Wall clock time and date at job start Tue Mar 9 2021 14:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38244 * 119.96815 * 2 1 4 4 C 1.50695 * 119.94976 * 0.02562 * 3 2 1 5 5 O 1.42897 * 109.47190 * 74.99824 * 4 3 2 6 6 Si 1.86301 * 109.47324 * 194.99946 * 4 3 2 7 7 C 1.38293 * 120.10761 * 179.97438 * 3 2 1 8 8 C 1.38121 * 120.05866 * 0.02562 * 7 3 2 9 9 C 1.38765 * 119.94256 * 0.02562 * 8 7 3 10 10 O 1.35899 * 120.05572 * 179.97438 * 9 8 7 11 11 C 1.42902 * 117.00050 * 359.97438 * 10 9 8 12 12 C 1.52996 * 109.47137 * 179.97438 * 11 10 9 13 13 H 1.09005 * 112.84599 * 45.33783 * 12 11 10 14 14 C 1.53782 * 113.61466 * 176.52848 * 12 11 10 15 15 C 1.53785 * 87.08121 * 139.98240 * 14 12 11 16 16 H 1.09006 * 113.60892 * 89.11231 * 15 14 12 17 17 O 1.42895 * 113.61945 * 219.93907 * 15 14 12 18 18 C 1.53783 * 113.61711 * 274.14148 * 12 11 10 19 19 C 1.38165 * 119.97293 * 179.72702 * 2 1 3 20 20 H 1.09002 * 109.47152 * 89.99936 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00036 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00017 * 1 2 3 23 23 H 1.09003 * 109.46643 * 315.00102 * 4 3 2 24 24 H 0.96700 * 113.99964 * 60.00006 * 5 4 3 25 25 H 1.48498 * 109.99773 * 179.97438 * 6 4 3 26 26 H 1.48495 * 109.99954 * 301.31693 * 6 4 3 27 27 H 1.08003 * 119.97229 * 180.02562 * 7 3 2 28 28 H 1.07998 * 120.03055 * 180.02562 * 8 7 3 29 29 H 1.08994 * 109.47161 * 300.00566 * 11 10 9 30 30 H 1.09007 * 109.46855 * 60.00299 * 11 10 9 31 31 H 1.08996 * 113.61955 * 254.53519 * 14 12 11 32 32 H 1.09007 * 113.61252 * 25.43779 * 14 12 11 33 33 H 0.96700 * 114.00176 * 180.02562 * 17 15 14 34 34 H 1.08993 * 113.61192 * 334.56586 * 18 12 11 35 35 H 1.08995 * 113.61115 * 105.46932 * 18 12 11 36 36 H 1.07998 * 120.02751 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1976 0.0000 4 6 1.4422 2.5016 0.0006 5 8 0.9022 2.7387 1.3022 6 14 2.5988 3.8895 -0.4541 7 6 3.5805 1.2010 0.0005 8 6 4.2752 0.0072 0.0005 9 6 3.5844 -1.1962 -0.0005 10 8 4.2656 -2.3721 -0.0011 11 6 5.6926 -2.2952 -0.0010 12 6 6.2794 -3.7082 -0.0010 13 1 5.7897 -4.3699 -0.7155 14 6 7.8146 -3.7376 -0.0863 15 6 7.7707 -4.8888 0.9323 16 1 7.6886 -5.8744 0.4740 17 8 8.8019 -4.8198 1.9191 18 6 6.4217 -4.3162 1.4043 19 6 2.1973 -1.1969 0.0057 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 0.6310 2.4518 -0.7258 24 1 1.5689 2.7948 2.0003 25 1 1.8658 5.1809 -0.4577 26 1 3.7264 3.9476 0.5104 27 1 4.1178 2.1379 0.0010 28 1 5.3552 0.0104 0.0014 29 1 6.0277 -1.7622 -0.8907 30 1 6.0277 -1.7630 0.8893 31 1 8.1920 -4.0345 -1.0648 32 1 8.2905 -2.8344 0.2958 33 1 8.7797 -5.5415 2.5624 34 1 6.5161 -3.5715 2.1946 35 1 5.6763 -5.0794 1.6273 36 1 1.6573 -2.1321 0.0106 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13420936_11354858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:20 Heat of formation + Delta-G solvation = -68.906951 kcal Electronic energy + Delta-G solvation = -18166.221168 eV Core-core repulsion = 15197.085806 eV Total energy + Delta-G solvation = -2969.135363 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 251.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47627 -40.38827 -39.15621 -37.30970 -36.02267 -33.58970 -32.13738 -29.52647 -27.99897 -26.76908 -26.14530 -23.94876 -23.03049 -21.66182 -20.61233 -18.83672 -18.61667 -18.28749 -17.22776 -17.00574 -16.59802 -16.30537 -16.05281 -15.61634 -15.29439 -14.74025 -14.64390 -14.33502 -14.25829 -13.81003 -13.53010 -13.48106 -13.13960 -12.97051 -12.61893 -12.54475 -12.21720 -12.13589 -11.98232 -11.68842 -11.51159 -11.21968 -10.75766 -10.54934 -9.83094 -9.18984 -4.92655 0.27309 0.28383 1.31966 1.57238 1.93759 2.08297 2.59864 3.28648 3.45042 3.45867 3.54768 3.68726 3.76759 3.81660 3.87953 3.93169 4.16153 4.22279 4.22885 4.31518 4.41761 4.45143 4.59262 4.67062 4.73557 4.75471 4.78296 4.80062 4.94508 4.98565 5.10219 5.12343 5.28843 5.29829 5.35958 5.57106 5.74054 6.38143 6.49493 6.85053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.025 4.025 3 C -0.161 4.161 4 C -0.074 4.074 5 O -0.546 6.546 6 Si 0.763 3.237 7 C -0.080 4.080 8 C -0.216 4.216 9 C 0.128 3.872 10 O -0.326 6.326 11 C 0.068 3.932 12 C -0.105 4.105 13 H 0.109 0.891 14 C -0.120 4.120 15 C 0.073 3.927 16 H 0.099 0.901 17 O -0.582 6.582 18 C -0.164 4.164 19 C -0.170 4.170 20 H 0.085 0.915 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.122 0.878 24 H 0.384 0.616 25 H -0.302 1.302 26 H -0.280 1.280 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.395 0.605 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 -1.877 -2.229 3.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.026 4.026 3 C -0.162 4.162 4 C -0.184 4.184 5 O -0.354 6.354 6 Si 0.669 3.331 7 C -0.097 4.097 8 C -0.235 4.235 9 C 0.083 3.917 10 O -0.240 6.240 11 C -0.007 4.007 12 C -0.123 4.123 13 H 0.127 0.873 14 C -0.157 4.157 15 C 0.015 3.985 16 H 0.117 0.883 17 O -0.390 6.390 18 C -0.202 4.202 19 C -0.188 4.188 20 H 0.104 0.896 21 H 0.095 0.905 22 H 0.090 0.910 23 H 0.140 0.860 24 H 0.233 0.767 25 H -0.230 1.230 26 H -0.207 1.207 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.245 0.755 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.740 -0.824 -2.641 3.268 hybrid contribution -0.106 -0.639 1.641 1.764 sum 1.634 -1.463 -1.000 2.410 Atomic orbital electron populations 1.20937 0.89725 1.03718 1.03445 1.19747 0.96893 0.91259 0.94665 1.20092 0.93722 0.95462 1.06927 1.25076 1.05319 1.00097 0.87860 1.86555 1.37935 1.93655 1.17239 0.94022 0.75888 0.74032 0.89143 1.21109 0.93438 0.98413 0.96750 1.21379 1.01178 0.91652 1.09249 1.19187 0.91961 0.85093 0.95473 1.86051 1.21247 1.28345 1.88363 1.22963 0.77062 0.98377 1.02306 1.22300 0.95814 0.95315 0.98898 0.87333 1.23067 0.93770 0.99127 0.99731 1.23450 0.86272 0.98934 0.89870 0.88336 1.86475 1.53533 1.54500 1.44485 1.23772 0.98407 1.01215 0.96808 1.20504 0.91187 0.99110 1.08026 0.89603 0.90493 0.91022 0.85988 0.76672 1.23022 1.20688 0.83931 0.83754 0.90394 0.91523 0.89086 0.89382 0.75505 0.90125 0.90677 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.06 9.32 71.24 0.66 0.60 16 2 C -0.03 -0.08 5.88 -19.88 -0.12 -0.20 16 3 C -0.16 -0.28 5.26 -19.85 -0.10 -0.39 16 4 C -0.07 -0.01 1.88 71.23 0.13 0.12 16 5 O -0.55 -1.55 11.93 -148.98 -1.78 -3.32 16 6 Si 0.76 -1.09 30.24 68.60 2.07 0.99 16 7 C -0.08 -0.06 8.65 22.25 0.19 0.13 16 8 C -0.22 -0.39 9.04 22.37 0.20 -0.19 16 9 C 0.13 0.60 6.69 22.51 0.15 0.75 16 10 O -0.33 -1.47 10.14 -92.41 -0.94 -2.40 16 11 C 0.07 -0.05 4.57 71.98 0.33 0.28 16 12 C -0.10 0.22 4.00 -10.27 -0.04 0.18 16 13 H 0.11 -0.28 8.14 -2.38 -0.02 -0.30 16 14 C -0.12 0.30 7.48 31.12 0.23 0.53 16 15 C 0.07 -0.14 5.21 31.18 0.16 0.02 16 16 H 0.10 -0.49 8.14 -2.38 -0.02 -0.51 16 17 O -0.58 -0.54 13.68 -148.98 -2.04 -2.58 16 18 C -0.16 0.20 7.48 31.18 0.23 0.44 16 19 C -0.17 -0.78 9.64 22.37 0.22 -0.56 16 20 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 21 H 0.08 0.15 6.20 -2.39 -0.01 0.14 16 22 H 0.07 -0.02 8.08 -2.38 -0.02 -0.04 16 23 H 0.12 -0.17 7.38 -2.39 -0.02 -0.18 16 24 H 0.38 -0.85 8.70 -74.06 -0.64 -1.49 16 25 H -0.30 -1.85 7.11 99.48 0.71 -1.15 16 26 H -0.28 -0.46 6.68 99.48 0.66 0.20 16 27 H 0.14 -0.36 4.85 -2.91 -0.01 -0.38 16 28 H 0.14 -0.29 6.30 -2.91 -0.02 -0.31 16 29 H 0.08 -0.24 7.66 -2.39 -0.02 -0.26 16 30 H 0.07 -0.08 7.39 -2.38 -0.02 -0.10 16 31 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.09 -0.12 8.10 -2.38 -0.02 -0.13 16 33 H 0.39 -2.73 9.12 -74.06 -0.68 -3.40 16 34 H 0.08 0.06 7.92 -2.39 -0.02 0.04 16 35 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.13 0.44 8.06 -2.91 -0.02 0.41 16 Total: 0.00 -13.16 295.34 -0.65 -13.81 By element: Atomic # 1 Polarization: -7.98 SS G_CDS: -0.23 Total: -8.20 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 2.25 Total: 1.72 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -4.75 Total: -8.31 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: 2.07 Total: 0.99 kcal Total: -13.16 -0.65 -13.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13420936_11354858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.098 kcal (2) G-P(sol) polarization free energy of solvation -13.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds