Wall clock time and date at job start Tue Mar 9 2021 14:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47642 * 2 1 4 4 C 1.53002 * 109.47283 * 239.99707 * 2 1 3 5 5 Si 1.86304 * 109.47113 * 120.00033 * 2 1 3 6 6 C 1.86299 * 109.47198 * 299.99793 * 5 2 1 7 7 C 1.86298 * 109.47497 * 179.97438 * 5 2 1 8 8 O 1.63105 * 109.47094 * 59.99559 * 5 2 1 9 9 C 1.42896 * 114.00135 * 180.02562 * 8 5 2 10 10 O 1.42900 * 109.47485 * 180.02562 * 9 8 5 11 11 C 1.35954 * 116.99843 * 74.99621 * 10 9 8 12 12 C 1.38663 * 120.04995 * 0.02562 * 11 10 9 13 13 C 1.38218 * 120.01070 * 180.02562 * 12 11 10 14 14 C 1.38202 * 120.11432 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.95014 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47079 * 15.00302 * 15 14 13 17 17 Si 1.86301 * 109.47149 * 134.99798 * 15 14 13 18 18 H 1.48506 * 109.47302 * 59.99966 * 17 15 14 19 19 H 1.48503 * 109.47334 * 300.00099 * 17 15 14 20 20 H 1.48500 * 109.47376 * 180.02562 * 17 15 14 21 21 C 1.38498 * 120.10241 * 0.22830 * 14 13 12 22 22 F 1.35098 * 120.00852 * 179.72681 * 21 14 13 23 23 C 1.38503 * 119.98061 * 359.49327 * 21 14 13 24 24 F 1.35098 * 120.05306 * 180.27182 * 23 21 14 25 25 H 1.09001 * 109.46828 * 300.00194 * 1 2 3 26 26 H 1.09000 * 109.46738 * 59.99544 * 1 2 3 27 27 H 1.08998 * 109.47305 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47472 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47089 * 299.99686 * 3 2 1 30 30 H 1.09001 * 109.47167 * 60.00014 * 3 2 1 31 31 H 1.08998 * 109.47257 * 300.00405 * 4 2 1 32 32 H 1.08995 * 109.47075 * 60.00542 * 4 2 1 33 33 H 1.08999 * 109.47077 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47493 * 179.97438 * 6 5 2 35 35 H 1.08998 * 109.47202 * 299.99939 * 6 5 2 36 36 H 1.09003 * 109.47018 * 59.99345 * 6 5 2 37 37 H 1.09005 * 109.47192 * 300.00226 * 7 5 2 38 38 H 1.09004 * 109.47206 * 59.99326 * 7 5 2 39 39 H 1.08999 * 109.47634 * 180.02562 * 7 5 2 40 40 H 1.09004 * 109.47024 * 59.99881 * 9 8 5 41 41 H 1.09011 * 109.47222 * 300.00280 * 9 8 5 42 42 H 1.07994 * 119.99532 * 359.97438 * 12 11 10 43 43 H 1.07994 * 119.94261 * 179.97438 * 13 12 11 44 44 H 1.09001 * 109.47380 * 254.99699 * 15 14 13 45 45 H 0.96698 * 114.00299 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8783 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8790 1.5209 8 8 1.6072 -2.4160 1.5212 9 6 2.0283 -3.1814 2.6520 10 8 1.5008 -4.5058 2.5541 11 6 2.0898 -5.3400 1.6565 12 6 3.1532 -4.8929 0.8871 13 6 3.7510 -5.7414 -0.0256 14 6 3.2905 -7.0360 -0.1737 15 6 3.9448 -7.9579 -1.1703 16 8 5.2004 -7.4085 -1.5744 17 14 4.2201 -9.6253 -0.3862 18 1 2.9152 -10.1964 0.0340 19 1 5.0998 -9.4750 0.8008 20 1 4.8654 -10.5336 -1.3680 21 6 2.2253 -7.4859 0.5886 22 9 1.7732 -8.7501 0.4384 23 6 1.6269 -6.6409 1.5085 24 9 0.5913 -7.0799 2.2568 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6769 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.8930 -0.5141 3.9323 35 1 1.8934 1.0276 3.0423 36 1 0.4400 0.0001 3.0423 37 1 4.3770 -1.3931 0.6309 38 1 4.3777 0.1485 1.5206 39 1 4.3773 -1.3932 2.4106 40 1 1.6635 -2.7112 3.5653 41 1 3.1173 -3.2253 2.6759 42 1 3.5138 -3.8812 1.0003 43 1 4.5789 -5.3920 -0.6246 44 1 3.2991 -8.0683 -2.0415 45 1 5.6782 -7.9503 -2.2173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13025868_14468166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:20:23 Heat of formation + Delta-G solvation = -215.123926 kcal Electronic energy + Delta-G solvation = -28033.395930 eV Core-core repulsion = 23811.493972 eV Total energy + Delta-G solvation = -4221.901958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.80123 -49.78302 -41.38306 -39.36031 -37.55609 -36.84317 -36.78385 -32.07877 -31.57012 -29.43342 -29.06267 -27.82896 -27.68205 -27.37605 -26.13348 -24.02493 -22.75118 -20.48516 -19.98574 -19.25321 -18.49543 -18.46108 -18.08548 -17.78879 -17.30126 -16.59655 -16.50744 -16.12596 -15.92866 -15.87445 -15.83012 -15.11139 -14.99530 -14.81472 -14.71859 -14.52855 -14.20569 -14.09669 -13.78662 -13.51576 -13.37326 -13.28284 -13.16866 -12.95523 -12.90585 -12.89557 -12.59511 -12.55707 -12.38074 -11.94178 -11.92343 -11.77065 -11.58421 -11.51592 -11.45375 -10.63149 -10.40944 -10.07095 -9.95530 -9.30280 -0.30541 -0.15576 1.12765 1.27190 1.40793 1.49341 1.68200 1.87254 1.94538 2.08182 2.25333 2.40942 2.67918 3.09971 3.24319 3.57985 3.67188 3.72290 3.89866 4.03040 4.08851 4.12981 4.13558 4.38103 4.46154 4.60636 4.72987 4.75289 4.80587 4.81045 4.82371 4.83379 4.85350 4.95428 5.01370 5.07272 5.10584 5.10861 5.11351 5.26754 5.36857 5.38408 5.42270 5.47674 5.61633 5.68565 5.99868 6.79335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.383 4.383 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.323 2.677 6 C -0.523 4.523 7 C -0.518 4.518 8 O -0.663 6.663 9 C 0.230 3.770 10 O -0.308 6.308 11 C 0.121 3.879 12 C -0.170 4.170 13 C -0.029 4.029 14 C -0.126 4.126 15 C -0.060 4.060 16 O -0.550 6.550 17 Si 0.951 3.049 18 H -0.256 1.256 19 H -0.275 1.275 20 H -0.244 1.244 21 C 0.078 3.922 22 F -0.121 7.121 23 C 0.012 3.988 24 F -0.137 7.137 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.096 0.904 42 H 0.173 0.827 43 H 0.176 0.824 44 H 0.108 0.892 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 3.985 -1.646 6.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.425 4.425 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.454 2.546 6 C -0.625 4.625 7 C -0.621 4.621 8 O -0.623 6.623 9 C 0.119 3.881 10 O -0.222 6.222 11 C 0.074 3.926 12 C -0.188 4.188 13 C -0.046 4.046 14 C -0.127 4.127 15 C -0.170 4.170 16 O -0.360 6.360 17 Si 0.774 3.226 18 H -0.180 1.180 19 H -0.200 1.200 20 H -0.168 1.168 21 C 0.057 3.943 22 F -0.100 7.100 23 C -0.009 4.009 24 F -0.115 7.115 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.153 0.847 41 H 0.113 0.887 42 H 0.190 0.810 43 H 0.193 0.807 44 H 0.125 0.875 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.026 3.349 -0.861 6.100 hybrid contribution -0.506 0.105 -0.314 0.605 sum 4.520 3.453 -1.175 5.809 Atomic orbital electron populations 1.21555 0.94789 1.01459 1.01798 1.25959 0.99982 1.03234 1.13369 1.21605 1.01573 0.94478 1.02149 1.21550 1.01438 0.99790 0.96669 0.76039 0.63280 0.51071 0.64162 1.27138 1.06927 1.10312 1.18114 1.27041 1.23550 1.06012 1.05463 1.85319 1.80615 1.47429 1.48919 1.24064 0.98249 0.76616 0.89162 1.86315 1.58968 1.23129 1.53790 1.18819 0.93413 0.88108 0.92219 1.21612 0.96146 1.03045 0.98042 1.21010 0.98291 0.90037 0.95299 1.19378 0.96095 0.97503 0.99738 1.24211 0.88609 1.03884 1.00343 1.86300 1.31085 1.52069 1.66524 0.85897 0.80076 0.76338 0.80250 1.17983 1.19960 1.16756 1.17222 0.97760 0.80265 0.99010 1.91583 1.88444 1.35268 1.94661 1.16999 0.92476 0.92727 0.98661 1.91486 1.55670 1.89682 1.74699 0.92126 0.93476 0.93023 0.91256 0.93344 0.91864 0.92796 0.93617 0.91289 0.90415 0.89968 0.91394 0.90138 0.89729 0.90162 0.84652 0.88667 0.80951 0.80696 0.87495 0.74213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.01 7.85 71.98 0.56 0.58 16 2 C -0.38 1.06 0.53 -10.79 -0.01 1.05 16 3 C -0.14 0.52 7.85 71.98 0.56 1.09 16 4 C -0.14 0.26 7.85 71.98 0.56 0.83 16 5 Si 1.32 -8.26 8.45 68.60 0.58 -7.68 16 6 C -0.52 2.80 8.50 113.37 0.96 3.76 16 7 C -0.52 4.24 8.50 113.37 0.96 5.20 16 8 O -0.66 1.31 8.04 -126.21 -1.01 0.30 16 9 C 0.23 -0.80 5.42 113.37 0.61 -0.19 16 10 O -0.31 -1.53 10.26 -70.26 -0.72 -2.25 16 11 C 0.12 0.65 6.63 22.52 0.15 0.80 16 12 C -0.17 0.06 8.78 22.37 0.20 0.26 16 13 C -0.03 0.02 9.36 22.26 0.21 0.23 16 14 C -0.13 -0.31 5.15 -19.81 -0.10 -0.41 16 15 C -0.06 0.13 2.95 71.24 0.21 0.34 16 16 O -0.55 2.78 11.48 -148.98 -1.71 1.07 16 17 Si 0.95 0.90 26.10 68.60 1.79 2.69 16 18 H -0.26 -1.38 5.30 99.48 0.53 -0.85 16 19 H -0.27 -1.44 7.11 99.48 0.71 -0.73 16 20 H -0.24 0.23 7.11 99.48 0.71 0.93 16 21 C 0.08 0.56 6.66 22.40 0.15 0.71 16 22 F -0.12 -1.12 12.78 44.97 0.57 -0.55 16 23 C 0.01 0.11 7.32 22.48 0.16 0.28 16 24 F -0.14 -1.86 17.03 44.97 0.77 -1.09 16 25 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 26 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.05 0.08 7.97 -2.39 -0.02 0.06 16 28 H 0.07 -0.42 7.79 -2.39 -0.02 -0.44 16 29 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.06 -0.32 7.79 -2.39 -0.02 -0.34 16 31 H 0.05 -0.03 7.96 -2.39 -0.02 -0.05 16 32 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.07 -0.33 7.79 -2.39 -0.02 -0.35 16 34 H 0.08 -0.57 7.48 -2.39 -0.02 -0.58 16 35 H 0.08 -0.48 7.79 -2.39 -0.02 -0.50 16 36 H 0.07 -0.23 7.79 -2.39 -0.02 -0.25 16 37 H 0.08 -0.68 7.79 -2.38 -0.02 -0.70 16 38 H 0.08 -0.70 7.79 -2.39 -0.02 -0.72 16 39 H 0.08 -0.81 7.48 -2.39 -0.02 -0.83 16 40 H 0.14 -1.15 7.21 -2.38 -0.02 -1.17 16 41 H 0.10 -0.92 5.77 -2.38 -0.01 -0.93 16 42 H 0.17 -1.07 5.85 -2.91 -0.02 -1.09 16 43 H 0.18 -0.84 7.13 -2.91 -0.02 -0.86 16 44 H 0.11 -0.62 7.96 -2.39 -0.02 -0.64 16 45 H 0.41 -5.50 8.74 -74.06 -0.65 -6.14 16 Total: 0.00 -15.76 367.29 6.40 -9.36 By element: Atomic # 1 Polarization: -17.31 SS G_CDS: 0.93 Total: -16.39 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 5.21 Total: 14.54 kcal Atomic # 8 Polarization: 2.56 SS G_CDS: -3.45 Total: -0.89 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 1.34 Total: -1.64 kcal Atomic # 14 Polarization: -7.36 SS G_CDS: 2.37 Total: -4.99 kcal Total: -15.76 6.40 -9.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13025868_14468166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.759 kcal (2) G-P(sol) polarization free energy of solvation -15.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds