Wall clock time and date at job start Tue Mar 9 2021 14:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47642 * 2 1 4 4 C 1.53002 * 109.47283 * 239.99707 * 2 1 3 5 5 Si 1.86304 * 109.47113 * 120.00033 * 2 1 3 6 6 C 1.86299 * 109.47198 * 299.99793 * 5 2 1 7 7 C 1.86298 * 109.47497 * 179.97438 * 5 2 1 8 8 O 1.63105 * 109.47094 * 59.99559 * 5 2 1 9 9 C 1.42896 * 114.00135 * 180.02562 * 8 5 2 10 10 O 1.42900 * 109.47485 * 180.02562 * 9 8 5 11 11 C 1.35954 * 116.99843 * 74.99621 * 10 9 8 12 12 C 1.38663 * 120.04995 * 0.02562 * 11 10 9 13 13 C 1.38218 * 120.01070 * 180.02562 * 12 11 10 14 14 C 1.38202 * 120.11432 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.95014 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47079 * 15.00302 * 15 14 13 17 17 Si 1.86301 * 109.47149 * 134.99798 * 15 14 13 18 18 H 1.48506 * 109.47302 * 59.99966 * 17 15 14 19 19 H 1.48503 * 109.47334 * 300.00099 * 17 15 14 20 20 H 1.48500 * 109.47376 * 180.02562 * 17 15 14 21 21 C 1.38498 * 120.10241 * 0.22830 * 14 13 12 22 22 F 1.35098 * 120.00852 * 179.72681 * 21 14 13 23 23 C 1.38503 * 119.98061 * 359.49327 * 21 14 13 24 24 F 1.35098 * 120.05306 * 180.27182 * 23 21 14 25 25 H 1.09001 * 109.46828 * 300.00194 * 1 2 3 26 26 H 1.09000 * 109.46738 * 59.99544 * 1 2 3 27 27 H 1.08998 * 109.47305 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47472 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47089 * 299.99686 * 3 2 1 30 30 H 1.09001 * 109.47167 * 60.00014 * 3 2 1 31 31 H 1.08998 * 109.47257 * 300.00405 * 4 2 1 32 32 H 1.08995 * 109.47075 * 60.00542 * 4 2 1 33 33 H 1.08999 * 109.47077 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47493 * 179.97438 * 6 5 2 35 35 H 1.08998 * 109.47202 * 299.99939 * 6 5 2 36 36 H 1.09003 * 109.47018 * 59.99345 * 6 5 2 37 37 H 1.09005 * 109.47192 * 300.00226 * 7 5 2 38 38 H 1.09004 * 109.47206 * 59.99326 * 7 5 2 39 39 H 1.08999 * 109.47634 * 180.02562 * 7 5 2 40 40 H 1.09004 * 109.47024 * 59.99881 * 9 8 5 41 41 H 1.09011 * 109.47222 * 300.00280 * 9 8 5 42 42 H 1.07994 * 119.99532 * 359.97438 * 12 11 10 43 43 H 1.07994 * 119.94261 * 179.97438 * 13 12 11 44 44 H 1.09001 * 109.47380 * 254.99699 * 15 14 13 45 45 H 0.96698 * 114.00299 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8783 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8790 1.5209 8 8 1.6072 -2.4160 1.5212 9 6 2.0283 -3.1814 2.6520 10 8 1.5008 -4.5058 2.5541 11 6 2.0898 -5.3400 1.6565 12 6 3.1532 -4.8929 0.8871 13 6 3.7510 -5.7414 -0.0256 14 6 3.2905 -7.0360 -0.1737 15 6 3.9448 -7.9579 -1.1703 16 8 5.2004 -7.4085 -1.5744 17 14 4.2201 -9.6253 -0.3862 18 1 2.9152 -10.1964 0.0340 19 1 5.0998 -9.4750 0.8008 20 1 4.8654 -10.5336 -1.3680 21 6 2.2253 -7.4859 0.5886 22 9 1.7732 -8.7501 0.4384 23 6 1.6269 -6.6409 1.5085 24 9 0.5913 -7.0799 2.2568 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6769 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.8930 -0.5141 3.9323 35 1 1.8934 1.0276 3.0423 36 1 0.4400 0.0001 3.0423 37 1 4.3770 -1.3931 0.6309 38 1 4.3777 0.1485 1.5206 39 1 4.3773 -1.3932 2.4106 40 1 1.6635 -2.7112 3.5653 41 1 3.1173 -3.2253 2.6759 42 1 3.5138 -3.8812 1.0003 43 1 4.5789 -5.3920 -0.6246 44 1 3.2991 -8.0683 -2.0415 45 1 5.6782 -7.9503 -2.2173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13025868_14468166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:20:24 Heat of formation + Delta-G solvation = -222.093995 kcal Electronic energy + Delta-G solvation = -28033.698175 eV Core-core repulsion = 23811.493972 eV Total energy + Delta-G solvation = -4222.204203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.58839 -49.52031 -41.35923 -39.38073 -37.67052 -36.95182 -36.86203 -32.05687 -31.48772 -29.66445 -29.24921 -27.97047 -27.74608 -27.50577 -26.19795 -23.93485 -22.71256 -20.58730 -19.95094 -19.21180 -18.56533 -18.38518 -18.06451 -17.66579 -17.26197 -16.62413 -16.37631 -16.09564 -16.00358 -15.83338 -15.70314 -15.14075 -15.00835 -14.92334 -14.75505 -14.52921 -14.33042 -14.12584 -13.90042 -13.71118 -13.60382 -13.42344 -13.21460 -13.04407 -13.03060 -12.89243 -12.60388 -12.52643 -12.49491 -12.12665 -11.94073 -11.87337 -11.70947 -11.64459 -11.35394 -10.69673 -10.62702 -10.21447 -9.82182 -9.24769 -0.20913 -0.06621 1.04194 1.14685 1.44293 1.49622 1.54909 1.80482 1.84070 1.96511 2.23470 2.31722 2.69831 3.10099 3.31824 3.51034 3.57197 3.65958 3.85681 3.92738 4.01796 4.02270 4.08693 4.28543 4.35967 4.47846 4.50243 4.54683 4.56954 4.59951 4.71827 4.77015 4.85368 4.88075 4.91208 5.01732 5.02025 5.02289 5.12394 5.13237 5.24386 5.30775 5.38145 5.40383 5.41610 5.46700 6.01256 6.42809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.372 4.372 3 C -0.137 4.137 4 C -0.135 4.135 5 Si 1.291 2.709 6 C -0.513 4.513 7 C -0.515 4.515 8 O -0.645 6.645 9 C 0.247 3.753 10 O -0.286 6.286 11 C 0.127 3.873 12 C -0.178 4.178 13 C -0.035 4.035 14 C -0.120 4.120 15 C -0.072 4.072 16 O -0.545 6.545 17 Si 0.930 3.070 18 H -0.227 1.227 19 H -0.247 1.247 20 H -0.254 1.254 21 C 0.092 3.908 22 F -0.111 7.111 23 C 0.044 3.956 24 F -0.118 7.118 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.148 0.852 43 H 0.155 0.845 44 H 0.087 0.913 45 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 2.936 -1.189 4.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.416 4.416 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.424 2.576 6 C -0.616 4.616 7 C -0.617 4.617 8 O -0.605 6.605 9 C 0.135 3.865 10 O -0.200 6.200 11 C 0.081 3.919 12 C -0.197 4.197 13 C -0.053 4.053 14 C -0.122 4.122 15 C -0.181 4.181 16 O -0.351 6.351 17 Si 0.750 3.250 18 H -0.150 1.150 19 H -0.170 1.170 20 H -0.178 1.178 21 C 0.072 3.928 22 F -0.089 7.089 23 C 0.023 3.977 24 F -0.096 7.096 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.086 0.914 42 H 0.165 0.835 43 H 0.173 0.827 44 H 0.105 0.895 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.153 2.301 -0.370 3.921 hybrid contribution 0.077 0.398 -0.467 0.619 sum 3.230 2.700 -0.837 4.292 Atomic orbital electron populations 1.21525 0.93660 1.02142 1.01942 1.25746 1.00818 1.02634 1.12369 1.21562 1.00793 0.94778 1.02315 1.21525 1.00606 1.00293 0.96803 0.76591 0.63041 0.52257 0.65700 1.27036 1.07421 1.09825 1.17284 1.27066 1.24550 1.05457 1.04661 1.85329 1.79981 1.46666 1.48546 1.23537 0.96490 0.77939 0.88547 1.86333 1.58212 1.21675 1.53746 1.18662 0.92932 0.88518 0.91797 1.21318 0.97278 1.02002 0.99068 1.20719 0.98297 0.90628 0.95626 1.19100 0.96670 0.96620 0.99765 1.24418 0.87785 1.05709 1.00233 1.86348 1.31503 1.51554 1.65724 0.86173 0.82277 0.75294 0.81255 1.14978 1.17049 1.17833 1.17008 0.96891 0.80566 0.98381 1.91609 1.88170 1.34630 1.94539 1.16606 0.91952 0.91461 0.97645 1.91554 1.54663 1.89337 1.74051 0.92624 0.92638 0.92102 0.92443 0.92334 0.92457 0.92140 0.92625 0.92612 0.91364 0.90274 0.90498 0.90534 0.90082 0.91326 0.86704 0.91442 0.83473 0.82733 0.89539 0.76453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.07 7.85 37.16 0.29 0.36 16 2 C -0.37 0.49 0.53 -90.62 -0.05 0.45 16 3 C -0.14 0.23 7.85 37.16 0.29 0.52 16 4 C -0.14 0.12 7.85 37.16 0.29 0.41 16 5 Si 1.29 -3.31 8.45 -169.99 -1.44 -4.75 16 6 C -0.51 1.14 8.50 101.05 0.86 2.00 16 7 C -0.52 1.48 8.50 101.05 0.86 2.34 16 8 O -0.65 0.41 8.04 -59.04 -0.47 -0.07 16 9 C 0.25 -0.31 5.42 101.05 0.55 0.24 16 10 O -0.29 -0.64 10.26 -43.41 -0.45 -1.09 16 11 C 0.13 0.31 6.63 -39.19 -0.26 0.05 16 12 C -0.18 -0.06 8.78 -39.43 -0.35 -0.41 16 13 C -0.03 -0.01 9.36 -39.60 -0.37 -0.38 16 14 C -0.12 -0.16 5.15 -104.54 -0.54 -0.70 16 15 C -0.07 0.04 2.95 36.01 0.11 0.15 16 16 O -0.54 0.82 11.48 -35.23 -0.40 0.41 16 17 Si 0.93 0.21 26.10 -169.99 -4.44 -4.23 16 18 H -0.23 -0.38 5.30 56.52 0.30 -0.08 16 19 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 20 H -0.25 0.03 7.11 56.52 0.40 0.43 16 21 C 0.09 0.27 6.66 -39.39 -0.26 0.00 16 22 F -0.11 -0.39 12.78 2.25 0.03 -0.36 16 23 C 0.04 0.17 7.32 -39.25 -0.29 -0.12 16 24 F -0.12 -0.63 17.03 2.25 0.04 -0.59 16 25 H 0.05 -0.06 7.79 -51.93 -0.40 -0.47 16 26 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 27 H 0.06 0.01 7.97 -51.93 -0.41 -0.41 16 28 H 0.06 -0.14 7.79 -51.93 -0.40 -0.55 16 29 H 0.06 -0.06 8.14 -51.93 -0.42 -0.49 16 30 H 0.06 -0.13 7.79 -51.93 -0.40 -0.54 16 31 H 0.06 -0.02 7.96 -51.93 -0.41 -0.44 16 32 H 0.05 -0.02 8.14 -51.93 -0.42 -0.45 16 33 H 0.05 -0.10 7.79 -51.93 -0.40 -0.50 16 34 H 0.07 -0.20 7.48 -51.93 -0.39 -0.59 16 35 H 0.08 -0.19 7.79 -51.93 -0.40 -0.60 16 36 H 0.08 -0.13 7.79 -51.93 -0.40 -0.53 16 37 H 0.08 -0.22 7.79 -51.93 -0.40 -0.62 16 38 H 0.08 -0.24 7.79 -51.93 -0.40 -0.64 16 39 H 0.07 -0.24 7.48 -51.93 -0.39 -0.63 16 40 H 0.12 -0.42 7.21 -51.93 -0.37 -0.80 16 41 H 0.07 -0.25 5.77 -51.92 -0.30 -0.55 16 42 H 0.15 -0.28 5.85 -52.49 -0.31 -0.59 16 43 H 0.16 -0.16 7.13 -52.49 -0.37 -0.54 16 44 H 0.09 -0.19 7.96 -51.93 -0.41 -0.60 16 45 H 0.39 -2.17 8.74 45.56 0.40 -1.77 16 LS Contribution 367.29 15.07 5.53 5.53 Total: 0.00 -5.82 367.29 -6.84 -12.66 By element: Atomic # 1 Polarization: -6.07 SS G_CDS: -6.38 Total: -12.45 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 1.13 Total: 4.93 kcal Atomic # 8 Polarization: 0.58 SS G_CDS: -1.32 Total: -0.74 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.07 Total: -0.96 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: -5.87 Total: -8.97 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -5.82 -6.84 -12.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13025868_14468166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.437 kcal (2) G-P(sol) polarization free energy of solvation -5.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds