Wall clock time and date at job start Tue Mar 9 2021 14:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.38205 * 119.95487 * 254.99881 * 4 2 1 6 6 C 1.38219 * 120.11770 * 179.97438 * 5 4 2 7 7 C 1.38654 * 120.01254 * 0.02562 * 6 5 4 8 8 O 1.35947 * 120.04956 * 179.97438 * 7 6 5 9 9 C 1.42905 * 117.00290 * 0.02562 * 8 7 6 10 10 C 1.52994 * 109.47169 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47154 * 304.99709 * 10 9 8 12 12 C 1.53001 * 109.47450 * 65.00232 * 10 9 8 13 13 C 1.53002 * 109.47033 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47051 * 299.99608 * 13 12 10 15 15 H 1.09003 * 109.47115 * 300.00148 * 14 13 12 16 16 O 1.42899 * 109.46950 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.47194 * 60.00510 * 14 13 12 18 18 C 1.53002 * 109.46705 * 299.99701 * 17 14 13 19 19 C 1.38879 * 119.90270 * 359.97438 * 7 6 5 20 20 F 1.35096 * 120.06080 * 180.02562 * 19 7 6 21 21 C 1.38497 * 119.94905 * 74.72785 * 4 2 1 22 22 F 1.35099 * 120.00950 * 359.97438 * 21 4 2 23 23 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 24 24 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 25 25 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 26 26 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 27 27 H 1.08004 * 119.94019 * 0.02562 * 5 4 2 28 28 H 1.08000 * 119.99097 * 179.97438 * 6 5 4 29 29 H 1.08996 * 109.46696 * 300.00135 * 9 8 7 30 30 H 1.08998 * 109.47003 * 59.99930 * 9 8 7 31 31 H 1.09001 * 109.46571 * 299.99194 * 12 10 9 32 32 H 1.08989 * 109.47282 * 59.99636 * 12 10 9 33 33 H 1.08999 * 109.46753 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.47421 * 60.00068 * 13 12 10 35 35 H 0.96704 * 113.99853 * 59.99676 * 16 14 13 36 36 H 1.08995 * 109.46825 * 179.97438 * 17 14 13 37 37 H 1.08997 * 109.46978 * 59.99724 * 17 14 13 38 38 H 1.08997 * 109.47421 * 299.99751 * 18 17 14 39 39 H 1.08999 * 109.46753 * 180.02562 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4535 -1.9858 -1.1260 6 6 2.9148 -2.6407 -2.2524 7 6 2.8546 -2.0183 -3.4900 8 8 3.3085 -2.6616 -4.5983 9 6 3.8344 -3.9776 -4.4149 10 6 4.2927 -4.5362 -5.7635 11 1 3.4672 -4.4931 -6.4740 12 6 5.4627 -3.7025 -6.2898 13 6 5.9214 -4.2616 -7.6382 14 6 6.3686 -5.7141 -7.4625 15 1 7.1939 -5.7568 -6.7517 16 8 6.7975 -6.2360 -8.7217 17 6 5.1986 -6.5479 -6.9362 18 6 4.7399 -5.9888 -5.5879 19 6 2.3299 -0.7368 -3.5957 20 9 2.2693 -0.1276 -4.7999 21 6 1.8638 -0.0866 -2.4651 22 9 1.3474 1.1578 -2.5660 23 1 -0.3934 0.4417 -0.7651 24 1 1.7923 -0.5139 0.8900 25 1 1.5879 2.4585 -1.2243 26 1 1.5615 2.4679 1.2085 27 1 2.5006 -2.4718 -0.1627 28 1 3.3229 -3.6371 -2.1684 29 1 4.6825 -3.9379 -3.7313 30 1 3.0614 -4.6229 -3.9977 31 1 5.1442 -2.6676 -6.4146 32 1 6.2881 -3.7456 -5.5793 33 1 6.7546 -3.6674 -8.0133 34 1 5.0962 -4.2188 -8.3489 35 1 7.5384 -5.7549 -9.1151 36 1 5.5171 -7.5827 -6.8115 37 1 4.3734 -6.5051 -7.6470 38 1 5.5652 -6.0315 -4.8771 39 1 3.9067 -6.5830 -5.2127 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13025868_16737254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:20:45 Heat of formation + Delta-G solvation = -182.204561 kcal Electronic energy + Delta-G solvation = -24810.237977 eV Core-core repulsion = 20741.744091 eV Total energy + Delta-G solvation = -4068.493886 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.86211 -49.81279 -41.39320 -40.10576 -39.09918 -37.50503 -36.64150 -32.52622 -31.82613 -31.54435 -31.33426 -27.30506 -26.12967 -24.19947 -23.77888 -23.13483 -22.05114 -20.88730 -19.79940 -19.14333 -18.57195 -18.21229 -17.92460 -17.76123 -17.43416 -17.00032 -16.52033 -16.18673 -16.14433 -15.86332 -15.69240 -15.47733 -15.45142 -14.79157 -14.55328 -14.20539 -13.91452 -13.73134 -13.63571 -13.35673 -13.23807 -13.16792 -12.69773 -12.63419 -12.44801 -12.13104 -11.93466 -11.60216 -11.57025 -11.43119 -11.08924 -10.77879 -10.71699 -9.97516 -9.39774 -4.98245 -0.30005 -0.14289 1.23623 1.59229 1.73873 1.94145 2.21523 2.74074 3.10431 3.23263 3.33327 3.44900 3.54971 3.64946 3.69293 3.80897 3.85415 3.92822 4.09500 4.16486 4.27957 4.33875 4.36806 4.45106 4.48956 4.52947 4.55272 4.60767 4.81599 4.83325 4.92626 4.98624 5.07295 5.08795 5.10035 5.15696 5.19149 5.31219 5.40173 5.45718 6.12674 6.29141 6.85163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.062 4.062 3 Si 0.734 3.266 4 C -0.157 4.157 5 C -0.021 4.021 6 C -0.177 4.177 7 C 0.129 3.871 8 O -0.321 6.321 9 C 0.055 3.945 10 C -0.086 4.086 11 H 0.068 0.932 12 C -0.110 4.110 13 C -0.149 4.149 14 C 0.101 3.899 15 H 0.067 0.933 16 O -0.592 6.592 17 C -0.115 4.115 18 C -0.101 4.101 19 C 0.003 3.997 20 F -0.142 7.142 21 C 0.084 3.916 22 F -0.128 7.128 23 H 0.381 0.619 24 H 0.156 0.844 25 H -0.278 1.278 26 H -0.301 1.301 27 H 0.186 0.814 28 H 0.182 0.818 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.393 0.607 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 -5.140 4.305 8.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.172 4.172 3 Si 0.640 3.360 4 C -0.159 4.159 5 C -0.039 4.039 6 C -0.196 4.196 7 C 0.081 3.919 8 O -0.234 6.234 9 C -0.019 4.019 10 C -0.105 4.105 11 H 0.087 0.913 12 C -0.147 4.147 13 C -0.187 4.187 14 C 0.043 3.957 15 H 0.085 0.915 16 O -0.401 6.401 17 C -0.153 4.153 18 C -0.138 4.138 19 C -0.018 4.018 20 F -0.121 7.121 21 C 0.063 3.937 22 F -0.107 7.107 23 H 0.230 0.770 24 H 0.173 0.827 25 H -0.204 1.204 26 H -0.229 1.229 27 H 0.203 0.797 28 H 0.199 0.801 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.242 0.758 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.662 -4.909 4.693 8.237 hybrid contribution -0.983 1.090 -1.438 2.055 sum 3.679 -3.819 3.255 6.222 Atomic orbital electron populations 1.86605 1.18252 1.79985 1.50001 1.24936 0.83319 1.10518 0.98394 0.94841 0.90433 0.74474 0.76231 1.20165 1.05643 0.97696 0.92391 1.21249 0.91389 0.90587 1.00658 1.21681 1.05058 1.03266 0.89567 1.18851 0.94756 0.89805 0.88479 1.86133 1.75107 1.31962 1.30245 1.23305 0.99648 0.79657 0.99310 1.21208 0.98340 0.95530 0.95420 0.91302 1.21494 0.97866 0.98887 0.96470 1.22231 1.01698 0.96570 0.98189 1.21938 0.96662 0.92088 0.85053 0.91488 1.86482 1.56126 1.60271 1.37197 1.21486 0.97085 0.99580 0.97145 1.21428 1.02580 0.93157 0.96642 1.17156 1.11231 0.92703 0.80699 1.91478 1.95054 1.82951 1.42644 1.17548 1.01100 0.81269 0.93744 1.91553 1.84677 1.38036 1.96390 0.76976 0.82680 1.20403 1.22932 0.79687 0.80056 0.88884 0.89338 0.92439 0.90309 0.90954 0.92651 0.75775 0.90969 0.92478 0.89507 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.18 12.88 -148.98 -1.92 -3.10 16 2 C -0.06 0.15 2.80 71.24 0.20 0.35 16 3 Si 0.73 0.23 30.83 68.60 2.11 2.34 16 4 C -0.16 0.33 4.78 -19.81 -0.09 0.23 16 5 C -0.02 0.16 9.66 22.26 0.21 0.38 16 6 C -0.18 1.21 9.04 22.36 0.20 1.41 16 7 C 0.13 0.10 6.69 22.52 0.15 0.25 16 8 O -0.32 -0.44 9.54 -92.96 -0.89 -1.32 16 9 C 0.05 -0.36 4.12 71.98 0.30 -0.07 16 10 C -0.09 0.41 2.43 -10.79 -0.03 0.38 16 11 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 12 C -0.11 0.34 5.10 30.60 0.16 0.50 16 13 C -0.15 0.28 5.54 30.59 0.17 0.45 16 14 C 0.10 -0.18 3.47 30.59 0.11 -0.07 16 15 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 16 O -0.59 -1.03 13.32 -148.98 -1.98 -3.01 16 17 C -0.12 0.27 5.57 30.59 0.17 0.44 16 18 C -0.10 0.73 5.20 30.60 0.16 0.89 16 19 C 0.00 0.02 7.32 22.49 0.16 0.18 16 20 F -0.14 -1.71 17.03 44.97 0.77 -0.95 16 21 C 0.08 0.34 6.61 22.40 0.15 0.49 16 22 F -0.13 -1.03 12.50 44.97 0.56 -0.47 16 23 H 0.38 -0.19 8.38 -74.06 -0.62 -0.81 16 24 H 0.16 -1.30 7.77 -2.38 -0.02 -1.32 16 25 H -0.28 -2.05 5.29 99.48 0.53 -1.53 16 26 H -0.30 -2.20 7.11 99.48 0.71 -1.49 16 27 H 0.19 -2.74 8.00 -2.91 -0.02 -2.76 16 28 H 0.18 -2.49 6.30 -2.91 -0.02 -2.51 16 29 H 0.09 -1.03 7.66 -2.39 -0.02 -1.05 16 30 H 0.09 -0.90 7.66 -2.39 -0.02 -0.92 16 31 H 0.06 0.04 7.82 -2.39 -0.02 0.02 16 32 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.39 -2.30 9.08 -74.05 -0.67 -2.97 16 36 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 Total: 0.00 -19.22 322.76 0.32 -18.90 By element: Atomic # 1 Polarization: -17.87 SS G_CDS: -0.35 Total: -18.22 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 2.02 Total: 5.82 kcal Atomic # 8 Polarization: -2.64 SS G_CDS: -4.79 Total: -7.43 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 1.33 Total: -1.41 kcal Atomic # 14 Polarization: 0.23 SS G_CDS: 2.11 Total: 2.34 kcal Total: -19.22 0.32 -18.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13025868_16737254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.301 kcal (2) G-P(sol) polarization free energy of solvation -19.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds