Wall clock time and date at job start Tue Mar 9 2021 14:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38241 * 119.97662 * 2 1 4 4 C 1.50704 * 119.94101 * 0.02562 * 3 2 1 5 5 O 1.42903 * 109.47082 * 74.97597 * 4 3 2 6 6 Si 1.86298 * 109.47026 * 194.97775 * 4 3 2 7 7 C 1.38288 * 120.11556 * 179.97438 * 3 2 1 8 8 C 1.38119 * 120.05366 * 0.28328 * 7 3 2 9 9 C 1.38758 * 119.94423 * 359.46216 * 8 7 3 10 10 O 1.35898 * 120.05487 * 180.29868 * 9 8 7 11 11 C 1.42901 * 117.00043 * 0.21526 * 10 9 8 12 12 C 1.53002 * 109.47022 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47512 * 54.99830 * 12 11 10 14 14 C 1.53001 * 109.47409 * 174.99802 * 12 11 10 15 15 C 1.52996 * 109.47675 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47334 * 300.00513 * 15 14 12 17 17 H 1.09003 * 109.46773 * 299.99804 * 16 15 14 18 18 O 1.42893 * 109.47248 * 179.97438 * 16 15 14 19 19 C 1.53007 * 109.47290 * 59.99471 * 16 15 14 20 20 C 1.53002 * 109.47098 * 300.00085 * 19 16 15 21 21 C 1.38172 * 119.97101 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.47487 * 89.99942 * 1 2 3 23 23 H 1.09000 * 109.47394 * 209.99878 * 1 2 3 24 24 H 1.09007 * 109.47014 * 329.99677 * 1 2 3 25 25 H 1.08999 * 109.47149 * 314.97690 * 4 3 2 26 26 H 0.96695 * 114.00214 * 59.99904 * 5 4 3 27 27 H 1.48501 * 110.00326 * 58.68030 * 6 4 3 28 28 H 1.48498 * 109.99895 * 180.02562 * 6 4 3 29 29 H 1.08002 * 119.96980 * 179.97438 * 7 3 2 30 30 H 1.07998 * 120.02956 * 179.72220 * 8 7 3 31 31 H 1.09004 * 109.47201 * 299.99532 * 11 10 9 32 32 H 1.08999 * 109.47378 * 60.00067 * 11 10 9 33 33 H 1.08998 * 109.46697 * 300.00278 * 14 12 11 34 34 H 1.09003 * 109.46760 * 59.99569 * 14 12 11 35 35 H 1.09003 * 109.46575 * 59.99883 * 15 14 12 36 36 H 1.08992 * 109.47323 * 179.97438 * 15 14 12 37 37 H 0.96704 * 114.00005 * 179.97438 * 18 16 15 38 38 H 1.08996 * 109.46751 * 60.00056 * 19 16 15 39 39 H 1.08998 * 109.47295 * 180.02562 * 19 16 15 40 40 H 1.09003 * 109.47056 * 300.00278 * 20 19 16 41 41 H 1.09000 * 109.47369 * 179.97438 * 20 19 16 42 42 H 1.07998 * 120.02866 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1975 0.0000 4 6 1.4423 2.5015 0.0006 5 8 0.9018 2.7384 1.3021 6 14 2.5991 3.8895 -0.4535 7 6 3.5805 1.2008 0.0005 8 6 4.2752 0.0070 -0.0048 9 6 3.5843 -1.1963 0.0005 10 8 4.2655 -2.3722 0.0014 11 6 5.6924 -2.2954 0.0014 12 6 6.2793 -3.7084 0.0030 13 1 5.8743 -4.2710 -0.8381 14 6 7.8020 -3.6284 -0.1227 15 6 8.3889 -5.0413 -0.1204 16 6 8.0214 -5.7441 1.1879 17 1 8.4264 -5.1811 2.0289 18 8 8.5691 -7.0639 1.1898 19 6 6.4987 -5.8242 1.3137 20 6 5.9118 -4.4112 1.3115 21 6 2.1972 -1.1970 0.0005 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 0.6313 2.4520 -0.7261 26 1 1.5682 2.7943 2.0005 27 1 3.1923 3.6391 -1.7916 28 1 1.8664 5.1811 -0.4559 29 1 4.1178 2.1377 0.0001 30 1 5.3551 0.0101 -0.0090 31 1 6.0277 -1.7634 -0.8891 32 1 6.0276 -1.7621 0.8910 33 1 8.0637 -3.1274 -1.0547 34 1 8.2069 -3.0657 0.7184 35 1 7.9839 -5.6043 -0.9614 36 1 9.4736 -4.9843 -0.2105 37 1 8.3754 -7.5690 1.9914 38 1 6.0938 -6.3871 0.4727 39 1 6.2369 -6.3245 2.2460 40 1 6.3168 -3.8482 2.1525 41 1 4.8269 -4.4681 1.4006 42 1 1.6572 -2.1322 0.0014 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13420936_16737254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:49 Heat of formation + Delta-G solvation = -115.957054 kcal Electronic energy + Delta-G solvation = -21827.171749 eV Core-core repulsion = 18544.920903 eV Total energy + Delta-G solvation = -3282.250846 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.155 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44134 -40.27541 -39.17385 -37.29235 -36.62279 -33.57416 -32.52927 -31.91190 -31.25013 -28.39256 -26.62517 -26.01618 -23.87150 -23.33213 -22.50958 -21.47461 -20.96279 -18.78624 -18.29950 -18.19345 -17.24828 -17.08883 -16.58423 -16.37372 -15.87507 -15.56184 -15.42573 -15.14209 -14.82409 -14.47180 -14.41157 -14.30076 -14.07014 -13.75738 -13.47701 -13.30745 -13.27236 -13.12927 -12.91866 -12.50742 -12.21330 -12.14563 -12.05249 -11.87246 -11.76650 -11.60500 -11.59396 -11.17622 -10.76313 -10.38233 -9.78590 -9.13172 -5.03951 0.31049 0.34199 1.31431 1.65287 1.98669 2.10554 2.65302 3.11543 3.50936 3.53497 3.61361 3.63927 3.72318 3.84050 3.86911 3.99663 4.05191 4.12153 4.21892 4.25815 4.26490 4.36010 4.37789 4.40147 4.42637 4.52355 4.58941 4.70395 4.72200 4.76964 4.87620 4.96123 4.98772 5.01345 5.07807 5.08276 5.12621 5.23943 5.30607 5.33014 5.35257 5.61063 5.75746 6.41467 6.59480 6.67409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.017 4.017 3 C -0.162 4.162 4 C -0.060 4.060 5 O -0.540 6.540 6 Si 0.678 3.322 7 C -0.069 4.069 8 C -0.212 4.212 9 C 0.142 3.858 10 O -0.311 6.311 11 C 0.063 3.937 12 C -0.088 4.088 13 H 0.085 0.915 14 C -0.110 4.110 15 C -0.112 4.112 16 C 0.103 3.897 17 H 0.055 0.945 18 O -0.569 6.569 19 C -0.152 4.152 20 C -0.111 4.111 21 C -0.156 4.156 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.378 0.622 27 H -0.258 1.258 28 H -0.254 1.254 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.379 0.621 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 0.547 2.308 3.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.017 4.017 3 C -0.163 4.163 4 C -0.171 4.171 5 O -0.345 6.345 6 Si 0.580 3.420 7 C -0.086 4.086 8 C -0.231 4.231 9 C 0.097 3.903 10 O -0.225 6.225 11 C -0.012 4.012 12 C -0.106 4.106 13 H 0.103 0.897 14 C -0.147 4.147 15 C -0.149 4.149 16 C 0.044 3.956 17 H 0.073 0.927 18 O -0.375 6.375 19 C -0.190 4.190 20 C -0.148 4.148 21 C -0.174 4.174 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.103 0.897 25 H 0.129 0.871 26 H 0.225 0.775 27 H -0.182 1.182 28 H -0.179 1.179 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.226 0.774 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.192 1.182 0.810 2.618 hybrid contribution -0.377 -0.519 0.325 0.719 sum 1.815 0.664 1.135 2.241 Atomic orbital electron populations 1.20951 0.90466 1.04083 1.02674 1.19556 0.96236 0.91230 0.94701 1.20063 0.93573 0.95489 1.07141 1.24915 1.03435 0.99806 0.88933 1.86484 1.37296 1.94503 1.16245 0.94975 0.83742 0.77591 0.85672 1.20725 0.93088 0.97313 0.97490 1.21173 1.00360 0.91901 1.09662 1.18990 0.91683 0.84659 0.94992 1.86068 1.20155 1.27996 1.88247 1.22921 0.78126 0.98526 1.01676 1.21235 0.95354 0.94171 0.99887 0.89699 1.21475 0.93411 0.96934 1.02920 1.21438 1.01550 0.94854 0.97063 1.21845 0.92025 0.83664 0.98060 0.92713 1.86517 1.78485 1.27075 1.45437 1.22284 0.96172 0.97758 1.02807 1.21512 1.01622 0.95059 0.96644 1.20360 0.90926 0.98723 1.07404 0.90956 0.91209 0.89676 0.87133 0.77451 1.18226 1.17936 0.85277 0.85118 0.91713 0.91685 0.90755 0.91235 0.90944 0.90804 0.77364 0.90943 0.91505 0.91742 0.90707 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.05 9.32 36.00 0.34 0.29 16 2 C -0.02 -0.02 5.88 -104.65 -0.62 -0.64 16 3 C -0.16 -0.12 5.26 -104.60 -0.55 -0.67 16 4 C -0.06 -0.01 1.88 36.01 0.07 0.06 16 5 O -0.54 -0.12 11.92 -35.23 -0.42 -0.54 16 6 Si 0.68 -0.48 29.91 -169.99 -5.08 -5.57 16 7 C -0.07 0.01 8.65 -39.61 -0.34 -0.33 16 8 C -0.21 -0.07 9.04 -39.43 -0.36 -0.42 16 9 C 0.14 0.24 6.69 -39.22 -0.26 -0.02 16 10 O -0.31 -0.46 9.67 -19.42 -0.19 -0.64 16 11 C 0.06 -0.07 4.12 37.16 0.15 0.08 16 12 C -0.09 0.12 2.43 -90.62 -0.22 -0.10 16 13 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 14 C -0.11 0.23 5.20 -26.73 -0.14 0.09 16 15 C -0.11 0.07 5.57 -26.74 -0.15 -0.08 16 16 C 0.10 -0.05 3.47 -26.73 -0.09 -0.14 16 17 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 18 O -0.57 -0.53 13.32 -35.23 -0.47 -1.00 16 19 C -0.15 0.15 5.54 -26.73 -0.15 0.00 16 20 C -0.11 0.12 5.10 -26.73 -0.14 -0.01 16 21 C -0.16 -0.28 9.64 -39.43 -0.38 -0.66 16 22 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 23 H 0.07 -0.02 8.08 -51.93 -0.42 -0.44 16 24 H 0.08 0.08 6.20 -51.93 -0.32 -0.24 16 25 H 0.11 0.06 7.38 -51.93 -0.38 -0.32 16 26 H 0.38 -1.30 8.70 45.56 0.40 -0.90 16 27 H -0.26 -0.50 7.11 56.52 0.40 -0.10 16 28 H -0.25 -0.64 7.11 56.52 0.40 -0.24 16 29 H 0.13 -0.34 5.12 -52.49 -0.27 -0.61 16 30 H 0.13 -0.22 6.30 -52.49 -0.33 -0.55 16 31 H 0.06 -0.12 7.65 -51.93 -0.40 -0.52 16 32 H 0.06 -0.13 7.67 -51.93 -0.40 -0.53 16 33 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 34 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 35 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 36 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 37 H 0.38 -1.10 9.08 45.56 0.41 -0.69 16 38 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 39 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 40 H 0.06 -0.09 8.14 -51.93 -0.42 -0.52 16 41 H 0.07 0.00 7.82 -51.93 -0.41 -0.41 16 42 H 0.13 0.14 8.06 -52.49 -0.42 -0.28 16 LS Contribution 330.32 15.07 4.98 4.98 Total: 0.00 -6.10 330.32 -9.98 -16.08 By element: Atomic # 1 Polarization: -4.79 SS G_CDS: -5.96 Total: -10.76 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.84 Total: -2.56 kcal Atomic # 8 Polarization: -1.10 SS G_CDS: -1.08 Total: -2.18 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: -5.08 Total: -5.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -6.10 -9.98 -16.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13420936_16737254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.873 kcal (2) G-P(sol) polarization free energy of solvation -6.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds