Wall clock time and date at job start Tue Mar 9 2021 14:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38243 * 119.97258 * 2 1 4 4 C 1.50698 * 119.94121 * 0.02562 * 3 2 1 5 5 O 1.42895 * 109.47344 * 75.00291 * 4 3 2 6 6 Si 1.86307 * 109.46922 * 194.99978 * 4 3 2 7 7 C 1.38288 * 120.11190 * 180.02562 * 3 2 1 8 8 C 1.38124 * 120.05648 * 359.76309 * 7 3 2 9 9 C 1.38750 * 119.94218 * 0.51485 * 8 7 3 10 10 O 1.35902 * 120.05888 * 179.74206 * 9 8 7 11 11 C 1.42905 * 116.99615 * 359.71817 * 10 9 8 12 12 C 1.52999 * 109.46921 * 180.02562 * 11 10 9 13 13 H 1.09004 * 112.85054 * 43.81173 * 12 11 10 14 14 C 1.53784 * 113.61344 * 175.00473 * 12 11 10 15 15 C 1.53775 * 87.08142 * 139.98514 * 14 12 11 16 16 H 1.08997 * 113.62071 * 89.19973 * 15 14 12 17 17 O 1.42907 * 113.61244 * 220.01958 * 15 14 12 18 18 C 1.42895 * 113.99876 * 209.99628 * 17 15 14 19 19 C 1.53006 * 109.47036 * 60.00359 * 18 17 15 20 20 C 1.52997 * 109.47356 * 300.00216 * 18 17 15 21 21 C 1.52999 * 109.47283 * 179.97438 * 18 17 15 22 22 C 1.53780 * 113.61853 * 272.50142 * 12 11 10 23 23 C 1.38169 * 119.97263 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46972 * 269.97523 * 1 2 3 25 25 H 1.08995 * 109.47304 * 29.97829 * 1 2 3 26 26 H 1.08998 * 109.46812 * 149.98249 * 1 2 3 27 27 H 1.08997 * 109.47438 * 314.99578 * 4 3 2 28 28 H 0.96702 * 114.00397 * 59.99280 * 5 4 3 29 29 H 1.48500 * 109.99852 * 58.67632 * 6 4 3 30 30 H 1.48499 * 110.00012 * 180.02562 * 6 4 3 31 31 H 1.08000 * 119.97154 * 180.02562 * 7 3 2 32 32 H 1.08004 * 120.03149 * 180.27525 * 8 7 3 33 33 H 1.09003 * 109.46899 * 60.00553 * 11 10 9 34 34 H 1.08993 * 109.47562 * 300.00717 * 11 10 9 35 35 H 1.09001 * 113.61470 * 25.43168 * 14 12 11 36 36 H 1.09005 * 113.68839 * 254.54433 * 14 12 11 37 37 H 1.09001 * 109.47002 * 299.99477 * 19 18 17 38 38 H 1.08993 * 109.46955 * 59.99914 * 19 18 17 39 39 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.47140 * 180.02562 * 20 18 17 41 41 H 1.09001 * 109.47230 * 299.99260 * 20 18 17 42 42 H 1.09001 * 109.47375 * 60.00099 * 20 18 17 43 43 H 1.09001 * 109.47362 * 300.00863 * 21 18 17 44 44 H 1.09002 * 109.46716 * 60.00223 * 21 18 17 45 45 H 1.09000 * 109.47486 * 180.02562 * 21 18 17 46 46 H 1.08994 * 113.61633 * 105.46851 * 22 12 11 47 47 H 1.09005 * 113.61363 * 334.57025 * 22 12 11 48 48 H 1.07999 * 120.02736 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1975 0.0000 4 6 1.4422 2.5015 0.0006 5 8 0.9023 2.7386 1.3022 6 14 2.5988 3.8895 -0.4542 7 6 3.5805 1.2009 -0.0005 8 6 4.2752 0.0071 0.0039 9 6 3.5844 -1.1962 -0.0020 10 8 4.2656 -2.3722 -0.0029 11 6 5.6926 -2.2953 -0.0040 12 6 6.2794 -3.7083 -0.0057 13 1 5.7718 -4.3766 -0.7012 14 6 7.8119 -3.7387 -0.1296 15 6 7.7940 -4.8803 0.9005 16 1 7.7020 -5.8702 0.4537 17 8 8.8490 -4.8010 1.8612 18 6 9.2808 -6.0701 2.3562 19 6 9.7919 -6.9239 1.1940 20 6 8.1064 -6.7800 3.0328 21 6 10.4069 -5.8652 3.3715 22 6 6.4600 -4.3020 1.4013 23 6 2.1973 -1.1969 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 0.6311 2.4518 -0.7258 28 1 1.5689 2.7948 2.0004 29 1 3.1917 3.6387 -1.7924 30 1 1.8661 5.1811 -0.4566 31 1 4.1178 2.1378 -0.0001 32 1 5.3553 0.0102 0.0079 33 1 6.0284 -1.7631 0.8860 34 1 6.0271 -1.7622 -0.8939 35 1 8.2973 -2.8320 0.2317 36 1 8.1657 -4.0445 -1.1142 37 1 8.9899 -7.0700 0.4703 38 1 10.6284 -6.4181 0.7120 39 1 10.1216 -7.8917 1.5716 40 1 8.4360 -7.7478 3.4108 41 1 7.7424 -6.1719 3.8609 42 1 7.3045 -6.9261 2.3092 43 1 11.2434 -5.3595 2.8892 44 1 10.0432 -5.2567 4.1996 45 1 10.7366 -6.8332 3.7488 46 1 5.7211 -5.0629 1.6524 47 1 6.5758 -3.5494 2.1813 48 1 1.6573 -2.1322 -0.0014 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13420936_14598384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:38 Heat of formation + Delta-G solvation = -68.596253 kcal Electronic energy + Delta-G solvation = -25294.963154 eV Core-core repulsion = 21703.690788 eV Total energy + Delta-G solvation = -3591.272366 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.187 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49313 -40.80890 -39.42724 -38.16751 -37.07563 -33.92210 -33.59180 -32.10401 -29.60301 -28.40337 -28.35430 -27.91877 -26.63829 -26.14003 -24.03985 -23.06543 -21.71387 -20.80369 -20.62076 -18.75043 -18.31204 -17.75529 -17.20591 -16.98188 -16.61719 -16.50394 -16.07643 -15.78154 -15.57374 -15.35855 -14.62267 -14.58383 -14.46136 -14.37000 -14.23824 -14.07156 -13.64475 -13.43368 -13.38156 -13.26939 -13.17439 -12.97669 -12.90487 -12.77626 -12.65487 -12.41173 -12.21620 -12.19085 -11.95002 -11.82432 -11.66765 -11.64998 -11.33735 -11.16758 -10.38210 -10.35915 -9.82204 -9.17458 -5.01405 0.27784 0.30171 1.32805 1.64593 1.96333 2.09842 2.62494 2.75552 3.47151 3.55482 3.57285 3.71448 3.77117 3.78959 3.85988 3.88253 3.91417 3.98636 4.09636 4.14332 4.16251 4.25678 4.30170 4.33528 4.46538 4.54567 4.57466 4.61734 4.67677 4.72450 4.77401 4.77981 4.78586 4.79193 4.85287 4.91592 4.93965 4.94830 5.01874 5.08949 5.12741 5.17660 5.25898 5.30500 5.31649 5.33143 5.39052 5.57657 5.74656 6.39650 6.42505 6.80044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.031 4.031 3 C -0.169 4.169 4 C -0.066 4.066 5 O -0.553 6.553 6 Si 0.770 3.230 7 C -0.069 4.069 8 C -0.215 4.215 9 C 0.128 3.872 10 O -0.327 6.327 11 C 0.069 3.931 12 C -0.104 4.104 13 H 0.104 0.896 14 C -0.121 4.121 15 C 0.059 3.941 16 H 0.099 0.901 17 O -0.380 6.380 18 C 0.098 3.902 19 C -0.177 4.177 20 C -0.174 4.174 21 C -0.139 4.139 22 C -0.148 4.148 23 C -0.172 4.172 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.393 0.607 29 H -0.290 1.290 30 H -0.299 1.299 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.871 -1.707 0.918 4.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.031 4.031 3 C -0.169 4.169 4 C -0.176 4.176 5 O -0.361 6.361 6 Si 0.676 3.324 7 C -0.087 4.087 8 C -0.233 4.233 9 C 0.083 3.917 10 O -0.241 6.241 11 C -0.006 4.006 12 C -0.123 4.123 13 H 0.122 0.878 14 C -0.159 4.159 15 C 0.002 3.998 16 H 0.116 0.884 17 O -0.300 6.300 18 C 0.060 3.940 19 C -0.234 4.234 20 C -0.231 4.231 21 C -0.197 4.197 22 C -0.186 4.186 23 C -0.191 4.191 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.122 0.878 28 H 0.243 0.757 29 H -0.217 1.217 30 H -0.227 1.227 31 H 0.172 0.828 32 H 0.168 0.832 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.521 -1.121 0.099 3.696 hybrid contribution -0.544 -0.618 -0.322 0.884 sum 2.977 -1.739 -0.223 3.455 Atomic orbital electron populations 1.20852 0.89978 1.03060 1.03180 1.19731 0.96763 0.91516 0.95087 1.20210 0.94128 0.95440 1.07158 1.25061 1.03435 1.00053 0.89042 1.86461 1.38460 1.94478 1.16699 0.93938 0.81521 0.73860 0.83071 1.21022 0.92870 0.98274 0.96493 1.21438 1.01424 0.91522 1.08958 1.19175 0.91846 0.85245 0.95452 1.86057 1.21381 1.28350 1.88354 1.22967 0.76916 0.98259 1.02448 1.22270 0.95945 0.95378 0.98673 0.87770 1.23199 0.93609 0.99496 0.99558 1.23668 0.86846 0.99161 0.90171 0.88361 1.88008 1.53491 1.29554 1.58954 1.21669 0.94527 0.83798 0.94044 1.22452 1.01827 1.00756 0.98394 1.22445 0.98149 1.01337 1.01207 1.21794 0.96912 1.03034 0.97921 1.23587 0.97324 1.00936 0.96718 1.20473 0.91383 0.98942 1.08289 0.90300 0.91134 0.90898 0.87797 0.75681 1.21650 1.22677 0.82775 0.83239 0.90944 0.90587 0.88875 0.89447 0.91894 0.92067 0.90481 0.90619 0.92455 0.92201 0.92180 0.92381 0.89813 0.91239 0.89891 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.22 9.54 71.24 0.68 0.46 16 2 C -0.03 -0.13 5.88 -19.88 -0.12 -0.24 16 3 C -0.17 -0.35 5.26 -19.85 -0.10 -0.45 16 4 C -0.07 -0.05 2.04 71.24 0.15 0.10 16 5 O -0.55 -0.50 12.81 -148.98 -1.91 -2.41 16 6 Si 0.77 -0.97 29.91 68.60 2.05 1.08 16 7 C -0.07 0.02 8.65 22.25 0.19 0.22 16 8 C -0.21 -0.22 9.04 22.37 0.20 -0.02 16 9 C 0.13 0.60 6.69 22.51 0.15 0.75 16 10 O -0.33 -1.52 10.14 -92.45 -0.94 -2.45 16 11 C 0.07 -0.07 4.58 71.98 0.33 0.26 16 12 C -0.10 0.19 4.01 -10.27 -0.04 0.15 16 13 H 0.10 -0.18 8.14 -2.38 -0.02 -0.20 16 14 C -0.12 0.32 7.47 31.12 0.23 0.55 16 15 C 0.06 -0.03 2.82 31.12 0.09 0.06 16 16 H 0.10 -0.21 5.54 -2.39 -0.01 -0.23 16 17 O -0.38 -1.23 10.00 -148.98 -1.49 -2.72 16 18 C 0.10 0.01 1.11 -10.79 -0.01 0.00 16 19 C -0.18 0.35 8.38 71.98 0.60 0.96 16 20 C -0.17 0.19 8.39 71.98 0.60 0.80 16 21 C -0.14 0.10 8.84 71.98 0.64 0.73 16 22 C -0.15 0.02 7.46 31.12 0.23 0.26 16 23 C -0.17 -0.91 9.64 22.37 0.22 -0.69 16 24 H 0.08 0.15 8.14 -2.38 -0.02 0.13 16 25 H 0.07 0.13 6.23 -2.39 -0.01 0.11 16 26 H 0.07 0.02 8.08 -2.39 -0.02 0.00 16 27 H 0.10 0.21 6.49 -2.39 -0.02 0.19 16 28 H 0.39 -2.70 8.70 -74.06 -0.64 -3.34 16 29 H -0.29 -1.19 7.11 99.48 0.71 -0.49 16 30 H -0.30 -1.83 7.11 99.48 0.71 -1.12 16 31 H 0.16 -0.96 5.12 -2.91 -0.01 -0.98 16 32 H 0.15 -0.52 6.30 -2.91 -0.02 -0.53 16 33 H 0.07 -0.16 7.35 -2.39 -0.02 -0.18 16 34 H 0.08 -0.24 7.67 -2.39 -0.02 -0.26 16 35 H 0.09 -0.21 8.10 -2.39 -0.02 -0.23 16 36 H 0.09 -0.38 8.14 -2.38 -0.02 -0.40 16 37 H 0.06 -0.17 6.24 -2.39 -0.01 -0.19 16 38 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.06 -0.08 7.02 -2.39 -0.02 -0.10 16 43 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.07 0.01 8.14 -2.39 -0.02 0.00 16 47 H 0.08 0.13 7.90 -2.38 -0.02 0.11 16 48 H 0.13 0.56 8.06 -2.91 -0.02 0.53 16 Total: 0.00 -12.82 375.24 2.08 -10.74 By element: Atomic # 1 Polarization: -8.45 SS G_CDS: 0.33 Total: -8.12 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 4.04 Total: 3.89 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: -4.33 Total: -7.58 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: 2.05 Total: 1.08 kcal Total: -12.82 2.08 -10.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13420936_14598384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.859 kcal (2) G-P(sol) polarization free energy of solvation -12.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds