Wall clock time and date at job start Tue Mar 9 2021 14:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 109.47118 * 2 1 4 4 C 1.86303 * 109.47220 * 240.00426 * 2 1 3 5 5 C 1.86794 * 109.47380 * 120.00266 * 2 1 3 6 6 C 1.38229 * 120.00392 * 89.99634 * 5 2 1 7 7 C 1.38234 * 120.00615 * 180.02562 * 6 5 2 8 8 C 1.38239 * 119.99681 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00049 * 179.97438 * 8 7 6 10 10 O 1.42905 * 109.46972 * 90.00114 * 9 8 7 11 11 C 1.35950 * 116.99802 * 180.02562 * 10 9 8 12 12 C 1.38787 * 120.06263 * 269.72179 * 11 10 9 13 13 Cl 1.73602 * 120.03283 * 0.02562 * 12 11 10 14 14 C 1.38259 * 119.93644 * 179.74283 * 12 11 10 15 15 C 1.38262 * 120.06080 * 0.51241 * 14 12 11 16 16 C 1.50703 * 119.93312 * 179.73964 * 15 14 12 17 17 O 1.42891 * 109.47598 * 245.02126 * 16 15 14 18 18 Si 1.86295 * 109.47365 * 5.02617 * 16 15 14 19 19 H 1.48506 * 109.47191 * 299.99626 * 18 16 15 20 20 H 1.48497 * 109.47288 * 59.99639 * 18 16 15 21 21 H 1.48506 * 109.47277 * 179.97438 * 18 16 15 22 22 C 1.38248 * 120.13175 * 359.76679 * 15 14 12 23 23 C 1.38275 * 120.05806 * 359.97438 * 22 15 14 24 24 Cl 1.73604 * 120.02782 * 180.02562 * 23 22 15 25 25 C 1.38236 * 119.99618 * 0.24824 * 8 7 6 26 26 C 1.38231 * 120.00348 * 359.49741 * 25 8 7 27 27 H 1.08993 * 109.47055 * 299.99634 * 1 2 3 28 28 H 1.09003 * 109.47023 * 60.00078 * 1 2 3 29 29 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47404 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47567 * 300.00144 * 3 2 1 32 32 H 1.09001 * 109.47166 * 60.00245 * 3 2 1 33 33 H 1.09005 * 109.46656 * 299.99464 * 4 2 1 34 34 H 1.08997 * 109.47190 * 59.99193 * 4 2 1 35 35 H 1.08993 * 109.47404 * 180.02562 * 4 2 1 36 36 H 1.08006 * 120.00063 * 0.02562 * 6 5 2 37 37 H 1.07993 * 120.00649 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47247 * 330.00049 * 9 8 7 39 39 H 1.09001 * 109.47358 * 209.99475 * 9 8 7 40 40 H 1.08000 * 119.97328 * 180.23436 * 14 12 11 41 41 H 1.09005 * 109.46683 * 125.02623 * 16 15 14 42 42 H 0.96701 * 114.00695 * 180.02562 * 17 16 15 43 43 H 1.07999 * 119.97558 * 179.97438 * 22 15 14 44 44 H 1.08004 * 119.99728 * 179.72715 * 25 8 7 45 45 H 1.08001 * 119.99970 * 180.22692 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7161 -2.2431 1.4909 7 6 3.1764 -2.8950 2.6197 8 6 3.4059 -2.1842 3.7829 9 6 3.9072 -2.8948 5.0137 10 8 5.3363 -2.8948 5.0148 11 6 5.9526 -3.5011 6.0640 12 6 6.2725 -2.7700 7.1995 13 17 5.8855 -1.0797 7.2822 14 6 6.8945 -3.3905 8.2671 15 6 7.2073 -4.7356 8.2001 16 6 7.8905 -5.4076 9.3631 17 8 9.1949 -5.8356 8.9668 18 14 8.0349 -4.2045 10.7782 19 1 8.8324 -3.0279 10.3482 20 1 6.6792 -3.7598 11.1901 21 1 8.7076 -4.8670 11.9245 22 6 6.8950 -5.4651 7.0680 23 6 6.2682 -4.8511 5.9994 24 17 5.8759 -5.7681 4.5785 25 6 3.1701 -0.8226 3.8187 26 6 2.7148 -0.1699 2.6885 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2702 0.8900 33 1 2.1208 -1.9058 -1.5212 34 1 2.1206 -0.3643 -2.4111 35 1 3.5740 -0.8785 -1.5210 36 1 2.5364 -2.7986 0.5822 37 1 3.3560 -3.9595 2.5931 38 1 3.5439 -3.9225 5.0132 39 1 3.5433 -2.3811 5.9035 40 1 7.1402 -2.8229 9.1525 41 1 7.3051 -6.2712 9.6787 42 1 9.6936 -6.2780 9.6674 43 1 7.1409 -6.5156 7.0182 44 1 3.3452 -0.2680 4.7288 45 1 2.5342 0.8945 2.7155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12913552_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:32 Heat of formation + Delta-G solvation = -63.565015 kcal Electronic energy + Delta-G solvation = -27360.353870 eV Core-core repulsion = 23325.647615 eV Total energy + Delta-G solvation = -4034.706255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 384.063 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.53435 -40.18286 -38.99175 -37.94985 -37.76492 -37.09582 -33.33340 -32.08303 -31.88217 -31.73566 -29.44334 -28.29971 -28.27243 -27.54870 -26.18791 -24.47183 -23.47049 -22.74208 -22.13793 -19.50698 -18.60656 -18.08860 -17.91347 -17.58017 -16.58957 -16.45415 -16.23966 -15.96306 -15.53309 -15.40000 -14.83943 -14.78037 -14.42292 -14.38596 -14.30384 -14.06327 -14.00522 -13.74608 -13.72751 -13.55659 -13.43739 -13.21293 -13.13647 -13.11749 -12.97156 -12.77112 -12.64756 -12.29762 -12.20858 -12.18249 -12.05218 -11.96154 -11.84767 -11.15664 -10.93915 -10.77869 -10.76272 -10.41139 -10.03804 -9.98351 -9.80429 -9.59104 -0.51677 -0.33624 0.22479 0.52331 0.59294 0.98131 1.16011 1.42644 1.48018 1.83124 1.87317 1.89116 2.02145 2.09405 2.39949 2.66520 3.00169 3.17759 3.57022 3.67316 3.72072 3.79884 3.85330 3.90136 4.05549 4.11912 4.22967 4.27135 4.44596 4.50830 4.52827 4.66228 4.72208 4.84411 4.84657 4.88409 4.88943 4.89327 4.90582 4.92049 5.00141 5.13791 5.15907 5.39820 5.56742 5.58809 5.61015 5.67686 5.70247 6.06308 6.12711 6.79399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.126 2.874 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.373 4.373 6 C -0.103 4.103 7 C -0.119 4.119 8 C -0.098 4.098 9 C 0.109 3.891 10 O -0.323 6.323 11 C 0.107 3.893 12 C -0.050 4.050 13 Cl -0.043 7.043 14 C -0.104 4.104 15 C -0.058 4.058 16 C -0.075 4.075 17 O -0.559 6.559 18 Si 0.958 3.042 19 H -0.269 1.269 20 H -0.252 1.252 21 H -0.245 1.245 22 C -0.061 4.061 23 C -0.053 4.053 24 Cl -0.041 7.041 25 C -0.119 4.119 26 C -0.103 4.103 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.124 0.876 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.150 0.850 41 H 0.114 0.886 42 H 0.404 0.596 43 H 0.166 0.834 44 H 0.123 0.877 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 -2.142 2.590 3.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.313 2.687 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.412 4.412 6 C -0.121 4.121 7 C -0.137 4.137 8 C -0.098 4.098 9 C 0.036 3.964 10 O -0.240 6.240 11 C 0.061 3.939 12 C -0.078 4.078 13 Cl -0.014 7.014 14 C -0.122 4.122 15 C -0.059 4.059 16 C -0.185 4.185 17 O -0.369 6.369 18 Si 0.781 3.219 19 H -0.194 1.194 20 H -0.176 1.176 21 H -0.168 1.168 22 C -0.080 4.080 23 C -0.081 4.081 24 Cl -0.012 7.012 25 C -0.138 4.138 26 C -0.121 4.121 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.142 0.858 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.132 0.868 42 H 0.255 0.745 43 H 0.184 0.816 44 H 0.141 0.859 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.618 -1.181 2.522 3.221 hybrid contribution 0.177 -0.497 0.359 0.638 sum -1.441 -1.678 2.881 3.632 Atomic orbital electron populations 1.26254 1.21295 1.04526 1.04626 0.77184 0.65362 0.64557 0.61548 1.26284 1.06318 1.19472 1.04894 1.26279 1.06321 1.08523 1.15823 1.28073 1.02394 0.99561 1.11164 1.21377 0.97395 0.95228 0.98080 1.21329 0.99124 1.00304 0.92940 1.19546 1.01092 0.94470 0.94710 1.21671 0.77771 1.00336 0.96601 1.86184 1.20580 1.76397 1.40877 1.18213 0.98507 0.89344 0.87845 1.21135 1.04397 0.87285 0.94969 1.98398 1.92699 1.12075 1.98243 1.21129 0.98282 0.94660 0.98147 1.19432 0.98127 0.92152 0.96159 1.24653 0.86990 1.06270 1.00606 1.86458 1.26346 1.80610 1.43492 0.85571 0.81303 0.78520 0.76483 1.19377 1.17621 1.16798 1.21170 0.94700 1.02192 0.89916 1.21347 1.04237 0.90950 0.91567 1.98401 1.92546 1.72433 1.37823 1.21325 0.99187 0.93713 0.99531 1.21374 0.97444 1.00681 0.92601 0.91350 0.90584 0.91330 0.91484 0.90565 0.90916 0.90889 0.90563 0.91476 0.84278 0.85807 0.91133 0.91256 0.83311 0.86806 0.74504 0.81635 0.85889 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.37 8.65 113.37 0.98 2.35 16 2 Si 1.13 -5.10 12.32 68.60 0.85 -4.25 16 3 C -0.46 1.39 8.53 113.37 0.97 2.36 16 4 C -0.46 1.42 8.53 113.37 0.97 2.38 16 5 C -0.37 -0.41 4.59 22.27 0.10 -0.30 16 6 C -0.10 -0.26 9.29 22.27 0.21 -0.05 16 7 C -0.12 -0.58 9.70 22.27 0.22 -0.37 16 8 C -0.10 -0.57 5.51 -19.86 -0.11 -0.68 16 9 C 0.11 0.53 6.19 71.24 0.44 0.97 16 10 O -0.32 -2.62 8.96 -92.99 -0.83 -3.45 16 11 C 0.11 0.70 5.71 22.53 0.13 0.83 16 12 C -0.05 -0.27 6.33 22.41 0.14 -0.13 16 13 Cl -0.04 -0.23 28.50 -2.72 -0.08 -0.31 16 14 C -0.10 -0.27 8.45 22.28 0.19 -0.08 16 15 C -0.06 -0.03 5.38 -19.86 -0.11 -0.14 16 16 C -0.07 0.35 2.79 71.24 0.20 0.55 16 17 O -0.56 2.02 12.81 -148.98 -1.91 0.11 16 18 Si 0.96 -3.55 25.13 68.60 1.72 -1.83 16 19 H -0.27 -0.15 7.04 99.48 0.70 0.55 16 20 H -0.25 0.63 7.11 99.48 0.71 1.33 16 21 H -0.24 1.07 7.11 99.48 0.71 1.78 16 22 C -0.06 -0.07 9.46 22.28 0.21 0.14 16 23 C -0.05 -0.24 6.33 22.41 0.14 -0.10 16 24 Cl -0.04 -0.18 28.50 -2.72 -0.08 -0.26 16 25 C -0.12 -0.60 9.70 22.27 0.22 -0.38 16 26 C -0.10 -0.27 9.29 22.27 0.21 -0.06 16 27 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 28 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 30 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 31 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 32 H 0.07 -0.25 7.69 -2.39 -0.02 -0.27 16 33 H 0.07 -0.26 7.69 -2.38 -0.02 -0.28 16 34 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 35 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 36 H 0.14 -0.26 7.43 -2.91 -0.02 -0.28 16 37 H 0.12 0.36 8.06 -2.91 -0.02 0.34 16 38 H 0.07 0.23 8.09 -2.39 -0.02 0.21 16 39 H 0.07 0.24 8.08 -2.39 -0.02 0.22 16 40 H 0.15 0.04 4.85 -2.91 -0.01 0.02 16 41 H 0.11 -1.16 7.96 -2.38 -0.02 -1.18 16 42 H 0.40 -5.11 8.74 -74.06 -0.65 -5.75 16 43 H 0.17 -0.42 8.06 -2.91 -0.02 -0.44 16 44 H 0.12 0.39 8.06 -2.91 -0.02 0.37 16 45 H 0.14 -0.24 7.43 -2.91 -0.02 -0.26 16 Total: 0.00 -13.78 409.81 5.88 -7.90 By element: Atomic # 1 Polarization: -6.31 SS G_CDS: 1.11 Total: -5.20 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 5.10 Total: 7.28 kcal Atomic # 8 Polarization: -0.60 SS G_CDS: -2.74 Total: -3.34 kcal Atomic # 14 Polarization: -8.65 SS G_CDS: 2.57 Total: -6.08 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.16 Total: -0.57 kcal Total: -13.78 5.88 -7.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12913552_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.666 kcal (2) G-P(sol) polarization free energy of solvation -13.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds