Wall clock time and date at job start Tue Mar 9 2021 14:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38241 * 119.97662 * 2 1 4 4 C 1.50704 * 119.94101 * 0.02562 * 3 2 1 5 5 O 1.42903 * 109.47082 * 74.97597 * 4 3 2 6 6 Si 1.86298 * 109.47026 * 194.97775 * 4 3 2 7 7 C 1.38288 * 120.11556 * 179.97438 * 3 2 1 8 8 C 1.38119 * 120.05366 * 0.28328 * 7 3 2 9 9 C 1.38758 * 119.94423 * 359.46216 * 8 7 3 10 10 O 1.35898 * 120.05487 * 180.29868 * 9 8 7 11 11 C 1.42901 * 117.00043 * 0.21526 * 10 9 8 12 12 C 1.53002 * 109.47022 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47512 * 54.99830 * 12 11 10 14 14 C 1.53001 * 109.47409 * 174.99802 * 12 11 10 15 15 C 1.52996 * 109.47675 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47334 * 300.00513 * 15 14 12 17 17 H 1.09003 * 109.46773 * 299.99804 * 16 15 14 18 18 O 1.42893 * 109.47248 * 179.97438 * 16 15 14 19 19 C 1.53007 * 109.47290 * 59.99471 * 16 15 14 20 20 C 1.53002 * 109.47098 * 300.00085 * 19 16 15 21 21 C 1.38172 * 119.97101 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.47487 * 89.99942 * 1 2 3 23 23 H 1.09000 * 109.47394 * 209.99878 * 1 2 3 24 24 H 1.09007 * 109.47014 * 329.99677 * 1 2 3 25 25 H 1.08999 * 109.47149 * 314.97690 * 4 3 2 26 26 H 0.96695 * 114.00214 * 59.99904 * 5 4 3 27 27 H 1.48501 * 110.00326 * 58.68030 * 6 4 3 28 28 H 1.48498 * 109.99895 * 180.02562 * 6 4 3 29 29 H 1.08002 * 119.96980 * 179.97438 * 7 3 2 30 30 H 1.07998 * 120.02956 * 179.72220 * 8 7 3 31 31 H 1.09004 * 109.47201 * 299.99532 * 11 10 9 32 32 H 1.08999 * 109.47378 * 60.00067 * 11 10 9 33 33 H 1.08998 * 109.46697 * 300.00278 * 14 12 11 34 34 H 1.09003 * 109.46760 * 59.99569 * 14 12 11 35 35 H 1.09003 * 109.46575 * 59.99883 * 15 14 12 36 36 H 1.08992 * 109.47323 * 179.97438 * 15 14 12 37 37 H 0.96704 * 114.00005 * 179.97438 * 18 16 15 38 38 H 1.08996 * 109.46751 * 60.00056 * 19 16 15 39 39 H 1.08998 * 109.47295 * 180.02562 * 19 16 15 40 40 H 1.09003 * 109.47056 * 300.00278 * 20 19 16 41 41 H 1.09000 * 109.47369 * 179.97438 * 20 19 16 42 42 H 1.07998 * 120.02866 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1975 0.0000 4 6 1.4423 2.5015 0.0006 5 8 0.9018 2.7384 1.3021 6 14 2.5991 3.8895 -0.4535 7 6 3.5805 1.2008 0.0005 8 6 4.2752 0.0070 -0.0048 9 6 3.5843 -1.1963 0.0005 10 8 4.2655 -2.3722 0.0014 11 6 5.6924 -2.2954 0.0014 12 6 6.2793 -3.7084 0.0030 13 1 5.8743 -4.2710 -0.8381 14 6 7.8020 -3.6284 -0.1227 15 6 8.3889 -5.0413 -0.1204 16 6 8.0214 -5.7441 1.1879 17 1 8.4264 -5.1811 2.0289 18 8 8.5691 -7.0639 1.1898 19 6 6.4987 -5.8242 1.3137 20 6 5.9118 -4.4112 1.3115 21 6 2.1972 -1.1970 0.0005 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 0.6313 2.4520 -0.7261 26 1 1.5682 2.7943 2.0005 27 1 3.1923 3.6391 -1.7916 28 1 1.8664 5.1811 -0.4559 29 1 4.1178 2.1377 0.0001 30 1 5.3551 0.0101 -0.0090 31 1 6.0277 -1.7634 -0.8891 32 1 6.0276 -1.7621 0.8910 33 1 8.0637 -3.1274 -1.0547 34 1 8.2069 -3.0657 0.7184 35 1 7.9839 -5.6043 -0.9614 36 1 9.4736 -4.9843 -0.2105 37 1 8.3754 -7.5690 1.9914 38 1 6.0938 -6.3871 0.4727 39 1 6.2369 -6.3245 2.2460 40 1 6.3168 -3.8482 2.1525 41 1 4.8269 -4.4681 1.4006 42 1 1.6572 -2.1322 0.0014 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13420936_16737254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:27:48 Heat of formation + Delta-G solvation = -112.943701 kcal Electronic energy + Delta-G solvation = -21827.041080 eV Core-core repulsion = 18544.920903 eV Total energy + Delta-G solvation = -3282.120178 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.155 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43538 -40.22079 -39.16530 -37.27858 -36.60125 -33.57915 -32.50549 -31.82117 -31.23454 -28.39635 -26.58482 -25.99205 -23.78158 -23.32924 -22.47937 -21.45486 -20.87303 -18.77677 -18.28531 -18.17431 -17.24705 -17.03472 -16.59677 -16.33313 -15.85483 -15.50802 -15.39692 -15.09279 -14.77662 -14.51229 -14.39934 -14.30894 -14.06756 -13.74260 -13.47583 -13.25116 -13.19870 -13.07192 -12.92166 -12.46852 -12.24042 -12.13124 -12.04745 -11.81857 -11.75967 -11.53558 -11.51875 -11.08815 -10.71899 -10.37995 -9.81423 -9.15597 -5.01238 0.28707 0.31359 1.33312 1.65191 1.97263 2.14827 2.63032 3.23044 3.57702 3.64383 3.68670 3.70756 3.77983 3.87039 3.91977 4.08658 4.14375 4.18426 4.26310 4.33386 4.36332 4.39952 4.41296 4.48484 4.52882 4.55825 4.61928 4.71367 4.77337 4.82769 4.94967 4.98181 5.06374 5.08069 5.12438 5.15057 5.18204 5.28723 5.30274 5.34053 5.43525 5.58343 5.75852 6.42651 6.80509 6.85203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.030 4.030 3 C -0.169 4.169 4 C -0.066 4.066 5 O -0.554 6.554 6 Si 0.773 3.227 7 C -0.069 4.069 8 C -0.214 4.214 9 C 0.130 3.870 10 O -0.327 6.327 11 C 0.059 3.941 12 C -0.084 4.084 13 H 0.071 0.929 14 C -0.103 4.103 15 C -0.114 4.114 16 C 0.101 3.899 17 H 0.065 0.935 18 O -0.591 6.591 19 C -0.148 4.148 20 C -0.108 4.108 21 C -0.173 4.173 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.394 0.606 27 H -0.290 1.290 28 H -0.300 1.300 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.393 0.607 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.470 1.312 2.886 4.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.031 4.031 3 C -0.170 4.170 4 C -0.176 4.176 5 O -0.362 6.362 6 Si 0.679 3.321 7 C -0.087 4.087 8 C -0.232 4.232 9 C 0.084 3.916 10 O -0.241 6.241 11 C -0.015 4.015 12 C -0.103 4.103 13 H 0.089 0.911 14 C -0.140 4.140 15 C -0.152 4.152 16 C 0.042 3.958 17 H 0.083 0.917 18 O -0.400 6.400 19 C -0.186 4.186 20 C -0.145 4.145 21 C -0.192 4.192 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.120 0.880 26 H 0.244 0.756 27 H -0.217 1.217 28 H -0.228 1.228 29 H 0.173 0.827 30 H 0.170 0.830 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.243 0.757 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.244 1.916 1.422 4.027 hybrid contribution -0.728 -0.778 0.140 1.075 sum 2.516 1.138 1.561 3.173 Atomic orbital electron populations 1.20927 0.90183 1.03933 1.02850 1.19723 0.96685 0.91538 0.95108 1.20208 0.94194 0.95372 1.07230 1.25046 1.03443 1.00139 0.88957 1.86450 1.38524 1.94456 1.16728 0.93936 0.81425 0.73748 0.82991 1.21028 0.92810 0.98350 0.96470 1.21447 1.01515 0.91395 1.08873 1.19156 0.91766 0.85289 0.95389 1.86049 1.21470 1.28277 1.88334 1.23069 0.76962 0.98700 1.02784 1.21187 0.95895 0.94041 0.99157 0.91081 1.21430 0.92521 0.96100 1.03952 1.21470 1.01382 0.95694 0.96630 1.21922 0.92089 0.83324 0.98417 0.91704 1.86480 1.78830 1.27893 1.46777 1.22227 0.95960 0.97804 1.02559 1.21475 1.00782 0.95084 0.97185 1.20471 0.91502 0.98859 1.08367 0.90631 0.90869 0.90232 0.88046 0.75608 1.21682 1.22782 0.82730 0.82968 0.90738 0.90301 0.89884 0.89956 0.92275 0.91067 0.75744 0.92357 0.90798 0.90819 0.92004 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.20 9.32 71.23 0.66 0.46 16 2 C -0.03 -0.11 5.88 -19.88 -0.12 -0.22 16 3 C -0.17 -0.22 5.26 -19.85 -0.10 -0.33 16 4 C -0.07 -0.01 1.88 71.24 0.13 0.13 16 5 O -0.55 -0.11 11.92 -148.98 -1.78 -1.89 16 6 Si 0.77 -1.49 29.91 68.60 2.05 0.57 16 7 C -0.07 0.10 8.65 22.25 0.19 0.29 16 8 C -0.21 0.09 9.04 22.37 0.20 0.30 16 9 C 0.13 0.45 6.69 22.51 0.15 0.60 16 10 O -0.33 -1.05 9.67 -92.40 -0.89 -1.95 16 11 C 0.06 -0.18 4.12 71.98 0.30 0.12 16 12 C -0.08 0.24 2.43 -10.79 -0.03 0.21 16 13 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 14 C -0.10 0.51 5.20 30.59 0.16 0.67 16 15 C -0.11 0.12 5.57 30.59 0.17 0.29 16 16 C 0.10 -0.09 3.47 30.60 0.11 0.01 16 17 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 18 O -0.59 -1.25 13.32 -148.98 -1.98 -3.24 16 19 C -0.15 0.23 5.54 30.60 0.17 0.40 16 20 C -0.11 0.23 5.10 30.60 0.16 0.39 16 21 C -0.17 -0.80 9.64 22.37 0.22 -0.58 16 22 H 0.08 0.04 8.14 -2.38 -0.02 0.02 16 23 H 0.07 0.04 8.08 -2.39 -0.02 0.02 16 24 H 0.08 0.22 6.20 -2.38 -0.01 0.20 16 25 H 0.10 0.17 7.38 -2.39 -0.02 0.15 16 26 H 0.39 -3.02 8.70 -74.06 -0.64 -3.67 16 27 H -0.29 -1.02 7.11 99.48 0.71 -0.31 16 28 H -0.30 -1.69 7.11 99.48 0.71 -0.98 16 29 H 0.16 -1.15 5.12 -2.91 -0.01 -1.16 16 30 H 0.15 -0.83 6.30 -2.91 -0.02 -0.85 16 31 H 0.07 -0.37 7.65 -2.38 -0.02 -0.39 16 32 H 0.08 -0.45 7.67 -2.39 -0.02 -0.47 16 33 H 0.08 -0.54 8.14 -2.39 -0.02 -0.55 16 34 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.39 -2.22 9.08 -74.05 -0.67 -2.89 16 38 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.06 0.04 7.82 -2.39 -0.02 0.02 16 42 H 0.13 0.51 8.06 -2.91 -0.02 0.48 16 Total: 0.00 -14.95 330.32 -0.49 -15.45 By element: Atomic # 1 Polarization: -11.42 SS G_CDS: -0.26 Total: -11.68 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 2.37 Total: 2.74 kcal Atomic # 8 Polarization: -2.42 SS G_CDS: -4.65 Total: -7.07 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: 2.05 Total: 0.57 kcal Total: -14.95 -0.49 -15.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13420936_16737254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.497 kcal (2) G-P(sol) polarization free energy of solvation -14.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds