Wall clock time and date at job start Tue Mar 9 2021 14:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38121 * 119.97179 * 2 1 4 4 C 1.38759 * 119.94185 * 180.25433 * 3 2 1 5 5 O 1.35902 * 120.05241 * 179.74268 * 4 3 2 6 6 C 1.42906 * 116.99507 * 179.72078 * 5 4 3 7 7 O 1.42905 * 109.46854 * 75.00277 * 6 5 4 8 8 Si 1.63101 * 113.99905 * 179.97438 * 7 6 5 9 9 C 1.86306 * 109.46968 * 299.99867 * 8 7 6 10 10 C 1.86297 * 109.47197 * 59.99753 * 8 7 6 11 11 C 1.86302 * 109.47016 * 179.97438 * 8 7 6 12 12 C 1.53000 * 109.46869 * 60.00213 * 11 8 7 13 13 C 1.52998 * 109.46788 * 179.97438 * 11 8 7 14 14 C 1.52998 * 109.46886 * 299.99828 * 11 8 7 15 15 C 1.38710 * 119.88705 * 359.46116 * 4 3 2 16 16 C 1.38162 * 119.94731 * 0.28681 * 15 4 3 17 17 C 1.38250 * 120.05211 * 359.97438 * 16 15 4 18 18 C 1.50704 * 119.94017 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.46873 * 105.00487 * 18 17 16 20 20 Si 1.86295 * 109.47409 * 345.00331 * 18 17 16 21 21 H 1.48498 * 109.47189 * 60.00022 * 20 18 17 22 22 H 1.48497 * 109.47049 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47294 * 299.99979 * 20 18 17 24 24 H 1.08998 * 109.47305 * 270.25943 * 1 2 3 25 25 H 1.09006 * 109.47014 * 30.25981 * 1 2 3 26 26 H 1.09005 * 109.47229 * 150.25443 * 1 2 3 27 27 H 1.08003 * 120.03340 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47490 * 315.00136 * 6 5 4 29 29 H 1.09001 * 109.47232 * 194.99490 * 6 5 4 30 30 H 1.08998 * 109.46973 * 59.99630 * 9 8 7 31 31 H 1.09001 * 109.46903 * 180.02562 * 9 8 7 32 32 H 1.08999 * 109.46903 * 299.99734 * 9 8 7 33 33 H 1.09005 * 109.47355 * 60.00017 * 10 8 7 34 34 H 1.08997 * 109.47216 * 180.02562 * 10 8 7 35 35 H 1.08999 * 109.47207 * 300.00013 * 10 8 7 36 36 H 1.08997 * 109.47412 * 59.99882 * 12 11 8 37 37 H 1.08999 * 109.46454 * 180.02562 * 12 11 8 38 38 H 1.09006 * 109.47253 * 299.99285 * 12 11 8 39 39 H 1.08997 * 109.47329 * 60.00309 * 13 11 8 40 40 H 1.08999 * 109.46825 * 180.02562 * 13 11 8 41 41 H 1.08997 * 109.47384 * 300.00052 * 13 11 8 42 42 H 1.08997 * 109.47329 * 60.00388 * 14 11 8 43 43 H 1.09009 * 109.46785 * 180.02562 * 14 11 8 44 44 H 1.08997 * 109.47366 * 299.99774 * 14 11 8 45 45 H 1.07996 * 120.02738 * 180.29634 * 15 4 3 46 46 H 1.07997 * 119.97732 * 180.02562 * 16 15 4 47 47 H 1.09004 * 109.46816 * 225.00169 * 18 17 16 48 48 H 0.96693 * 114.00155 * 299.99587 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5846 1.1958 -0.0053 5 8 4.2658 2.3717 -0.0106 6 6 5.6928 2.2948 -0.0097 7 8 6.1501 1.9149 -1.3093 8 14 7.7719 1.7941 -1.4327 9 6 8.5492 3.4401 -1.0359 10 6 8.3920 0.5095 -0.2344 11 6 8.2270 1.2941 -3.1687 12 6 7.7177 2.3488 -4.1532 13 6 9.7484 1.1815 -3.2846 14 6 7.5887 -0.0578 -3.4939 15 6 4.2752 -0.0072 0.0006 16 6 3.5803 -1.2013 0.0059 17 6 2.1978 -1.1979 0.0058 18 6 1.4424 -2.5020 0.0121 19 8 0.9017 -2.7328 1.3146 20 14 2.5992 -3.8920 -0.4354 21 1 3.7038 -3.9550 0.5550 22 1 1.8550 -5.1769 -0.4286 23 1 3.1611 -3.6520 -1.7889 24 1 -0.3634 0.0047 1.0276 25 1 -0.3633 0.8877 -0.5179 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6571 2.1319 0.0004 28 1 6.0162 1.5531 0.7205 29 1 6.1089 3.2677 0.2517 30 1 8.2828 3.7322 -0.0201 31 1 9.6330 3.3595 -1.1188 32 1 8.1864 4.1917 -1.7370 33 1 7.9372 -0.4535 -0.4665 34 1 9.4759 0.4292 -0.3165 35 1 8.1257 0.8017 0.7814 36 1 8.1725 3.3118 -3.9215 37 1 7.9836 2.0559 -5.1689 38 1 6.6338 2.4294 -4.0708 39 1 10.1117 0.4304 -2.5832 40 1 10.0147 0.8894 -4.3004 41 1 10.2028 2.1448 -3.0530 42 1 6.5049 0.0229 -3.4115 43 1 7.8554 -0.3505 -4.5095 44 1 7.9516 -0.8091 -2.7925 45 1 5.3551 -0.0104 0.0014 46 1 4.1175 -2.1382 0.0110 47 1 0.6316 -2.4556 -0.7150 48 1 1.5680 -2.7857 2.0133 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13420936_14468166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:28 Heat of formation + Delta-G solvation = -152.477279 kcal Electronic energy + Delta-G solvation = -25086.624841 eV Core-core repulsion = 21650.809777 eV Total energy + Delta-G solvation = -3435.815064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.172 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39692 -39.61158 -37.50347 -36.93402 -36.70805 -33.53366 -31.93018 -29.65504 -29.24299 -28.39207 -27.95714 -27.49331 -26.91049 -25.90723 -23.20590 -21.77729 -20.52969 -19.01901 -18.50404 -18.40071 -17.48910 -16.82484 -16.27928 -16.05821 -15.79008 -15.66269 -15.18590 -14.96309 -14.88407 -14.83946 -14.55506 -14.28593 -14.15480 -13.91769 -13.78015 -13.63343 -13.57036 -13.50783 -13.39019 -13.02828 -13.01809 -12.95400 -12.49413 -12.35899 -12.32279 -12.12249 -12.04659 -11.90836 -11.83602 -11.68104 -11.63179 -11.37883 -10.58098 -10.33816 -10.19817 -9.72200 -9.12910 0.37261 0.38232 1.16360 1.18514 1.41923 1.53923 1.54790 1.85856 1.93187 2.06486 2.43242 2.72912 3.53459 3.61638 3.73396 3.84403 3.94418 3.97859 4.03020 4.03782 4.25341 4.37246 4.38298 4.45750 4.49903 4.52885 4.56471 4.58615 4.67504 4.72591 4.75969 4.77934 4.87403 4.92136 4.94188 5.02648 5.03066 5.04604 5.14627 5.14772 5.25076 5.31383 5.34697 5.39113 5.40188 5.41768 5.47575 5.66375 5.78476 6.37228 6.59431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.018 4.018 3 C -0.151 4.151 4 C 0.141 3.859 5 O -0.298 6.298 6 C 0.248 3.752 7 O -0.645 6.645 8 Si 1.291 2.709 9 C -0.513 4.513 10 C -0.515 4.515 11 C -0.372 4.372 12 C -0.135 4.135 13 C -0.137 4.137 14 C -0.135 4.135 15 C -0.197 4.197 16 C -0.086 4.086 17 C -0.159 4.159 18 C -0.073 4.073 19 O -0.537 6.537 20 Si 0.944 3.056 21 H -0.253 1.253 22 H -0.254 1.254 23 H -0.249 1.249 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.134 0.866 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.130 0.870 46 H 0.124 0.876 47 H 0.117 0.883 48 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 0.213 1.084 2.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.018 4.018 3 C -0.170 4.170 4 C 0.096 3.904 5 O -0.212 6.212 6 C 0.136 3.864 7 O -0.605 6.605 8 Si 1.423 2.577 9 C -0.615 4.615 10 C -0.617 4.617 11 C -0.416 4.416 12 C -0.192 4.192 13 C -0.194 4.194 14 C -0.192 4.192 15 C -0.216 4.216 16 C -0.104 4.104 17 C -0.159 4.159 18 C -0.184 4.184 19 O -0.342 6.342 20 Si 0.767 3.233 21 H -0.177 1.177 22 H -0.178 1.178 23 H -0.172 1.172 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.152 0.848 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.148 0.852 46 H 0.142 0.858 47 H 0.135 0.865 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.909 -0.289 0.383 1.969 hybrid contribution 1.143 0.313 0.404 1.252 sum 3.052 0.024 0.787 3.152 Atomic orbital electron populations 1.20859 0.90227 1.02984 1.03176 1.19526 0.96291 0.91105 0.94864 1.20364 0.90765 0.98815 1.07026 1.18966 0.91668 0.84604 0.95123 1.86260 1.19287 1.28416 1.87210 1.23411 0.79183 1.00688 0.83142 1.85330 1.52398 1.86821 1.35936 0.76592 0.49973 0.65314 0.65823 1.27031 1.08868 1.20258 1.05324 1.27070 1.07803 1.14482 1.12350 1.25745 0.99203 0.99977 1.16663 1.21520 1.01217 0.97579 0.98892 1.21561 0.93794 1.01631 1.02448 1.21524 1.00685 0.95260 1.01766 1.21137 1.00284 0.91810 1.08334 1.20878 0.93519 0.97866 0.98128 1.20015 0.93377 0.95598 1.06944 1.24859 1.04692 0.99660 0.89205 1.86511 1.37030 1.94659 1.16033 0.85789 0.78081 0.78099 0.81324 1.17736 1.17763 1.17239 0.90256 0.91460 0.90800 0.84847 0.91950 0.87336 0.91384 0.90336 0.90523 0.90687 0.90169 0.91383 0.92625 0.92657 0.92104 0.92486 0.92349 0.92445 0.92123 0.92627 0.92710 0.85194 0.85813 0.86547 0.77823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.00 9.54 36.01 0.34 0.34 16 2 C -0.02 -0.03 5.88 -104.65 -0.62 -0.64 16 3 C -0.15 -0.33 9.64 -39.43 -0.38 -0.71 16 4 C 0.14 0.36 6.63 -39.21 -0.26 0.10 16 5 O -0.30 -0.70 10.40 -43.24 -0.45 -1.15 16 6 C 0.25 -0.11 5.42 101.05 0.55 0.44 16 7 O -0.64 -0.16 8.04 -59.04 -0.47 -0.64 16 8 Si 1.29 -2.30 8.45 -169.99 -1.44 -3.74 16 9 C -0.51 0.88 8.50 101.05 0.86 1.74 16 10 C -0.52 0.99 8.50 101.05 0.86 1.85 16 11 C -0.37 0.26 0.53 -90.62 -0.05 0.22 16 12 C -0.13 0.01 7.85 37.16 0.29 0.30 16 13 C -0.14 0.16 7.85 37.16 0.29 0.45 16 14 C -0.14 0.02 7.85 37.16 0.29 0.31 16 15 C -0.20 -0.32 8.78 -39.43 -0.35 -0.67 16 16 C -0.09 -0.10 8.65 -39.60 -0.34 -0.45 16 17 C -0.16 -0.19 5.26 -104.60 -0.55 -0.74 16 18 C -0.07 0.00 2.04 36.01 0.07 0.07 16 19 O -0.54 -0.19 12.81 -35.23 -0.45 -0.64 16 20 Si 0.94 -0.10 25.49 -169.99 -4.33 -4.43 16 21 H -0.25 0.07 6.73 56.52 0.38 0.45 16 22 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 23 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 24 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 25 H 0.07 -0.05 8.09 -51.93 -0.42 -0.47 16 26 H 0.07 -0.03 6.23 -51.93 -0.32 -0.35 16 27 H 0.13 0.14 8.06 -52.48 -0.42 -0.28 16 28 H 0.06 -0.15 5.77 -51.93 -0.30 -0.45 16 29 H 0.11 -0.32 7.21 -51.93 -0.37 -0.69 16 30 H 0.07 -0.16 7.48 -51.93 -0.39 -0.55 16 31 H 0.08 -0.16 7.79 -51.93 -0.40 -0.56 16 32 H 0.08 -0.10 7.79 -51.93 -0.40 -0.50 16 33 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 34 H 0.08 -0.17 7.79 -51.93 -0.40 -0.58 16 35 H 0.07 -0.17 7.48 -51.93 -0.39 -0.56 16 36 H 0.05 -0.04 7.80 -51.93 -0.40 -0.45 16 37 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 38 H 0.06 0.03 7.97 -51.93 -0.41 -0.38 16 39 H 0.06 -0.11 7.79 -51.93 -0.40 -0.51 16 40 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 41 H 0.06 -0.11 7.79 -51.93 -0.40 -0.51 16 42 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 43 H 0.05 0.01 8.14 -51.92 -0.42 -0.41 16 44 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 45 H 0.13 0.00 5.86 -52.49 -0.31 -0.30 16 46 H 0.12 -0.03 4.88 -52.49 -0.26 -0.29 16 47 H 0.12 -0.09 6.49 -51.93 -0.34 -0.42 16 48 H 0.37 -0.99 8.70 45.56 0.40 -0.59 16 LS Contribution 376.10 15.07 5.67 5.67 Total: 0.00 -4.95 376.10 -8.16 -13.10 By element: Atomic # 1 Polarization: -3.09 SS G_CDS: -7.69 Total: -10.78 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 1.01 Total: 2.61 kcal Atomic # 8 Polarization: -1.05 SS G_CDS: -1.38 Total: -2.43 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: -5.77 Total: -8.17 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -4.95 -8.16 -13.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13420936_14468166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.375 kcal (2) G-P(sol) polarization free energy of solvation -4.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds