Wall clock time and date at job start Tue Mar 9 2021 14:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35958 * 116.99807 * 180.02562 * 12 11 10 14 14 C 1.38662 * 120.04669 * 0.02562 * 13 12 11 15 15 C 1.38219 * 120.01125 * 180.02562 * 14 13 12 16 16 C 1.38215 * 120.11317 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.94941 * 179.97438 * 16 15 14 18 18 O 1.42889 * 109.47239 * 254.99923 * 17 16 15 19 19 Si 1.86302 * 109.47045 * 134.99740 * 17 16 15 20 20 H 1.48503 * 109.46887 * 59.99861 * 19 17 16 21 21 H 1.48498 * 109.47352 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47201 * 300.00116 * 19 17 16 23 23 C 1.38495 * 120.09704 * 359.97438 * 16 15 14 24 24 F 1.35099 * 120.00333 * 180.02562 * 23 16 15 25 25 C 1.38499 * 119.98555 * 359.72974 * 23 16 15 26 26 F 1.35101 * 120.05269 * 180.27561 * 25 23 16 27 27 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 28 28 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 29 29 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 32 32 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 33 33 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 34 34 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 35 35 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 36 36 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 37 37 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 38 38 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 39 39 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 40 40 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 41 41 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 42 42 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 43 43 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 44 44 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 45 45 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 46 46 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 47 47 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 48 48 H 1.07994 * 119.99591 * 0.02562 * 14 13 12 49 49 H 1.07992 * 119.94355 * 180.02562 * 15 14 13 50 50 H 1.09001 * 109.47310 * 14.99952 * 17 16 15 51 51 H 0.96704 * 114.00499 * 300.00170 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6979 -7.6070 4.6630 14 6 2.4928 -7.1879 5.7190 15 6 2.8077 -8.0666 6.7384 16 6 2.3311 -9.3636 6.7079 17 6 2.6772 -10.3187 7.8210 18 8 3.6636 -11.2458 7.3637 19 14 1.1475 -11.2459 8.3418 20 1 0.6123 -12.0074 7.1846 21 1 1.4886 -12.1875 9.4382 22 1 0.1224 -10.2824 8.8171 23 6 1.5359 -9.7867 5.6559 24 9 1.0706 -11.0548 5.6283 25 6 1.2128 -8.9079 4.6354 26 9 0.4326 -9.3176 3.6114 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 1.8938 -0.5134 3.9323 37 1 1.8934 1.0279 3.0423 38 1 0.4400 0.0002 3.0423 39 1 4.3777 -1.3911 0.6315 40 1 4.3770 0.1503 1.5217 41 1 4.3774 -1.3909 2.4118 42 1 1.6655 -2.7116 3.5652 43 1 3.1185 -3.2254 2.6746 44 1 1.8274 -5.0693 1.6337 45 1 0.3749 -4.5551 2.5246 46 1 3.0051 -5.4633 3.7796 47 1 1.5528 -4.9492 4.6711 48 1 2.8659 -6.1748 5.7450 49 1 3.4265 -7.7389 7.5606 50 1 3.0700 -9.7598 8.6704 51 1 3.3819 -11.7789 6.6076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13025868_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:26:22 Heat of formation + Delta-G solvation = -224.987882 kcal Electronic energy + Delta-G solvation = -30411.831381 eV Core-core repulsion = 25878.426451 eV Total energy + Delta-G solvation = -4533.404930 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.83874 -49.79970 -41.29399 -39.30124 -38.17757 -37.27675 -36.82246 -33.66659 -31.74467 -31.54143 -29.35613 -29.04236 -27.83736 -27.36901 -27.35441 -26.04597 -24.27129 -23.13633 -22.26476 -20.42086 -19.87026 -19.13203 -18.57315 -18.00354 -17.73241 -17.69230 -17.45661 -17.21316 -16.48411 -16.20169 -15.95560 -15.91158 -15.84633 -15.55747 -15.35815 -15.09328 -14.85625 -14.71820 -14.66959 -14.02740 -13.97782 -13.92024 -13.64821 -13.44269 -13.36153 -13.23811 -13.14712 -12.95456 -12.93419 -12.89586 -12.77046 -12.45455 -12.37958 -12.20348 -12.14812 -11.85587 -11.69635 -11.67100 -11.35740 -11.32645 -11.26871 -10.55568 -10.27947 -10.04459 -9.97146 -9.40780 -0.30099 -0.15392 1.13448 1.39902 1.42988 1.47607 1.78949 1.85292 1.93322 2.16122 2.20587 2.50322 2.77013 3.13088 3.36612 3.55159 3.60783 3.83424 3.90071 3.90866 4.02220 4.12261 4.12859 4.15674 4.37805 4.39055 4.45134 4.46583 4.50539 4.57908 4.77221 4.77920 4.80703 4.82544 4.82861 4.83684 4.83785 4.92583 5.00193 5.06057 5.06575 5.09283 5.09556 5.10469 5.22258 5.35455 5.41004 5.41840 5.45306 5.57683 5.63820 5.67673 6.11482 6.52832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.388 4.388 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.320 2.680 6 C -0.517 4.517 7 C -0.517 4.517 8 O -0.644 6.644 9 C 0.081 3.919 10 C -0.125 4.125 11 C 0.049 3.951 12 O -0.324 6.324 13 C 0.126 3.874 14 C -0.178 4.178 15 C -0.023 4.023 16 C -0.166 4.166 17 C -0.059 4.059 18 O -0.545 6.545 19 Si 0.947 3.053 20 H -0.255 1.255 21 H -0.267 1.267 22 H -0.260 1.260 23 C 0.083 3.917 24 F -0.124 7.124 25 C 0.002 3.998 26 F -0.141 7.141 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.185 0.815 49 H 0.188 0.812 50 H 0.155 0.845 51 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 5.798 4.433 8.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.430 4.430 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.450 2.550 6 C -0.619 4.619 7 C -0.619 4.619 8 O -0.603 6.603 9 C 0.005 3.995 10 C -0.162 4.162 11 C -0.025 4.025 12 O -0.238 6.238 13 C 0.078 3.922 14 C -0.197 4.197 15 C -0.041 4.041 16 C -0.167 4.167 17 C -0.170 4.170 18 O -0.351 6.351 19 Si 0.772 3.228 20 H -0.179 1.179 21 H -0.192 1.192 22 H -0.184 1.184 23 C 0.062 3.938 24 F -0.103 7.103 25 C -0.019 4.019 26 F -0.120 7.120 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.202 0.798 49 H 0.205 0.795 50 H 0.173 0.827 51 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.539 5.336 4.782 7.992 hybrid contribution -0.459 -0.047 -1.296 1.376 sum 3.080 5.290 3.486 7.044 Atomic orbital electron populations 1.21541 0.94468 1.01633 1.01786 1.26019 1.00278 1.03171 1.13552 1.21599 1.01322 0.94668 1.02150 1.21542 1.01060 0.99921 0.96909 0.76115 0.62601 0.52488 0.63830 1.27078 1.06774 1.09870 1.18149 1.27081 1.24991 1.05079 1.04737 1.85326 1.79784 1.46783 1.48439 1.22023 0.99379 0.90582 0.87488 1.21513 1.02715 0.94133 0.97871 1.23132 1.00329 0.78483 1.00555 1.86117 1.71171 1.23627 1.42886 1.18877 0.95428 0.87834 0.90034 1.21722 1.00826 1.03737 0.93383 1.21292 0.94971 0.89457 0.98395 1.20340 1.00948 0.98812 0.96624 1.24772 1.02019 0.92803 0.97448 1.86514 1.41421 1.53440 1.53765 0.85974 0.76604 0.80746 0.79428 1.17900 1.19208 1.18360 1.17548 0.99966 0.79628 0.96624 1.91579 1.87099 1.35794 1.95827 1.17189 1.02320 0.92965 0.89403 1.91483 1.72693 1.90718 1.57134 0.91978 0.93586 0.92710 0.91701 0.93412 0.91693 0.92707 0.93591 0.91981 0.90434 0.90433 0.91339 0.91348 0.90431 0.90443 0.90288 0.90311 0.90938 0.90903 0.88682 0.88595 0.79755 0.79507 0.82722 0.76712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.03 7.85 71.98 0.56 0.53 16 2 C -0.39 0.48 0.53 -10.79 -0.01 0.48 16 3 C -0.14 0.30 7.85 71.98 0.56 0.86 16 4 C -0.14 -0.03 7.85 71.98 0.56 0.53 16 5 Si 1.32 -6.11 8.45 68.60 0.58 -5.53 16 6 C -0.52 2.49 8.50 113.37 0.96 3.45 16 7 C -0.52 2.46 8.50 113.37 0.96 3.42 16 8 O -0.64 1.19 8.56 -148.98 -1.28 -0.09 16 9 C 0.08 -0.52 5.12 71.98 0.37 -0.15 16 10 C -0.12 0.48 5.95 30.59 0.18 0.66 16 11 C 0.05 -0.32 4.74 71.98 0.34 0.02 16 12 O -0.32 -0.73 10.00 -93.08 -0.93 -1.66 16 13 C 0.13 0.18 6.69 22.52 0.15 0.33 16 14 C -0.18 1.17 9.04 22.37 0.20 1.37 16 15 C -0.02 0.17 9.66 22.26 0.21 0.38 16 16 C -0.17 0.30 4.78 -19.81 -0.09 0.20 16 17 C -0.06 0.19 2.81 71.24 0.20 0.39 16 18 O -0.54 0.18 12.88 -148.98 -1.92 -1.74 16 19 Si 0.95 0.87 26.09 68.60 1.79 2.66 16 20 H -0.25 -1.22 5.29 99.48 0.53 -0.70 16 21 H -0.27 -0.89 7.11 99.48 0.71 -0.18 16 22 H -0.26 -0.60 7.11 99.48 0.71 0.11 16 23 C 0.08 0.34 6.62 22.39 0.15 0.49 16 24 F -0.12 -0.86 12.51 44.97 0.56 -0.29 16 25 C 0.00 0.01 7.32 22.48 0.16 0.18 16 26 F -0.14 -1.74 17.03 44.97 0.77 -0.98 16 27 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 28 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.05 0.06 7.96 -2.38 -0.02 0.04 16 30 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 31 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16 32 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 33 H 0.05 0.06 7.96 -2.39 -0.02 0.05 16 34 H 0.04 0.07 8.14 -2.38 -0.02 0.05 16 35 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 36 H 0.08 -0.53 7.48 -2.39 -0.02 -0.55 16 37 H 0.08 -0.39 7.79 -2.38 -0.02 -0.41 16 38 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 39 H 0.07 -0.23 7.79 -2.39 -0.02 -0.25 16 40 H 0.08 -0.39 7.79 -2.39 -0.02 -0.41 16 41 H 0.08 -0.53 7.48 -2.38 -0.02 -0.55 16 42 H 0.08 -0.84 7.21 -2.39 -0.02 -0.86 16 43 H 0.08 -0.83 7.21 -2.39 -0.02 -0.85 16 44 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 46 H 0.10 -1.08 7.66 -2.39 -0.02 -1.10 16 47 H 0.10 -1.11 7.66 -2.39 -0.02 -1.13 16 48 H 0.19 -2.60 6.30 -2.91 -0.02 -2.62 16 49 H 0.19 -2.76 8.00 -2.91 -0.02 -2.79 16 50 H 0.16 -1.41 7.77 -2.39 -0.02 -1.43 16 51 H 0.38 -1.45 8.42 -74.05 -0.62 -2.07 16 Total: 0.00 -17.27 412.98 5.93 -11.34 By element: Atomic # 1 Polarization: -17.71 SS G_CDS: 0.87 Total: -16.85 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 5.49 Total: 13.14 kcal Atomic # 8 Polarization: 0.64 SS G_CDS: -4.12 Total: -3.49 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 1.33 Total: -1.27 kcal Atomic # 14 Polarization: -5.24 SS G_CDS: 2.37 Total: -2.87 kcal Total: -17.27 5.93 -11.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13025868_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.649 kcal (2) G-P(sol) polarization free energy of solvation -17.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds