Wall clock time and date at job start Tue Mar 9 2021 14:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38121 * 119.97404 * 2 1 4 4 C 1.38752 * 119.94891 * 179.97438 * 3 2 1 5 5 O 1.35896 * 120.05890 * 180.02562 * 4 3 2 6 6 C 1.42901 * 117.00083 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47050 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.47496 * 64.99648 * 7 6 5 9 9 Si 1.63098 * 114.00344 * 179.97438 * 8 7 6 10 10 C 1.86297 * 109.47161 * 300.00447 * 9 8 7 11 11 C 1.86306 * 109.46806 * 60.00114 * 9 8 7 12 12 C 1.86294 * 109.47468 * 180.02562 * 9 8 7 13 13 C 1.53004 * 109.46954 * 59.99842 * 12 9 8 14 14 C 1.52991 * 109.47719 * 180.02562 * 12 9 8 15 15 C 1.53002 * 109.47156 * 300.00390 * 12 9 8 16 16 C 1.38717 * 119.88597 * 359.72795 * 4 3 2 17 17 C 1.38163 * 119.94349 * 0.50633 * 16 4 3 18 18 C 1.38251 * 120.05527 * 359.50941 * 17 16 4 19 19 C 1.50695 * 119.94233 * 180.25730 * 18 17 16 20 20 O 1.42900 * 109.47207 * 105.00432 * 19 18 17 21 21 Si 1.86298 * 109.47528 * 345.00183 * 19 18 17 22 22 H 1.48505 * 109.47145 * 59.99891 * 21 19 18 23 23 H 1.48492 * 109.47422 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46937 * 300.00363 * 21 19 18 25 25 H 1.08998 * 109.47220 * 270.02008 * 1 2 3 26 26 H 1.08995 * 109.47386 * 30.02488 * 1 2 3 27 27 H 1.09009 * 109.46901 * 150.02351 * 1 2 3 28 28 H 1.07997 * 120.02529 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46832 * 299.99699 * 6 5 4 30 30 H 1.08998 * 109.47360 * 59.99984 * 6 5 4 31 31 H 1.08998 * 109.47311 * 184.99864 * 7 6 5 32 32 H 1.09002 * 109.47002 * 304.99917 * 7 6 5 33 33 H 1.09003 * 109.47541 * 59.99926 * 10 9 8 34 34 H 1.09003 * 109.47345 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47286 * 299.99706 * 10 9 8 36 36 H 1.08995 * 109.47075 * 60.00017 * 11 9 8 37 37 H 1.09003 * 109.46706 * 180.02562 * 11 9 8 38 38 H 1.08994 * 109.47027 * 299.99698 * 11 9 8 39 39 H 1.09009 * 109.46932 * 60.00252 * 13 12 9 40 40 H 1.09002 * 109.47235 * 179.97438 * 13 12 9 41 41 H 1.08995 * 109.47230 * 300.00483 * 13 12 9 42 42 H 1.09002 * 109.47114 * 60.00054 * 14 12 9 43 43 H 1.08994 * 109.47771 * 180.02562 * 14 12 9 44 44 H 1.09004 * 109.47377 * 300.00859 * 14 12 9 45 45 H 1.09009 * 109.47074 * 60.00081 * 15 12 9 46 46 H 1.09003 * 109.47420 * 179.97438 * 15 12 9 47 47 H 1.08996 * 109.47151 * 300.00075 * 15 12 9 48 48 H 1.07998 * 120.02558 * 180.27526 * 16 4 3 49 49 H 1.08002 * 119.97507 * 179.79516 * 17 16 4 50 50 H 1.08999 * 109.47024 * 224.99985 * 19 18 17 51 51 H 0.96697 * 113.99762 * 299.99830 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5845 1.1959 0.0005 5 8 4.2657 2.3718 0.0011 6 6 5.6927 2.2949 0.0010 7 6 6.2795 3.7079 0.0023 8 8 5.9363 4.3652 1.2239 9 14 6.5102 5.8873 1.3423 10 6 8.3700 5.8597 1.2365 11 6 5.8243 6.9194 -0.0489 12 6 5.9925 6.6211 2.9744 13 6 6.5562 5.7732 4.1165 14 6 6.5302 8.0491 3.0853 15 6 4.4651 6.6436 3.0619 16 6 4.2752 -0.0071 0.0068 17 6 3.5804 -1.2013 0.0019 18 6 2.1978 -1.1980 0.0010 19 6 1.4425 -2.5020 0.0015 20 8 0.9011 -2.7383 1.3027 21 14 2.5996 -3.8901 -0.4513 22 1 3.7037 -3.9573 0.5395 23 1 1.8554 -5.1751 -0.4501 24 1 3.1622 -3.6444 -1.8034 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3633 -0.8903 -0.5135 28 1 1.6570 2.1318 -0.0004 29 1 6.0278 1.7619 0.8908 30 1 6.0279 1.7627 -0.8892 31 1 7.3643 3.6509 -0.0873 32 1 5.8745 4.2702 -0.8390 33 1 8.6733 5.4303 0.2816 34 1 8.7536 6.8769 1.3160 35 1 8.7713 5.2558 2.0503 36 1 4.7363 6.9355 0.0130 37 1 6.2082 7.9365 0.0300 38 1 6.1277 6.4900 -1.0036 39 1 7.6444 5.7571 4.0542 40 1 6.2537 6.2028 5.0716 41 1 6.1727 4.7560 4.0374 42 1 6.1282 8.6529 2.2716 43 1 6.2277 8.4783 4.0404 44 1 7.6184 8.0335 3.0227 45 1 4.0816 5.6263 2.9829 46 1 4.1621 7.0726 4.0171 47 1 4.0635 7.2476 2.2483 48 1 5.3552 -0.0102 0.0117 49 1 4.1176 -2.1382 0.0034 50 1 0.6321 -2.4527 -0.7257 51 1 1.5671 -2.7941 2.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13420936_10264010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:05 Heat of formation + Delta-G solvation = -154.229651 kcal Electronic energy + Delta-G solvation = -26217.135840 eV Core-core repulsion = 22625.707169 eV Total energy + Delta-G solvation = -3591.428671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.187 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.29479 -39.48886 -37.90883 -36.99850 -36.84224 -33.52343 -32.27929 -30.55190 -29.41566 -29.11544 -28.09969 -27.87291 -27.39812 -26.13346 -24.28771 -22.98674 -21.56828 -20.42756 -18.91445 -18.32063 -18.11575 -17.23652 -16.70051 -16.54862 -16.14823 -15.94372 -15.86256 -15.41754 -15.18984 -14.92254 -14.87502 -14.72228 -14.30295 -14.18976 -14.06671 -13.88007 -13.61862 -13.57543 -13.45742 -13.28194 -13.04353 -12.97225 -12.95321 -12.92745 -12.77359 -12.41938 -12.26924 -12.13154 -11.98911 -11.88182 -11.72588 -11.70422 -11.57790 -11.43480 -11.31022 -10.40975 -10.32980 -10.09078 -9.71949 -9.06435 0.37437 0.40612 1.18839 1.39838 1.42384 1.54262 1.70737 1.93049 2.01941 2.18801 2.39580 2.72355 3.54212 3.68653 3.81115 3.90347 3.94211 3.96379 4.10393 4.11058 4.13662 4.19191 4.25120 4.37801 4.43856 4.46586 4.57132 4.62368 4.66510 4.68226 4.69613 4.72318 4.77004 4.79722 4.85180 4.87788 4.99166 5.05471 5.09651 5.10383 5.15162 5.17056 5.30843 5.33546 5.34259 5.39521 5.40550 5.48805 5.50375 5.57750 5.67558 5.82316 6.48652 6.60471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.015 4.015 3 C -0.154 4.154 4 C 0.143 3.857 5 O -0.302 6.302 6 C 0.056 3.944 7 C 0.087 3.913 8 O -0.619 6.619 9 Si 1.286 2.714 10 C -0.512 4.512 11 C -0.511 4.511 12 C -0.374 4.374 13 C -0.134 4.134 14 C -0.137 4.137 15 C -0.134 4.134 16 C -0.213 4.213 17 C -0.082 4.082 18 C -0.163 4.163 19 C -0.073 4.073 20 O -0.538 6.538 21 Si 0.947 3.053 22 H -0.253 1.253 23 H -0.254 1.254 24 H -0.250 1.250 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.130 0.870 49 H 0.124 0.876 50 H 0.116 0.884 51 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 0.123 -1.249 2.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.015 4.015 3 C -0.173 4.173 4 C 0.098 3.902 5 O -0.215 6.215 6 C -0.019 4.019 7 C 0.011 3.989 8 O -0.578 6.578 9 Si 1.418 2.582 10 C -0.614 4.614 11 C -0.612 4.612 12 C -0.418 4.418 13 C -0.191 4.191 14 C -0.194 4.194 15 C -0.191 4.191 16 C -0.232 4.232 17 C -0.100 4.100 18 C -0.164 4.164 19 C -0.184 4.184 20 O -0.343 6.343 21 Si 0.770 3.230 22 H -0.178 1.178 23 H -0.178 1.178 24 H -0.174 1.174 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.147 0.853 49 H 0.142 0.858 50 H 0.134 0.866 51 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.237 -0.543 -1.675 2.847 hybrid contribution 0.859 0.790 0.313 1.208 sum 3.095 0.247 -1.362 3.391 Atomic orbital electron populations 1.20863 0.90279 1.02932 1.03214 1.19538 0.96275 0.91140 0.94572 1.20353 0.90887 0.98739 1.07327 1.19025 0.91804 0.84680 0.94722 1.86146 1.19642 1.27671 1.88087 1.23015 0.79003 0.97644 1.02242 1.22084 0.98463 0.92426 0.85936 1.85408 1.81105 1.50738 1.40517 0.76737 0.62716 0.53533 0.65255 1.27049 1.25075 1.04872 1.04375 1.27025 1.07669 1.11183 1.15368 1.25770 1.00025 1.01155 1.14803 1.21512 1.00310 0.99563 0.97714 1.21555 1.00593 0.95005 1.02223 1.21509 0.93733 1.02086 1.01786 1.21146 1.00249 0.91946 1.09847 1.20874 0.93522 0.97858 0.97752 1.20005 0.93394 0.95591 1.07384 1.24859 1.04663 0.99646 0.89249 1.86510 1.37061 1.94547 1.16157 0.85747 0.78030 0.78058 0.81141 1.17762 1.17833 1.17393 0.90235 0.91481 0.90810 0.84921 0.90714 0.90646 0.90447 0.91418 0.91521 0.90628 0.90857 0.90754 0.90758 0.91525 0.92751 0.92788 0.92183 0.92510 0.92498 0.92559 0.92067 0.92832 0.92702 0.85260 0.85829 0.86623 0.77793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.02 9.54 36.00 0.34 0.33 16 2 C -0.01 -0.02 5.88 -104.65 -0.62 -0.64 16 3 C -0.15 -0.34 9.64 -39.43 -0.38 -0.72 16 4 C 0.14 0.34 6.69 -39.21 -0.26 0.08 16 5 O -0.30 -0.71 10.10 -24.26 -0.25 -0.96 16 6 C 0.06 -0.04 5.12 37.16 0.19 0.15 16 7 C 0.09 -0.11 5.51 37.16 0.20 0.10 16 8 O -0.62 -0.28 8.52 -40.08 -0.34 -0.62 16 9 Si 1.29 -1.38 8.45 -169.99 -1.44 -2.82 16 10 C -0.51 0.60 8.50 101.05 0.86 1.46 16 11 C -0.51 0.29 8.50 101.05 0.86 1.15 16 12 C -0.37 0.04 0.53 -90.62 -0.05 -0.01 16 13 C -0.13 -0.03 7.85 37.16 0.29 0.26 16 14 C -0.14 0.07 7.85 37.15 0.29 0.36 16 15 C -0.13 -0.08 7.84 37.16 0.29 0.22 16 16 C -0.21 -0.24 9.04 -39.43 -0.36 -0.60 16 17 C -0.08 -0.08 8.65 -39.60 -0.34 -0.42 16 18 C -0.16 -0.19 5.26 -104.60 -0.55 -0.74 16 19 C -0.07 0.00 2.04 36.00 0.07 0.08 16 20 O -0.54 -0.26 12.81 -35.23 -0.45 -0.71 16 21 Si 0.95 -0.28 25.49 -169.99 -4.33 -4.61 16 22 H -0.25 0.09 6.73 56.52 0.38 0.47 16 23 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 24 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 25 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.07 -0.05 8.08 -51.93 -0.42 -0.47 16 27 H 0.07 -0.02 6.23 -51.92 -0.32 -0.35 16 28 H 0.13 0.19 8.06 -52.49 -0.42 -0.24 16 29 H 0.07 -0.08 7.65 -51.93 -0.40 -0.48 16 30 H 0.08 -0.20 7.68 -51.93 -0.40 -0.60 16 31 H 0.08 -0.29 7.21 -51.93 -0.37 -0.67 16 32 H 0.07 -0.14 7.21 -51.93 -0.37 -0.51 16 33 H 0.07 -0.12 7.48 -51.93 -0.39 -0.51 16 34 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 35 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 36 H 0.07 0.01 7.79 -51.93 -0.40 -0.40 16 37 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 38 H 0.07 -0.07 7.48 -51.93 -0.39 -0.45 16 39 H 0.05 -0.03 7.79 -51.92 -0.40 -0.43 16 40 H 0.05 0.03 8.14 -51.93 -0.42 -0.40 16 41 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 42 H 0.06 -0.06 7.79 -51.93 -0.40 -0.47 16 43 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 45 H 0.06 0.07 7.97 -51.92 -0.41 -0.34 16 46 H 0.05 0.04 8.14 -51.93 -0.42 -0.38 16 47 H 0.05 0.00 7.80 -51.93 -0.40 -0.40 16 48 H 0.13 -0.12 6.30 -52.49 -0.33 -0.45 16 49 H 0.12 -0.07 4.88 -52.49 -0.26 -0.32 16 50 H 0.12 -0.09 6.49 -51.93 -0.34 -0.43 16 51 H 0.38 -0.91 8.70 45.56 0.40 -0.51 16 LS Contribution 399.02 15.07 6.01 6.01 Total: 0.00 -5.19 399.02 -8.53 -13.73 By element: Atomic # 1 Polarization: -2.48 SS G_CDS: -8.59 Total: -11.07 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 0.85 Total: 1.05 kcal Atomic # 8 Polarization: -1.25 SS G_CDS: -1.04 Total: -2.29 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: -5.77 Total: -7.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -5.19 -8.53 -13.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13420936_10264010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.504 kcal (2) G-P(sol) polarization free energy of solvation -5.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds