Wall clock time and date at job start Tue Mar 9 2021 14:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47655 * 2 1 4 4 C 1.52995 * 109.46994 * 239.99552 * 2 1 3 5 5 Si 1.86299 * 109.46921 * 119.99936 * 2 1 3 6 6 C 1.86297 * 109.47314 * 299.99766 * 5 2 1 7 7 C 1.86303 * 109.47163 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.46989 * 59.99970 * 5 2 1 9 9 C 1.42899 * 113.99972 * 180.02562 * 8 5 2 10 10 C 1.53000 * 109.47405 * 179.97438 * 9 8 5 11 11 O 1.42903 * 109.46726 * 64.99720 * 10 9 8 12 12 C 1.35958 * 116.99807 * 180.02562 * 11 10 9 13 13 C 1.38662 * 120.04669 * 0.02562 * 12 11 10 14 14 C 1.38219 * 120.01125 * 180.02562 * 13 12 11 15 15 C 1.38215 * 120.11317 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.94941 * 179.97438 * 15 14 13 17 17 O 1.42889 * 109.47239 * 254.99923 * 16 15 14 18 18 Si 1.86302 * 109.47045 * 134.99740 * 16 15 14 19 19 H 1.48503 * 109.46887 * 59.99861 * 18 16 15 20 20 H 1.48498 * 109.47352 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47201 * 300.00116 * 18 16 15 22 22 C 1.38495 * 120.09704 * 359.97438 * 15 14 13 23 23 F 1.35099 * 120.00333 * 180.02562 * 22 15 14 24 24 C 1.38499 * 119.98555 * 359.72974 * 22 15 14 25 25 F 1.35101 * 120.05269 * 180.27561 * 24 22 15 26 26 H 1.08999 * 109.47189 * 300.00592 * 1 2 3 27 27 H 1.08998 * 109.46838 * 59.99525 * 1 2 3 28 28 H 1.08991 * 109.47403 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47445 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46663 * 300.00314 * 3 2 1 31 31 H 1.09002 * 109.47015 * 59.99900 * 3 2 1 32 32 H 1.08999 * 109.47775 * 300.00469 * 4 2 1 33 33 H 1.09008 * 109.47049 * 60.00557 * 4 2 1 34 34 H 1.09002 * 109.47582 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47381 * 179.97438 * 6 5 2 36 36 H 1.08999 * 109.47492 * 299.99982 * 6 5 2 37 37 H 1.09004 * 109.46818 * 60.00009 * 6 5 2 38 38 H 1.08998 * 109.46674 * 300.00064 * 7 5 2 39 39 H 1.08991 * 109.47013 * 60.00204 * 7 5 2 40 40 H 1.08998 * 109.47060 * 179.97438 * 7 5 2 41 41 H 1.09002 * 109.47445 * 59.99903 * 9 8 5 42 42 H 1.09002 * 109.47167 * 299.99822 * 9 8 5 43 43 H 1.09002 * 109.47398 * 184.99964 * 10 9 8 44 44 H 1.09001 * 109.47194 * 305.00145 * 10 9 8 45 45 H 1.07994 * 119.99591 * 0.02562 * 13 12 11 46 46 H 1.07992 * 119.94355 * 180.02562 * 14 13 12 47 47 H 1.09001 * 109.47310 * 14.99952 * 16 15 14 48 48 H 0.96704 * 114.00499 * 300.00170 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2491 5 14 2.1509 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6072 -2.4160 1.5211 9 6 2.0283 -3.1814 2.6520 10 6 1.4625 -4.5991 2.5477 11 8 2.0309 -5.2564 1.4133 12 6 1.6304 -6.5338 1.1754 13 6 0.7096 -7.1407 2.0159 14 6 0.3035 -8.4394 1.7737 15 6 0.8132 -9.1354 0.6938 16 6 0.3683 -10.5515 0.4335 17 8 1.4072 -11.4551 0.8153 18 14 -0.0029 -10.7623 -1.3800 19 1 1.2197 -10.4740 -2.1722 20 1 -0.4408 -12.1579 -1.6367 21 1 -1.0827 -9.8233 -1.7767 22 6 1.7323 -8.5333 -0.1493 23 9 2.2290 -9.2152 -1.2045 24 6 2.1375 -7.2300 0.0861 25 9 3.0298 -6.6395 -0.7387 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7218 -1.2490 35 1 1.8929 -0.5141 3.9323 36 1 1.8934 1.0277 3.0423 37 1 0.4400 0.0000 3.0422 38 1 4.3769 -1.3930 0.6309 39 1 4.3776 0.1485 1.5206 40 1 4.3772 -1.3924 2.4111 41 1 1.6635 -2.7112 3.5652 42 1 3.1172 -3.2253 2.6759 43 1 1.7088 -5.1561 3.4517 44 1 0.3794 -4.5506 2.4346 45 1 0.3098 -6.5985 2.8600 46 1 -0.4140 -8.9109 2.4288 47 1 -0.5291 -10.7631 1.0149 48 1 2.2376 -11.3244 0.3371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13025868_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:59 Heat of formation + Delta-G solvation = -225.012427 kcal Electronic energy + Delta-G solvation = -29411.466905 eV Core-core repulsion = 25033.598530 eV Total energy + Delta-G solvation = -4377.868375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.69267 -49.58160 -41.31009 -39.37637 -37.99904 -37.16326 -36.85975 -32.36309 -31.58075 -30.70646 -29.43934 -29.13465 -27.88886 -27.41443 -26.70235 -24.90778 -23.67837 -22.61779 -20.45483 -19.94648 -19.07541 -18.50524 -18.28650 -17.84263 -17.71016 -17.34551 -16.69683 -16.34639 -16.16782 -16.00684 -15.90312 -15.78180 -15.56980 -15.37263 -14.89473 -14.79707 -14.68400 -14.52458 -14.05084 -13.98120 -13.67853 -13.59155 -13.51211 -13.36846 -13.29561 -13.05550 -12.96948 -12.94295 -12.63497 -12.60082 -12.42414 -12.13277 -12.05636 -11.89066 -11.73847 -11.60526 -11.40614 -11.23250 -10.56865 -10.44694 -10.11068 -9.93822 -9.38088 -0.29652 -0.15145 1.12549 1.35266 1.50260 1.54496 1.66157 1.71024 1.97302 1.99532 2.17454 2.35525 2.75452 3.15032 3.34805 3.43346 3.51343 3.70027 3.80022 3.81662 3.93189 3.99721 4.09203 4.09838 4.14106 4.35423 4.44518 4.45659 4.46418 4.59586 4.63410 4.67787 4.70611 4.76390 4.78377 4.78866 4.84034 4.97749 5.03461 5.08349 5.09246 5.12297 5.25151 5.31686 5.37944 5.39149 5.46931 5.48685 5.56656 6.05688 6.42964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.287 2.713 6 C -0.511 4.511 7 C -0.511 4.511 8 O -0.619 6.619 9 C 0.086 3.914 10 C 0.054 3.946 11 O -0.290 6.290 12 C 0.133 3.867 13 C -0.192 4.192 14 C -0.036 4.036 15 C -0.164 4.164 16 C -0.071 4.071 17 O -0.533 6.533 18 Si 0.930 3.070 19 H -0.229 1.229 20 H -0.251 1.251 21 H -0.250 1.250 22 C 0.098 3.902 23 F -0.112 7.112 24 C 0.040 3.960 25 F -0.117 7.117 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.149 0.851 46 H 0.148 0.852 47 H 0.125 0.875 48 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.099 1.549 4.693 5.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.418 2.582 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.578 6.578 9 C 0.010 3.990 10 C -0.021 4.021 11 O -0.202 6.202 12 C 0.086 3.914 13 C -0.211 4.211 14 C -0.054 4.054 15 C -0.166 4.166 16 C -0.182 4.182 17 O -0.339 6.339 18 Si 0.750 3.250 19 H -0.152 1.152 20 H -0.175 1.175 21 H -0.173 1.173 22 C 0.077 3.923 23 F -0.091 7.091 24 C 0.019 3.981 25 F -0.096 7.096 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.167 0.833 46 H 0.166 0.834 47 H 0.143 0.857 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.700 1.175 3.884 4.874 hybrid contribution 0.893 0.873 0.097 1.253 sum -1.807 2.049 3.980 4.828 Atomic orbital electron populations 1.21509 0.93843 1.01956 1.01781 1.25772 1.00647 1.02609 1.12740 1.21556 1.00803 0.94889 1.02135 1.21511 1.00670 1.00303 0.96676 0.76732 0.63129 0.53245 0.65077 1.27040 1.07021 1.09646 1.17618 1.27028 1.24963 1.04720 1.04595 1.85412 1.79124 1.46095 1.47193 1.22091 0.99534 0.89457 0.87914 1.23188 0.99458 0.92145 0.87315 1.86234 1.64248 1.22123 1.47616 1.18734 0.94227 0.85328 0.93138 1.21304 1.00745 0.97048 1.02012 1.20795 0.97389 0.92715 0.94511 1.20148 1.00134 0.98947 0.97352 1.24860 0.94580 0.85128 1.13586 1.86540 1.24110 1.56194 1.67026 0.86206 0.82093 0.81728 0.74929 1.15194 1.17536 1.17313 1.17269 0.98112 0.89144 0.87745 1.91612 1.86124 1.77959 1.53388 1.16727 0.97463 0.91074 0.92791 1.91561 1.64802 1.83300 1.69914 0.92723 0.92781 0.92210 0.92500 0.92479 0.92541 0.92086 0.92806 0.92674 0.91502 0.90578 0.90827 0.90716 0.90717 0.91515 0.90064 0.91241 0.90042 0.90118 0.83343 0.83381 0.85718 0.77545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.00 7.85 37.16 0.29 0.30 16 2 C -0.37 0.09 0.53 -90.62 -0.05 0.04 16 3 C -0.14 0.08 7.85 37.16 0.29 0.38 16 4 C -0.13 -0.09 7.85 37.15 0.29 0.20 16 5 Si 1.29 -1.76 8.45 -169.99 -1.44 -3.20 16 6 C -0.51 0.84 8.50 101.05 0.86 1.70 16 7 C -0.51 0.33 8.50 101.05 0.86 1.19 16 8 O -0.62 0.06 8.52 -40.09 -0.34 -0.28 16 9 C 0.09 -0.19 5.50 37.16 0.20 0.02 16 10 C 0.05 -0.12 5.12 37.16 0.19 0.07 16 11 O -0.29 -0.45 9.97 -24.46 -0.24 -0.69 16 12 C 0.13 0.17 6.69 -39.19 -0.26 -0.10 16 13 C -0.19 0.29 9.04 -39.43 -0.36 -0.06 16 14 C -0.04 0.06 9.66 -39.60 -0.38 -0.32 16 15 C -0.16 0.00 4.78 -104.54 -0.50 -0.50 16 16 C -0.07 0.05 2.81 36.00 0.10 0.15 16 17 O -0.53 -0.24 12.88 -35.23 -0.45 -0.69 16 18 Si 0.93 0.33 26.09 -169.99 -4.43 -4.10 16 19 H -0.23 -0.33 5.29 56.52 0.30 -0.03 16 20 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 21 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 22 C 0.10 0.18 6.62 -39.39 -0.26 -0.08 16 23 F -0.11 -0.29 12.51 2.25 0.03 -0.26 16 24 C 0.04 0.12 7.32 -39.25 -0.29 -0.17 16 25 F -0.12 -0.58 17.03 2.25 0.04 -0.55 16 26 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 27 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.06 0.01 7.97 -51.93 -0.41 -0.40 16 29 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 30 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 32 H 0.06 0.08 7.97 -51.93 -0.41 -0.33 16 33 H 0.05 0.05 8.14 -51.92 -0.42 -0.38 16 34 H 0.05 0.01 7.79 -51.93 -0.40 -0.39 16 35 H 0.07 -0.16 7.48 -51.93 -0.39 -0.54 16 36 H 0.08 -0.12 7.79 -51.93 -0.40 -0.53 16 37 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 38 H 0.07 0.01 7.79 -51.93 -0.40 -0.39 16 39 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 40 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 41 H 0.08 -0.40 7.21 -51.93 -0.37 -0.77 16 42 H 0.07 -0.19 7.21 -51.93 -0.37 -0.56 16 43 H 0.08 -0.39 7.66 -51.93 -0.40 -0.79 16 44 H 0.08 -0.26 7.66 -51.93 -0.40 -0.65 16 45 H 0.15 -0.65 6.30 -52.49 -0.33 -0.98 16 46 H 0.15 -0.65 8.00 -52.49 -0.42 -1.07 16 47 H 0.12 -0.33 7.77 -51.93 -0.40 -0.73 16 48 H 0.38 -0.71 8.42 45.56 0.38 -0.32 16 LS Contribution 391.42 15.07 5.90 5.90 Total: 0.00 -6.19 391.42 -7.28 -13.46 By element: Atomic # 1 Polarization: -5.09 SS G_CDS: -7.32 Total: -12.41 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 0.99 Total: 2.82 kcal Atomic # 8 Polarization: -0.62 SS G_CDS: -1.04 Total: -1.66 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 0.07 Total: -0.80 kcal Atomic # 14 Polarization: -1.43 SS G_CDS: -5.87 Total: -7.30 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -6.19 -7.28 -13.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13025868_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.549 kcal (2) G-P(sol) polarization free energy of solvation -6.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds