25931 1.00365 1.03108 1.13202 1.21599 1.01302 0.94617 1.02226 1.21541 1.01029 0.99966 0.96884 0.76235 0.62626 0.52635 0.64123 1.27085 1.06853 1.09883 1.18066 1.27085 1.25137 1.05075 1.04594 1.85321 1.79730 1.46723 1.48130 1.21976 0.99053 0.91029 0.87344 1.21442 1.02783 0.93586 0.97629 1.22810 0.98660 0.79869 0.99627 1.86059 1.73945 1.22304 1.42307 1.18187 0.92562 0.94109 0.88636 1.21372 0.92173 0.99022 0.95635 1.98411 1.36350 1.68722 1.97923 1.21160 0.96716 0.92144 0.97909 1.20382 0.94558 0.98532 0.96078 1.24987 1.02327 0.90604 1.00235 1.86531 1.58184 1.47976 1.42636 0.85478 0.75238 0.80217 0.80395 1.17459 1.19279 1.17287 1.21181 1.00815 0.97945 0.92046 1.21190 0.93278 1.01388 0.92017 1.98409 1.65400 1.97366 1.40312 0.92050 0.93353 0.92659 0.91758 0.93162 0.91758 0.92664 0.93346 0.92058 0.90888 0.90302 0.91215 0.91217 0.90303 0.90889 0.90942 0.90963 0.90478 0.90464 0.91363 0.91387 0.81928 0.84179 0.75911 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.15 7.85 71.98 0.56 0.41 16 2 C -0.38 0.02 0.53 -10.80 -0.01 0.02 16 3 C -0.14 0.16 7.85 71.98 0.56 0.72 16 4 C -0.14 -0.15 7.85 71.98 0.56 0.41 16 5 Si 1.31 -3.02 8.45 68.60 0.58 -2.44 16 6 C -0.52 1.15 8.50 113.37 0.96 2.11 16 7 C -0.52 1.15 8.50 113.37 0.96 2.11 16 8 O -0.64 -0.48 8.56 -148.98 -1.28 -1.75 16 9 C 0.08 -0.18 5.12 71.98 0.37 0.19 16 10 C -0.12 0.00 5.95 30.59 0.18 0.19 16 11 C 0.06 -0.02 6.06 71.98 0.44 0.42 16 12 O -0.33 -1.36 8.98 -93.03 -0.84 -2.20 16 13 C 0.11 0.33 5.71 22.53 0.13 0.46 16 14 C -0.05 -0.08 6.33 22.41 0.14 0.06 16 15 Cl -0.04 -0.10 28.50 -2.72 -0.08 -0.17 16 16 C -0.06 0.12 9.46 22.28 0.21 0.33 16 17 C -0.09 0.32 5.35 -19.85 -0.11 0.21 16 18 C -0.07 0.41 2.80 71.24 0.20 0.61 16 19 O -0.55 2.22 12.83 -148.98 -1.91 0.31 16 20 Si 0.96 -4.49 25.13 68.60 1.72 -2.77 16 21 H -0.25 0.93 7.11 99.48 0.71 1.64 16 22 H -0.27 0.26 7.11 99.48 0.71 0.96 16 23 H -0.25 1.07 7.05 99.48 0.70 1.77 16 24 C -0.10 0.16 8.45 22.28 0.19 0.35 16 25 C -0.05 -0.09 6.33 22.41 0.14 0.06 16 26 Cl -0.04 -0.11 28.50 -2.72 -0.08 -0.18 16 27 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 28 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.05 0.11 7.97 -2.39 -0.02 0.09 16 30 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 31 H 0.05 0.01 8.14 -2.38 -0.02 -0.01 16 32 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 33 H 0.05 0.11 7.97 -2.39 -0.02 0.09 16 34 H 0.05 0.09 8.14 -2.38 -0.02 0.07 16 35 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 36 H 0.07 -0.25 7.48 -2.39 -0.02 -0.27 16 37 H 0.08 -0.23 7.79 -2.39 -0.02 -0.25 16 38 H 0.07 -0.09 7.79 -2.39 -0.02 -0.11 16 39 H 0.07 -0.09 7.79 -2.39 -0.02 -0.11 16 40 H 0.08 -0.23 7.79 -2.39 -0.02 -0.25 16 41 H 0.07 -0.25 7.48 -2.39 -0.02 -0.27 16 42 H 0.07 -0.39 7.21 -2.39 -0.02 -0.40 16 43 H 0.07 -0.39 7.22 -2.39 -0.02 -0.40 16 44 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.08 0.12 8.14 -2.39 -0.02 0.11 16 46 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 47 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 48 H 0.16 -0.73 8.06 -2.91 -0.02 -0.75 16 49 H 0.14 -1.21 7.96 -2.39 -0.02 -1.23 16 50 H 0.39 -3.90 8.70 -74.06 -0.64 -4.54 16 51 H 0.15 -0.62 4.86 -2.91 -0.01 -0.63 16 Total: 0.00 -10.30 439.07 4.65 -5.64 By element: Atomic # 1 Polarization: -6.11 SS G_CDS: 1.02 Total: -5.09 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 5.51 Total: 8.66 kcal Atomic # 8 Polarization: 0.39 SS G_CDS: -4.02 Total: -3.64 kcal Atomic # 14 Polarization: -7.52 SS G_CDS: 2.30 Total: -5.21 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.16 Total: -0.36 kcal Total: -10.30 4.65 -5.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12913552_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.701 kcal (2) G-P(sol) polarization free energy of solvation -10.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds