Wall clock time and date at job start Tue Mar 9 2021 14:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38121 * 119.97404 * 2 1 4 4 C 1.38752 * 119.94891 * 179.97438 * 3 2 1 5 5 O 1.35896 * 120.05890 * 180.02562 * 4 3 2 6 6 C 1.42901 * 117.00083 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47050 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.47496 * 64.99648 * 7 6 5 9 9 Si 1.63098 * 114.00344 * 179.97438 * 8 7 6 10 10 C 1.86297 * 109.47161 * 300.00447 * 9 8 7 11 11 C 1.86306 * 109.46806 * 60.00114 * 9 8 7 12 12 C 1.86294 * 109.47468 * 180.02562 * 9 8 7 13 13 C 1.53004 * 109.46954 * 59.99842 * 12 9 8 14 14 C 1.52991 * 109.47719 * 180.02562 * 12 9 8 15 15 C 1.53002 * 109.47156 * 300.00390 * 12 9 8 16 16 C 1.38717 * 119.88597 * 359.72795 * 4 3 2 17 17 C 1.38163 * 119.94349 * 0.50633 * 16 4 3 18 18 C 1.38251 * 120.05527 * 359.50941 * 17 16 4 19 19 C 1.50695 * 119.94233 * 180.25730 * 18 17 16 20 20 O 1.42900 * 109.47207 * 105.00432 * 19 18 17 21 21 Si 1.86298 * 109.47528 * 345.00183 * 19 18 17 22 22 H 1.48505 * 109.47145 * 59.99891 * 21 19 18 23 23 H 1.48492 * 109.47422 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46937 * 300.00363 * 21 19 18 25 25 H 1.08998 * 109.47220 * 270.02008 * 1 2 3 26 26 H 1.08995 * 109.47386 * 30.02488 * 1 2 3 27 27 H 1.09009 * 109.46901 * 150.02351 * 1 2 3 28 28 H 1.07997 * 120.02529 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46832 * 299.99699 * 6 5 4 30 30 H 1.08998 * 109.47360 * 59.99984 * 6 5 4 31 31 H 1.08998 * 109.47311 * 184.99864 * 7 6 5 32 32 H 1.09002 * 109.47002 * 304.99917 * 7 6 5 33 33 H 1.09003 * 109.47541 * 59.99926 * 10 9 8 34 34 H 1.09003 * 109.47345 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47286 * 299.99706 * 10 9 8 36 36 H 1.08995 * 109.47075 * 60.00017 * 11 9 8 37 37 H 1.09003 * 109.46706 * 180.02562 * 11 9 8 38 38 H 1.08994 * 109.47027 * 299.99698 * 11 9 8 39 39 H 1.09009 * 109.46932 * 60.00252 * 13 12 9 40 40 H 1.09002 * 109.47235 * 179.97438 * 13 12 9 41 41 H 1.08995 * 109.47230 * 300.00483 * 13 12 9 42 42 H 1.09002 * 109.47114 * 60.00054 * 14 12 9 43 43 H 1.08994 * 109.47771 * 180.02562 * 14 12 9 44 44 H 1.09004 * 109.47377 * 300.00859 * 14 12 9 45 45 H 1.09009 * 109.47074 * 60.00081 * 15 12 9 46 46 H 1.09003 * 109.47420 * 179.97438 * 15 12 9 47 47 H 1.08996 * 109.47151 * 300.00075 * 15 12 9 48 48 H 1.07998 * 120.02558 * 180.27526 * 16 4 3 49 49 H 1.08002 * 119.97507 * 179.79516 * 17 16 4 50 50 H 1.08999 * 109.47024 * 224.99985 * 19 18 17 51 51 H 0.96697 * 113.99762 * 299.99830 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5845 1.1959 0.0005 5 8 4.2657 2.3718 0.0011 6 6 5.6927 2.2949 0.0010 7 6 6.2795 3.7079 0.0023 8 8 5.9363 4.3652 1.2239 9 14 6.5102 5.8873 1.3423 10 6 8.3700 5.8597 1.2365 11 6 5.8243 6.9194 -0.0489 12 6 5.9925 6.6211 2.9744 13 6 6.5562 5.7732 4.1165 14 6 6.5302 8.0491 3.0853 15 6 4.4651 6.6436 3.0619 16 6 4.2752 -0.0071 0.0068 17 6 3.5804 -1.2013 0.0019 18 6 2.1978 -1.1980 0.0010 19 6 1.4425 -2.5020 0.0015 20 8 0.9011 -2.7383 1.3027 21 14 2.5996 -3.8901 -0.4513 22 1 3.7037 -3.9573 0.5395 23 1 1.8554 -5.1751 -0.4501 24 1 3.1622 -3.6444 -1.8034 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3633 -0.8903 -0.5135 28 1 1.6570 2.1318 -0.0004 29 1 6.0278 1.7619 0.8908 30 1 6.0279 1.7627 -0.8892 31 1 7.3643 3.6509 -0.0873 32 1 5.8745 4.2702 -0.8390 33 1 8.6733 5.4303 0.2816 34 1 8.7536 6.8769 1.3160 35 1 8.7713 5.2558 2.0503 36 1 4.7363 6.9355 0.0130 37 1 6.2082 7.9365 0.0300 38 1 6.1277 6.4900 -1.0036 39 1 7.6444 5.7571 4.0542 40 1 6.2537 6.2028 5.0716 41 1 6.1727 4.7560 4.0374 42 1 6.1282 8.6529 2.2716 43 1 6.2277 8.4783 4.0404 44 1 7.6184 8.0335 3.0227 45 1 4.0816 5.6263 2.9829 46 1 4.1621 7.0726 4.0171 47 1 4.0635 7.2476 2.2483 48 1 5.3552 -0.0102 0.0117 49 1 4.1176 -2.1382 0.0034 50 1 0.6321 -2.4527 -0.7257 51 1 1.5671 -2.7941 2.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13420936_10264010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:04 Heat of formation + Delta-G solvation = -145.938824 kcal Electronic energy + Delta-G solvation = -26216.776323 eV Core-core repulsion = 22625.707169 eV Total energy + Delta-G solvation = -3591.069154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33394 -39.49467 -37.85228 -37.00713 -36.83232 -33.56111 -32.29042 -30.49968 -29.33061 -29.06624 -28.11938 -27.84330 -27.38845 -26.15199 -24.22205 -23.01943 -21.58159 -20.41756 -18.93309 -18.32304 -18.03480 -17.26823 -16.71073 -16.52127 -16.11287 -15.91445 -15.85401 -15.39371 -15.16592 -14.93837 -14.85655 -14.73669 -14.32090 -14.22110 -14.02598 -13.85327 -13.59756 -13.52596 -13.37110 -13.18119 -13.02538 -12.96890 -12.95453 -12.92687 -12.70719 -12.41328 -12.25432 -12.16812 -11.95594 -11.86201 -11.72059 -11.69622 -11.53398 -11.41723 -11.24204 -10.32645 -10.31772 -10.05888 -9.79320 -9.13023 0.30271 0.33136 1.21076 1.44777 1.52501 1.55122 1.78200 1.92936 2.13380 2.21938 2.47714 2.65402 3.59632 3.69949 3.84830 3.90112 4.00854 4.09580 4.11519 4.12791 4.20217 4.29964 4.32966 4.41681 4.45882 4.46885 4.65567 4.67044 4.74073 4.75818 4.78568 4.78923 4.79859 4.81303 4.82382 4.86776 4.98855 5.01121 5.08121 5.08364 5.13790 5.19331 5.29963 5.33079 5.33467 5.39608 5.42485 5.48737 5.59277 5.62014 5.64582 5.79105 6.45856 6.74561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.025 4.025 3 C -0.172 4.172 4 C 0.130 3.870 5 O -0.322 6.322 6 C 0.047 3.953 7 C 0.075 3.925 8 O -0.639 6.639 9 Si 1.315 2.685 10 C -0.514 4.514 11 C -0.519 4.519 12 C -0.384 4.384 13 C -0.136 4.136 14 C -0.140 4.140 15 C -0.136 4.136 16 C -0.217 4.217 17 C -0.088 4.088 18 C -0.169 4.169 19 C -0.074 4.074 20 O -0.551 6.551 21 Si 0.981 3.019 22 H -0.249 1.249 23 H -0.275 1.275 24 H -0.260 1.260 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.047 0.953 47 H 0.058 0.942 48 H 0.149 0.851 49 H 0.139 0.861 50 H 0.121 0.879 51 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -0.197 -1.752 4.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.025 4.025 3 C -0.191 4.191 4 C 0.084 3.916 5 O -0.235 6.235 6 C -0.028 4.028 7 C 0.000 4.000 8 O -0.599 6.599 9 Si 1.445 2.555 10 C -0.616 4.616 11 C -0.620 4.620 12 C -0.426 4.426 13 C -0.193 4.193 14 C -0.197 4.197 15 C -0.193 4.193 16 C -0.235 4.235 17 C -0.106 4.106 18 C -0.169 4.169 19 C -0.184 4.184 20 O -0.357 6.357 21 Si 0.805 3.195 22 H -0.173 1.173 23 H -0.201 1.201 24 H -0.184 1.184 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.149 0.851 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.167 0.833 49 H 0.156 0.844 50 H 0.139 0.861 51 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.414 -0.846 -2.158 4.127 hybrid contribution 0.476 0.894 0.482 1.122 sum 3.890 0.048 -1.676 4.236 Atomic orbital electron populations 1.20870 0.89568 1.03500 1.03184 1.19732 0.96963 0.91199 0.94619 1.20508 0.91354 0.99050 1.08141 1.19201 0.92006 0.85231 0.95182 1.86123 1.21261 1.27974 1.88187 1.23294 0.77625 0.98522 1.03360 1.22371 1.00136 0.92036 0.85476 1.85401 1.81650 1.51422 1.41378 0.76209 0.62737 0.52714 0.63813 1.27039 1.24485 1.05189 1.04923 1.27126 1.07096 1.11712 1.16089 1.25948 0.99308 1.01615 1.15775 1.21531 1.00944 0.99221 0.97597 1.21595 1.01286 0.94738 1.02093 1.21525 0.94646 1.01489 1.01653 1.21396 1.01342 0.91528 1.09270 1.21110 0.93608 0.98470 0.97407 1.20190 0.93737 0.95872 1.07112 1.24933 1.04960 0.99236 0.89268 1.86480 1.38064 1.94499 1.16701 0.85267 0.77353 0.76384 0.80462 1.17270 1.20081 1.18415 0.90495 0.90881 0.90286 0.85095 0.90506 0.88527 0.87670 0.90950 0.90547 0.90336 0.90922 0.91718 0.90386 0.90960 0.91775 0.93453 0.92802 0.91920 0.93222 0.91557 0.93005 0.93375 0.92298 0.83317 0.84383 0.86118 0.76458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.10 9.54 71.23 0.68 0.58 16 2 C -0.02 -0.10 5.88 -19.88 -0.12 -0.21 16 3 C -0.17 -0.97 9.64 22.36 0.22 -0.76 16 4 C 0.13 0.70 6.69 22.51 0.15 0.85 16 5 O -0.32 -1.73 10.10 -87.74 -0.89 -2.62 16 6 C 0.05 -0.08 5.12 71.98 0.37 0.29 16 7 C 0.07 -0.24 5.51 71.98 0.40 0.16 16 8 O -0.64 -0.61 8.52 -144.34 -1.23 -1.84 16 9 Si 1.32 -3.08 8.45 68.60 0.58 -2.50 16 10 C -0.51 1.84 8.50 113.37 0.96 2.80 16 11 C -0.52 0.63 8.50 113.37 0.96 1.59 16 12 C -0.38 -0.12 0.53 -10.79 -0.01 -0.12 16 13 C -0.14 -0.14 7.85 71.98 0.56 0.42 16 14 C -0.14 0.13 7.85 71.98 0.56 0.69 16 15 C -0.14 -0.33 7.84 71.98 0.56 0.24 16 16 C -0.22 -0.45 9.04 22.37 0.20 -0.25 16 17 C -0.09 -0.14 8.65 22.26 0.19 0.06 16 18 C -0.17 -0.41 5.26 -19.85 -0.10 -0.51 16 19 C -0.07 0.01 2.04 71.23 0.15 0.16 16 20 O -0.55 -0.49 12.81 -148.98 -1.91 -2.40 16 21 Si 0.98 -0.93 25.49 68.60 1.75 0.82 16 22 H -0.25 0.46 6.73 99.48 0.67 1.13 16 23 H -0.28 -0.69 7.11 99.48 0.71 0.02 16 24 H -0.26 -0.15 7.11 99.48 0.71 0.56 16 25 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.07 -0.05 8.08 -2.39 -0.02 -0.07 16 27 H 0.08 -0.03 6.23 -2.38 -0.01 -0.04 16 28 H 0.13 0.62 8.06 -2.91 -0.02 0.60 16 29 H 0.08 -0.19 7.65 -2.39 -0.02 -0.21 16 30 H 0.10 -0.63 7.68 -2.39 -0.02 -0.64 16 31 H 0.11 -0.96 7.21 -2.39 -0.02 -0.98 16 32 H 0.07 -0.32 7.21 -2.39 -0.02 -0.34 16 33 H 0.08 -0.41 7.48 -2.39 -0.02 -0.43 16 34 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 35 H 0.07 -0.22 7.79 -2.39 -0.02 -0.24 16 36 H 0.06 0.05 7.79 -2.39 -0.02 0.03 16 37 H 0.08 -0.16 7.79 -2.39 -0.02 -0.18 16 38 H 0.07 -0.18 7.48 -2.39 -0.02 -0.19 16 39 H 0.06 -0.07 7.79 -2.38 -0.02 -0.09 16 40 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.05 0.12 7.96 -2.39 -0.02 0.10 16 42 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 43 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.07 -0.20 7.79 -2.38 -0.02 -0.21 16 45 H 0.05 0.21 7.97 -2.38 -0.02 0.19 16 46 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.06 0.07 7.80 -2.39 -0.02 0.05 16 48 H 0.15 -0.42 6.30 -2.91 -0.02 -0.44 16 49 H 0.14 -0.28 4.88 -2.91 -0.01 -0.30 16 50 H 0.12 -0.20 6.49 -2.39 -0.02 -0.21 16 51 H 0.39 -1.93 8.70 -74.06 -0.64 -2.58 16 Total: 0.00 -12.27 399.02 5.01 -7.25 By element: Atomic # 1 Polarization: -5.64 SS G_CDS: 0.96 Total: -4.68 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.74 Total: 5.97 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: -4.02 Total: -6.86 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: 2.33 Total: -1.68 kcal Total: -12.27 5.01 -7.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13420936_10264010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.684 kcal (2) G-P(sol) polarization free energy of solvation -12.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds