Wall clock time and date at job start Tue Mar 9 2021 14:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38121 * 119.97179 * 2 1 4 4 C 1.38759 * 119.94185 * 180.25433 * 3 2 1 5 5 O 1.35902 * 120.05241 * 179.74268 * 4 3 2 6 6 C 1.42906 * 116.99507 * 179.72078 * 5 4 3 7 7 O 1.42905 * 109.46854 * 75.00277 * 6 5 4 8 8 Si 1.63101 * 113.99905 * 179.97438 * 7 6 5 9 9 C 1.86306 * 109.46968 * 299.99867 * 8 7 6 10 10 C 1.86297 * 109.47197 * 59.99753 * 8 7 6 11 11 C 1.86302 * 109.47016 * 179.97438 * 8 7 6 12 12 C 1.53000 * 109.46869 * 60.00213 * 11 8 7 13 13 C 1.52998 * 109.46788 * 179.97438 * 11 8 7 14 14 C 1.52998 * 109.46886 * 299.99828 * 11 8 7 15 15 C 1.38710 * 119.88705 * 359.46116 * 4 3 2 16 16 C 1.38162 * 119.94731 * 0.28681 * 15 4 3 17 17 C 1.38250 * 120.05211 * 359.97438 * 16 15 4 18 18 C 1.50704 * 119.94017 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.46873 * 105.00487 * 18 17 16 20 20 Si 1.86295 * 109.47409 * 345.00331 * 18 17 16 21 21 H 1.48498 * 109.47189 * 60.00022 * 20 18 17 22 22 H 1.48497 * 109.47049 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47294 * 299.99979 * 20 18 17 24 24 H 1.08998 * 109.47305 * 270.25943 * 1 2 3 25 25 H 1.09006 * 109.47014 * 30.25981 * 1 2 3 26 26 H 1.09005 * 109.47229 * 150.25443 * 1 2 3 27 27 H 1.08003 * 120.03340 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47490 * 315.00136 * 6 5 4 29 29 H 1.09001 * 109.47232 * 194.99490 * 6 5 4 30 30 H 1.08998 * 109.46973 * 59.99630 * 9 8 7 31 31 H 1.09001 * 109.46903 * 180.02562 * 9 8 7 32 32 H 1.08999 * 109.46903 * 299.99734 * 9 8 7 33 33 H 1.09005 * 109.47355 * 60.00017 * 10 8 7 34 34 H 1.08997 * 109.47216 * 180.02562 * 10 8 7 35 35 H 1.08999 * 109.47207 * 300.00013 * 10 8 7 36 36 H 1.08997 * 109.47412 * 59.99882 * 12 11 8 37 37 H 1.08999 * 109.46454 * 180.02562 * 12 11 8 38 38 H 1.09006 * 109.47253 * 299.99285 * 12 11 8 39 39 H 1.08997 * 109.47329 * 60.00309 * 13 11 8 40 40 H 1.08999 * 109.46825 * 180.02562 * 13 11 8 41 41 H 1.08997 * 109.47384 * 300.00052 * 13 11 8 42 42 H 1.08997 * 109.47329 * 60.00388 * 14 11 8 43 43 H 1.09009 * 109.46785 * 180.02562 * 14 11 8 44 44 H 1.08997 * 109.47366 * 299.99774 * 14 11 8 45 45 H 1.07996 * 120.02738 * 180.29634 * 15 4 3 46 46 H 1.07997 * 119.97732 * 180.02562 * 16 15 4 47 47 H 1.09004 * 109.46816 * 225.00169 * 18 17 16 48 48 H 0.96693 * 114.00155 * 299.99587 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5846 1.1958 -0.0053 5 8 4.2658 2.3717 -0.0106 6 6 5.6928 2.2948 -0.0097 7 8 6.1501 1.9149 -1.3093 8 14 7.7719 1.7941 -1.4327 9 6 8.5492 3.4401 -1.0359 10 6 8.3920 0.5095 -0.2344 11 6 8.2270 1.2941 -3.1687 12 6 7.7177 2.3488 -4.1532 13 6 9.7484 1.1815 -3.2846 14 6 7.5887 -0.0578 -3.4939 15 6 4.2752 -0.0072 0.0006 16 6 3.5803 -1.2013 0.0059 17 6 2.1978 -1.1979 0.0058 18 6 1.4424 -2.5020 0.0121 19 8 0.9017 -2.7328 1.3146 20 14 2.5992 -3.8920 -0.4354 21 1 3.7038 -3.9550 0.5550 22 1 1.8550 -5.1769 -0.4286 23 1 3.1611 -3.6520 -1.7889 24 1 -0.3634 0.0047 1.0276 25 1 -0.3633 0.8877 -0.5179 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6571 2.1319 0.0004 28 1 6.0162 1.5531 0.7205 29 1 6.1089 3.2677 0.2517 30 1 8.2828 3.7322 -0.0201 31 1 9.6330 3.3595 -1.1188 32 1 8.1864 4.1917 -1.7370 33 1 7.9372 -0.4535 -0.4665 34 1 9.4759 0.4292 -0.3165 35 1 8.1257 0.8017 0.7814 36 1 8.1725 3.3118 -3.9215 37 1 7.9836 2.0559 -5.1689 38 1 6.6338 2.4294 -4.0708 39 1 10.1117 0.4304 -2.5832 40 1 10.0147 0.8894 -4.3004 41 1 10.2028 2.1448 -3.0530 42 1 6.5049 0.0229 -3.4115 43 1 7.8554 -0.3505 -4.5095 44 1 7.9516 -0.8091 -2.7925 45 1 5.3551 -0.0104 0.0014 46 1 4.1175 -2.1382 0.0110 47 1 0.6316 -2.4556 -0.7150 48 1 1.5680 -2.7857 2.0133 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13420936_14468166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:27 Heat of formation + Delta-G solvation = -144.029013 kcal Electronic energy + Delta-G solvation = -25086.258497 eV Core-core repulsion = 21650.809777 eV Total energy + Delta-G solvation = -3435.448719 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43572 -39.62099 -37.47997 -36.87654 -36.69925 -33.57604 -31.97883 -29.49596 -29.12580 -28.39876 -27.87047 -27.42761 -26.88277 -25.90416 -23.26097 -21.81040 -20.47431 -19.04598 -18.49769 -18.34181 -17.49889 -16.84822 -16.26016 -16.00060 -15.80541 -15.64618 -15.18684 -14.93824 -14.87254 -14.81097 -14.54954 -14.27236 -14.08657 -13.90079 -13.70886 -13.58051 -13.46103 -13.41082 -13.21801 -12.99960 -12.95547 -12.93432 -12.44052 -12.38930 -12.32727 -12.11990 -11.98329 -11.91013 -11.79052 -11.61750 -11.57713 -11.36876 -10.43697 -10.33756 -10.11529 -9.80054 -9.20449 0.29558 0.30081 1.19304 1.31307 1.42091 1.53523 1.66530 1.91334 2.03853 2.15357 2.50199 2.65375 3.58954 3.70247 3.75714 3.86728 3.94163 4.06758 4.08499 4.10395 4.22007 4.36112 4.42125 4.43344 4.66481 4.69433 4.70669 4.74365 4.74857 4.75257 4.78477 4.80086 4.88131 4.96551 4.98904 5.05674 5.06070 5.06326 5.12824 5.22333 5.29973 5.32297 5.34667 5.36955 5.42871 5.56652 5.60472 5.61818 5.74614 6.32537 6.74786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.026 4.026 3 C -0.166 4.166 4 C 0.127 3.873 5 O -0.315 6.315 6 C 0.233 3.767 7 O -0.663 6.663 8 Si 1.317 2.683 9 C -0.518 4.518 10 C -0.519 4.519 11 C -0.382 4.382 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.137 4.137 15 C -0.204 4.204 16 C -0.093 4.093 17 C -0.164 4.164 18 C -0.071 4.071 19 O -0.549 6.549 20 Si 0.973 3.027 21 H -0.247 1.247 22 H -0.273 1.273 23 H -0.263 1.263 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.136 0.864 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.143 0.857 46 H 0.137 0.863 47 H 0.122 0.878 48 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 0.089 1.941 3.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.026 4.026 3 C -0.185 4.185 4 C 0.082 3.918 5 O -0.229 6.229 6 C 0.122 3.878 7 O -0.623 6.623 8 Si 1.449 2.551 9 C -0.621 4.621 10 C -0.621 4.621 11 C -0.425 4.425 12 C -0.195 4.195 13 C -0.198 4.198 14 C -0.195 4.195 15 C -0.223 4.223 16 C -0.111 4.111 17 C -0.164 4.164 18 C -0.182 4.182 19 O -0.355 6.355 20 Si 0.798 3.202 21 H -0.171 1.171 22 H -0.198 1.198 23 H -0.187 1.187 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.154 0.846 28 H 0.099 0.901 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.161 0.839 46 H 0.155 0.845 47 H 0.140 0.860 48 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.572 -0.407 1.235 2.883 hybrid contribution 0.947 0.356 0.110 1.018 sum 3.520 -0.051 1.345 3.768 Atomic orbital electron populations 1.20873 0.89369 1.03513 1.03322 1.19738 0.97055 0.91111 0.94740 1.20549 0.91070 0.99289 1.07569 1.19167 0.92001 0.85101 0.95541 1.86234 1.20819 1.28578 1.87308 1.23858 0.78058 1.02653 0.83266 1.85321 1.53429 1.87122 1.36475 0.76117 0.49144 0.65239 0.64584 1.27073 1.09197 1.20001 1.05798 1.27077 1.08156 1.14166 1.12744 1.25928 0.99534 0.99287 1.17712 1.21544 1.00685 0.98355 0.98882 1.21603 0.93456 1.02432 1.02279 1.21546 1.00176 0.96079 1.01663 1.21339 1.01076 0.91667 1.08187 1.21097 0.93718 0.98352 0.97889 1.20193 0.93597 0.95976 1.06653 1.24881 1.04865 0.99065 0.89350 1.86481 1.37994 1.94586 1.16477 0.85381 0.77612 0.76727 0.80528 1.17061 1.19791 1.18677 0.90221 0.90835 0.90381 0.84568 0.90095 0.85126 0.90431 0.89879 0.91101 0.90840 0.89666 0.90457 0.91879 0.93341 0.93057 0.91502 0.93186 0.91617 0.93065 0.93358 0.91736 0.83908 0.84518 0.86016 0.76407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.03 9.54 71.24 0.68 0.65 16 2 C -0.03 -0.09 5.88 -19.88 -0.12 -0.21 16 3 C -0.17 -0.86 9.64 22.37 0.22 -0.65 16 4 C 0.13 0.73 6.63 22.51 0.15 0.88 16 5 O -0.31 -1.63 10.40 -69.68 -0.72 -2.35 16 6 C 0.23 -0.30 5.42 113.37 0.61 0.31 16 7 O -0.66 -0.34 8.04 -126.21 -1.01 -1.35 16 8 Si 1.32 -5.34 8.45 68.60 0.58 -4.76 16 9 C -0.52 2.23 8.50 113.37 0.96 3.19 16 10 C -0.52 2.64 8.50 113.37 0.96 3.61 16 11 C -0.38 0.42 0.53 -10.79 -0.01 0.42 16 12 C -0.14 -0.11 7.85 71.98 0.56 0.46 16 13 C -0.14 0.35 7.85 71.98 0.56 0.91 16 14 C -0.14 -0.06 7.85 71.98 0.56 0.51 16 15 C -0.20 -0.69 8.78 22.36 0.20 -0.49 16 16 C -0.09 -0.22 8.65 22.25 0.19 -0.02 16 17 C -0.16 -0.41 5.26 -19.85 -0.10 -0.52 16 18 C -0.07 0.01 2.04 71.24 0.15 0.15 16 19 O -0.55 -0.20 12.81 -148.98 -1.91 -2.11 16 20 Si 0.97 -0.34 25.49 68.60 1.75 1.41 16 21 H -0.25 0.38 6.73 99.48 0.67 1.04 16 22 H -0.27 -0.76 7.11 99.48 0.71 -0.05 16 23 H -0.26 -0.47 7.11 99.48 0.71 0.23 16 24 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.07 -0.09 8.09 -2.38 -0.02 -0.11 16 26 H 0.08 -0.05 6.23 -2.38 -0.01 -0.07 16 27 H 0.14 0.46 8.06 -2.91 -0.02 0.44 16 28 H 0.08 -0.46 5.77 -2.39 -0.01 -0.47 16 29 H 0.13 -0.88 7.21 -2.39 -0.02 -0.90 16 30 H 0.08 -0.48 7.48 -2.39 -0.02 -0.49 16 31 H 0.08 -0.42 7.79 -2.39 -0.02 -0.44 16 32 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 33 H 0.07 -0.33 7.79 -2.38 -0.02 -0.34 16 34 H 0.08 -0.50 7.79 -2.39 -0.02 -0.51 16 35 H 0.08 -0.52 7.48 -2.39 -0.02 -0.54 16 36 H 0.06 -0.07 7.80 -2.39 -0.02 -0.09 16 37 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.05 0.13 7.97 -2.38 -0.02 0.11 16 39 H 0.07 -0.30 7.79 -2.39 -0.02 -0.32 16 40 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.06 -0.28 7.79 -2.39 -0.02 -0.29 16 42 H 0.05 0.11 7.96 -2.39 -0.02 0.09 16 43 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 44 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 45 H 0.14 -0.04 5.86 -2.91 -0.02 -0.06 16 46 H 0.14 -0.15 4.88 -2.91 -0.01 -0.17 16 47 H 0.12 -0.19 6.49 -2.38 -0.02 -0.20 16 48 H 0.39 -2.21 8.70 -74.06 -0.64 -2.86 16 Total: 0.00 -11.54 376.10 5.27 -6.27 By element: Atomic # 1 Polarization: -7.30 SS G_CDS: 1.00 Total: -6.30 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.59 Total: 9.19 kcal Atomic # 8 Polarization: -2.17 SS G_CDS: -3.65 Total: -5.81 kcal Atomic # 14 Polarization: -5.68 SS G_CDS: 2.33 Total: -3.35 kcal Total: -11.54 5.27 -6.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13420936_14468166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.757 kcal (2) G-P(sol) polarization free energy of solvation -11.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds