Wall clock time and date at job start Tue Mar 9 2021 14:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47213 * 2 1 4 4 C 1.52995 * 109.47644 * 239.99926 * 2 1 3 5 5 O 1.45200 * 109.47559 * 119.99730 * 2 1 3 6 6 C 1.34635 * 117.00035 * 59.99825 * 5 2 1 7 7 O 1.21515 * 119.99773 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00205 * 180.02562 * 6 5 2 9 9 C 1.46502 * 120.00162 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.84743 * 336.19152 * 9 8 6 11 11 C 1.53777 * 113.69546 * 107.46372 * 9 8 6 12 12 C 1.53775 * 87.08205 * 139.99200 * 11 9 8 13 13 H 1.09002 * 113.69201 * 89.12927 * 12 11 9 14 14 C 1.52998 * 113.61597 * 220.01953 * 12 11 9 15 15 O 1.42906 * 109.47400 * 272.49915 * 14 12 11 16 16 C 1.35955 * 116.99987 * 179.97438 * 15 14 12 17 17 C 1.38835 * 120.04548 * 179.72660 * 16 15 14 18 18 F 1.35105 * 120.05842 * 0.02562 * 17 16 15 19 19 C 1.38535 * 119.88253 * 179.72323 * 17 16 15 20 20 F 1.35107 * 120.00372 * 180.24954 * 19 17 16 21 21 C 1.38453 * 119.99028 * 0.53080 * 19 17 16 22 22 C 1.50701 * 119.95441 * 179.74641 * 21 19 17 23 23 O 1.42898 * 109.46938 * 195.02334 * 22 21 19 24 24 Si 1.86303 * 109.46934 * 315.01933 * 22 21 19 25 25 C 1.38252 * 120.09562 * 359.76677 * 21 19 17 26 26 C 1.38174 * 120.11280 * 359.95454 * 25 21 19 27 27 C 1.53782 * 87.08442 * 334.56878 * 12 11 9 28 28 H 1.09004 * 109.47077 * 300.00024 * 1 2 3 29 29 H 1.08996 * 109.47610 * 60.00459 * 1 2 3 30 30 H 1.09007 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47568 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46419 * 300.00507 * 3 2 1 33 33 H 1.08996 * 109.46994 * 59.99374 * 3 2 1 34 34 H 1.08998 * 109.47060 * 300.00340 * 4 2 1 35 35 H 1.09009 * 109.46926 * 59.99497 * 4 2 1 36 36 H 1.08994 * 109.48003 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00413 * 0.02562 * 8 6 5 38 38 H 1.09008 * 113.61067 * 25.44646 * 11 9 8 39 39 H 1.08994 * 113.61659 * 254.54496 * 11 9 8 40 40 H 1.08998 * 109.47592 * 152.49773 * 14 12 11 41 41 H 1.08999 * 109.47084 * 32.49875 * 14 12 11 42 42 H 1.08995 * 109.47320 * 75.01738 * 22 21 19 43 43 H 0.96702 * 114.00269 * 59.99660 * 23 22 21 44 44 H 1.48498 * 109.99997 * 58.68103 * 24 22 21 45 45 H 1.48496 * 109.99926 * 179.97438 * 24 22 21 46 46 H 1.07997 * 119.94606 * 179.97438 * 25 21 19 47 47 H 1.08004 * 119.99180 * 180.02562 * 26 25 21 48 48 H 1.09000 * 113.61406 * 139.97992 * 27 12 11 49 49 H 1.08998 * 113.61377 * 270.88746 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0673 -2.6652 2.4172 9 6 1.6742 -4.0667 2.5833 10 1 0.7602 -4.3166 2.0445 11 6 2.8214 -5.0627 2.3453 12 6 2.2719 -5.8602 3.5398 13 1 1.5213 -6.6009 3.2639 14 6 3.3618 -6.4295 4.4502 15 8 3.7711 -7.7084 3.9611 16 6 4.7409 -8.3553 4.6607 17 6 5.1822 -9.6042 4.2449 18 9 4.6491 -10.1784 3.1443 19 6 6.1746 -10.2578 4.9570 20 9 6.6095 -11.4711 4.5517 21 6 6.7167 -9.6702 6.0874 22 6 7.7922 -10.3845 6.8646 23 8 7.9407 -9.7708 8.1466 24 14 7.3166 -12.1725 7.0834 25 6 6.2724 -8.4292 6.5044 26 6 5.2868 -7.7710 5.7939 27 6 1.6743 -4.5372 4.0474 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 2.6264 -2.2362 3.0838 38 1 3.8105 -4.6395 2.5208 39 1 2.7492 -5.5932 1.3959 40 1 2.9713 -6.5356 5.4622 41 1 4.2169 -5.7536 4.4598 42 1 8.7349 -10.3232 6.3210 43 1 7.1386 -9.7888 8.6865 44 1 7.1280 -12.8138 5.7574 45 1 8.3695 -12.8881 7.8479 46 1 6.6966 -7.9732 7.3867 47 1 4.9415 -6.8014 6.1212 48 1 0.6760 -4.6435 4.4720 49 1 2.3498 -3.9704 4.6880 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13025868_15734236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:20:41 Heat of formation + Delta-G solvation = -173.249875 kcal Electronic energy + Delta-G solvation = -33596.071017 eV Core-core repulsion = 28549.018334 eV Total energy + Delta-G solvation = -5047.052682 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.163 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.81396 -49.78469 -41.93438 -41.36160 -40.29693 -39.12358 -37.92854 -37.16173 -35.42454 -34.25272 -31.97788 -31.59822 -29.45740 -28.39521 -28.31986 -26.83476 -26.63979 -25.09988 -23.94668 -23.01574 -22.23484 -21.42611 -20.58377 -19.83827 -19.14111 -19.00360 -18.58516 -17.87677 -17.76454 -17.65625 -17.42642 -17.20519 -16.91469 -16.68976 -16.31134 -16.12062 -16.01980 -15.94557 -15.62730 -15.55515 -15.38403 -15.13294 -14.50129 -14.24405 -14.14338 -13.61733 -13.50312 -13.48578 -13.40016 -13.37719 -13.26104 -13.07219 -12.93830 -12.88718 -12.65095 -12.61015 -12.45747 -12.39972 -12.22173 -11.96645 -11.70282 -11.48958 -11.41674 -11.32117 -11.12596 -10.68544 -10.16415 -9.95184 -9.28688 -5.05659 -0.28109 -0.12885 1.15311 1.25277 1.61682 1.71184 1.77408 1.96263 2.26518 2.74264 3.13429 3.15670 3.34037 3.38454 3.40236 3.49179 3.66758 3.72095 3.74728 3.78566 3.83309 3.89468 3.92302 4.02673 4.21776 4.27431 4.29640 4.45642 4.50079 4.58647 4.60420 4.63232 4.71149 4.74078 4.78705 4.80466 4.83876 4.84854 4.85697 4.94408 4.97723 5.03537 5.07359 5.09282 5.18139 5.24486 5.30183 5.42343 5.49956 5.59063 6.15690 6.39782 6.73947 7.33375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.369 6.369 6 C 0.641 3.359 7 O -0.597 6.597 8 N -0.687 5.687 9 C 0.132 3.868 10 H 0.100 0.900 11 C -0.150 4.150 12 C -0.104 4.104 13 H 0.099 0.901 14 C 0.062 3.938 15 O -0.323 6.323 16 C 0.125 3.875 17 C 0.004 3.996 18 F -0.143 7.143 19 C 0.079 3.921 20 F -0.128 7.128 21 C -0.158 4.158 22 C -0.047 4.047 23 O -0.541 6.541 24 Si 0.748 3.252 25 C -0.030 4.030 26 C -0.172 4.172 27 C -0.112 4.112 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.419 0.581 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.118 0.882 43 H 0.401 0.599 44 H -0.279 1.279 45 H -0.299 1.299 46 H 0.184 0.816 47 H 0.184 0.816 48 H 0.095 0.905 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 7.069 8.049 10.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.395 3.605 7 O -0.488 6.488 8 N -0.347 5.347 9 C 0.028 3.972 10 H 0.118 0.882 11 C -0.189 4.189 12 C -0.123 4.123 13 H 0.117 0.883 14 C -0.012 4.012 15 O -0.237 6.237 16 C 0.078 3.922 17 C -0.017 4.017 18 F -0.122 7.122 19 C 0.059 3.941 20 F -0.107 7.107 21 C -0.159 4.159 22 C -0.158 4.158 23 O -0.349 6.349 24 Si 0.654 3.346 25 C -0.048 4.048 26 C -0.190 4.190 27 C -0.150 4.150 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.257 0.743 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.135 0.865 43 H 0.252 0.748 44 H -0.206 1.206 45 H -0.226 1.226 46 H 0.201 0.799 47 H 0.201 0.799 48 H 0.113 0.887 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.846 6.050 6.982 9.278 hybrid contribution 0.471 -0.294 -1.142 1.269 sum -0.375 5.757 5.841 8.209 Atomic orbital electron populations 1.22471 0.94025 1.03647 1.03561 1.22339 0.94470 0.92605 0.81481 1.21889 1.02447 0.90808 1.04288 1.22474 1.01596 1.02198 0.97506 1.86308 1.71508 1.23331 1.47167 1.18483 0.78589 0.80718 0.82722 1.90910 1.42484 1.71089 1.44353 1.44737 1.54837 1.12174 1.22910 1.22566 0.98551 0.77066 0.99018 0.88189 1.23649 0.99432 0.96887 0.98930 1.22282 0.97610 0.96421 0.95973 0.88271 1.23263 0.98010 0.80844 0.99072 1.86152 1.51048 1.34535 1.51939 1.18833 0.90622 0.89988 0.92791 1.17176 1.00985 0.94012 0.89483 1.91480 1.85291 1.84432 1.50979 1.17415 0.97035 0.82693 0.96976 1.91560 1.88201 1.40672 1.90262 1.20244 1.01607 0.98327 0.95765 1.24646 0.98654 1.06743 0.85794 1.86485 1.41786 1.81229 1.25419 0.94575 0.86239 0.73825 0.79946 1.21097 0.93100 0.90726 0.99861 1.21658 0.99677 1.03405 0.94253 1.23331 1.03685 0.93588 0.94412 0.91755 0.89561 0.91883 0.91183 0.88422 0.91006 0.91950 0.89538 0.91997 0.74308 0.88353 0.92562 0.88371 0.89205 0.86481 0.74782 1.20588 1.22646 0.79873 0.79861 0.88659 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 2 C 0.13 0.34 1.13 -10.79 -0.01 0.33 16 3 C -0.14 0.35 8.85 71.99 0.64 0.99 16 4 C -0.18 -0.64 8.37 71.98 0.60 -0.03 16 5 O -0.37 -1.70 9.94 -55.44 -0.55 -2.25 16 6 C 0.64 3.76 8.06 129.79 1.05 4.80 16 7 O -0.60 -7.20 11.48 19.79 0.23 -6.97 16 8 N -0.69 1.22 5.36 -567.61 -3.04 -1.82 16 9 C 0.13 -0.42 4.24 45.52 0.19 -0.23 16 10 H 0.10 0.16 7.46 -2.39 -0.02 0.14 16 11 C -0.15 0.50 7.43 31.12 0.23 0.73 16 12 C -0.10 0.72 4.01 -10.27 -0.04 0.68 16 13 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 14 C 0.06 -0.52 4.58 71.98 0.33 -0.19 16 15 O -0.32 -0.26 10.00 -93.04 -0.93 -1.19 16 16 C 0.12 0.06 6.69 22.52 0.15 0.21 16 17 C 0.00 0.03 7.32 22.48 0.16 0.19 16 18 F -0.14 -1.80 17.03 44.97 0.77 -1.03 16 19 C 0.08 0.37 6.66 22.39 0.15 0.52 16 20 F -0.13 -1.22 12.74 44.97 0.57 -0.65 16 21 C -0.16 0.31 5.13 -19.81 -0.10 0.21 16 22 C -0.05 0.11 2.97 71.24 0.21 0.32 16 23 O -0.54 2.98 11.64 -148.98 -1.73 1.25 16 24 Si 0.75 0.01 30.81 68.60 2.11 2.12 16 25 C -0.03 0.23 9.23 22.26 0.21 0.44 16 26 C -0.17 1.28 9.04 22.36 0.20 1.48 16 27 C -0.11 1.17 7.39 31.12 0.23 1.40 16 28 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 29 H 0.09 -0.03 8.14 -2.39 -0.02 -0.04 16 30 H 0.06 0.53 5.88 -2.38 -0.01 0.52 16 31 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.10 -0.55 8.14 -2.38 -0.02 -0.56 16 33 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 35 H 0.09 0.01 8.14 -2.38 -0.02 0.00 16 36 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.42 -3.12 8.84 -92.71 -0.82 -3.94 16 38 H 0.10 -0.52 7.90 -2.38 -0.02 -0.53 16 39 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.10 -1.30 7.66 -2.39 -0.02 -1.32 16 41 H 0.09 -1.10 7.36 -2.39 -0.02 -1.11 16 42 H 0.12 -0.09 7.96 -2.39 -0.02 -0.11 16 43 H 0.40 -5.91 8.43 -74.06 -0.62 -6.54 16 44 H -0.28 -2.20 5.27 99.48 0.52 -1.68 16 45 H -0.30 -2.00 7.11 99.48 0.71 -1.29 16 46 H 0.18 -2.47 7.07 -2.91 -0.02 -2.49 16 47 H 0.18 -2.73 6.30 -2.91 -0.02 -2.75 16 48 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 49 H 0.12 -1.82 8.08 -2.39 -0.02 -1.84 16 Total: 0.00 -24.93 401.09 1.64 -23.29 By element: Atomic # 1 Polarization: -24.07 SS G_CDS: -0.58 Total: -24.65 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 4.80 Total: 11.90 kcal Atomic # 7 Polarization: 1.22 SS G_CDS: -3.04 Total: -1.82 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -2.99 Total: -9.16 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 1.34 Total: -1.68 kcal Atomic # 14 Polarization: 0.01 SS G_CDS: 2.11 Total: 2.12 kcal Total: -24.93 1.64 -23.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13025868_15734236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.958 kcal (2) G-P(sol) polarization free energy of solvation -24.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds