Wall clock time and date at job start Tue Mar 9 2021 14:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38121 * 119.97404 * 2 1 4 4 C 1.38752 * 119.94891 * 179.97438 * 3 2 1 5 5 O 1.35896 * 120.05890 * 180.02562 * 4 3 2 6 6 C 1.42901 * 117.00083 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47050 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47093 * 179.97438 * 7 6 5 9 9 O 1.42905 * 109.47021 * 179.97438 * 8 7 6 10 10 Si 1.63105 * 113.99905 * 179.97438 * 9 8 7 11 11 C 1.86302 * 109.47065 * 300.00095 * 10 9 8 12 12 C 1.86296 * 109.47002 * 60.00039 * 10 9 8 13 13 C 1.86303 * 109.47109 * 180.02562 * 10 9 8 14 14 C 1.53002 * 109.46814 * 59.99951 * 13 10 9 15 15 C 1.52996 * 109.46836 * 180.02562 * 13 10 9 16 16 C 1.52997 * 109.46951 * 299.99850 * 13 10 9 17 17 C 1.38717 * 119.88597 * 359.72795 * 4 3 2 18 18 C 1.38163 * 119.94349 * 0.50633 * 17 4 3 19 19 C 1.38251 * 120.05527 * 359.50941 * 18 17 4 20 20 C 1.50695 * 119.94233 * 180.25730 * 19 18 17 21 21 O 1.42900 * 109.47207 * 105.00432 * 20 19 18 22 22 Si 1.86298 * 109.47528 * 345.00183 * 20 19 18 23 23 H 1.48505 * 109.47145 * 59.99891 * 22 20 19 24 24 H 1.48492 * 109.47422 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46937 * 300.00363 * 22 20 19 26 26 H 1.08998 * 109.47220 * 270.02008 * 1 2 3 27 27 H 1.08995 * 109.47386 * 30.02488 * 1 2 3 28 28 H 1.09009 * 109.46901 * 150.02351 * 1 2 3 29 29 H 1.07997 * 120.02529 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.46832 * 299.99699 * 6 5 4 31 31 H 1.08998 * 109.47360 * 59.99984 * 6 5 4 32 32 H 1.09000 * 109.47142 * 300.00051 * 7 6 5 33 33 H 1.08998 * 109.47342 * 59.99618 * 7 6 5 34 34 H 1.08994 * 109.47109 * 299.99719 * 8 7 6 35 35 H 1.08998 * 109.47196 * 59.99703 * 8 7 6 36 36 H 1.08998 * 109.47106 * 60.00350 * 11 10 9 37 37 H 1.09007 * 109.46980 * 179.97438 * 11 10 9 38 38 H 1.08996 * 109.47531 * 299.99979 * 11 10 9 39 39 H 1.09001 * 109.47247 * 60.00148 * 12 10 9 40 40 H 1.09002 * 109.47148 * 179.97438 * 12 10 9 41 41 H 1.08998 * 109.47522 * 299.99865 * 12 10 9 42 42 H 1.09002 * 109.47409 * 60.00647 * 14 13 10 43 43 H 1.09006 * 109.46826 * 179.97438 * 14 13 10 44 44 H 1.08993 * 109.47149 * 299.99695 * 14 13 10 45 45 H 1.09002 * 109.47255 * 59.99865 * 15 13 10 46 46 H 1.09006 * 109.46947 * 180.02562 * 15 13 10 47 47 H 1.09001 * 109.47109 * 299.99711 * 15 13 10 48 48 H 1.09007 * 109.47007 * 60.00550 * 16 13 10 49 49 H 1.08998 * 109.47006 * 179.97438 * 16 13 10 50 50 H 1.08996 * 109.47604 * 300.00099 * 16 13 10 51 51 H 1.07998 * 120.02558 * 180.27526 * 17 4 3 52 52 H 1.08002 * 119.97507 * 179.79516 * 18 17 4 53 53 H 1.08999 * 109.47024 * 224.99985 * 20 19 18 54 54 H 0.96697 * 113.99762 * 299.99830 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5845 1.1959 0.0005 5 8 4.2657 2.3718 0.0011 6 6 5.6927 2.2949 0.0010 7 6 6.2795 3.7079 0.0023 8 6 7.8073 3.6256 0.0029 9 8 8.3554 4.9454 0.0035 10 14 9.9859 4.9865 0.0049 11 6 10.6276 4.1241 1.5264 12 6 10.6301 4.1244 -1.5158 13 6 10.5624 6.7581 0.0063 14 6 10.0333 7.4655 1.2555 15 6 12.0918 6.7967 0.0069 16 6 10.0354 7.4669 -1.2430 17 6 4.2752 -0.0071 0.0068 18 6 3.5804 -1.2013 0.0019 19 6 2.1978 -1.1980 0.0010 20 6 1.4425 -2.5020 0.0015 21 8 0.9011 -2.7383 1.3027 22 14 2.5996 -3.8901 -0.4513 23 1 3.7037 -3.9573 0.5395 24 1 1.8554 -5.1751 -0.4501 25 1 3.1622 -3.6444 -1.8034 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5135 29 1 1.6570 2.1318 -0.0004 30 1 6.0278 1.7619 0.8908 31 1 6.0279 1.7627 -0.8892 32 1 5.9444 4.2413 -0.8872 33 1 5.9443 4.2398 0.8927 34 1 8.1420 3.0924 0.8926 35 1 8.1428 3.0936 -0.8873 36 1 10.2904 3.0875 1.5260 37 1 11.7173 4.1512 1.5271 38 1 10.2507 4.6284 2.4162 39 1 10.2546 4.6290 -2.4061 40 1 11.7197 4.1523 -1.5152 41 1 10.2928 3.0879 -1.5163 42 1 10.4088 6.9606 2.1456 43 1 10.3709 8.5020 1.2566 44 1 8.9437 7.4380 1.2546 45 1 12.4684 6.2927 -0.8832 46 1 12.4292 7.8332 0.0082 47 1 12.4677 6.2916 0.8967 48 1 8.9456 7.4394 -1.2438 49 1 10.3723 8.5035 -1.2419 50 1 10.4122 6.9629 -2.1329 51 1 5.3552 -0.0102 0.0117 52 1 4.1176 -2.1382 0.0034 53 1 0.6321 -2.4527 -0.7257 54 1 1.5671 -2.7941 2.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13420936_18527724.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:33:30 Heat of formation + Delta-G solvation = -161.663516 kcal Electronic energy + Delta-G solvation = -27353.573451 eV Core-core repulsion = 23606.284804 eV Total energy + Delta-G solvation = -3747.288647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.203 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.36052 -39.50874 -38.28755 -37.16443 -36.87948 -33.78130 -33.53655 -31.65898 -29.50125 -29.14908 -28.38373 -27.90684 -27.43232 -26.72522 -25.97785 -23.49974 -22.61113 -21.63231 -20.46461 -18.83341 -18.41128 -17.77686 -17.54220 -17.13778 -16.62826 -16.22851 -16.04812 -15.93810 -15.73689 -15.22055 -14.97899 -14.91997 -14.78037 -14.47860 -14.38755 -14.16427 -14.03382 -13.92240 -13.66842 -13.53096 -13.49516 -13.30399 -13.03336 -13.01808 -12.97493 -12.95235 -12.66602 -12.59325 -12.43905 -12.23022 -12.12714 -11.90708 -11.85659 -11.75394 -11.68347 -11.46893 -11.46829 -11.38128 -10.43403 -10.36454 -10.12448 -9.77130 -9.13702 0.32126 0.34508 1.15951 1.29539 1.39618 1.51874 1.67883 1.90634 1.98653 2.10610 2.44541 2.66679 3.50705 3.66016 3.75380 3.79679 3.85718 3.93779 3.96504 4.07629 4.08079 4.15359 4.16491 4.24272 4.26430 4.39228 4.42335 4.43562 4.60122 4.63466 4.64034 4.65893 4.66464 4.71147 4.77003 4.81649 4.84446 4.95197 4.95236 4.95935 5.02145 5.06587 5.06765 5.12966 5.16236 5.29508 5.29771 5.33780 5.37123 5.37199 5.46271 5.48832 5.53950 5.62733 5.76737 6.40874 6.57188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.015 4.015 3 C -0.154 4.154 4 C 0.142 3.858 5 O -0.311 6.311 6 C 0.058 3.942 7 C -0.123 4.123 8 C 0.090 3.910 9 O -0.623 6.623 10 Si 1.288 2.712 11 C -0.511 4.511 12 C -0.511 4.511 13 C -0.375 4.375 14 C -0.134 4.134 15 C -0.137 4.137 16 C -0.134 4.134 17 C -0.212 4.212 18 C -0.082 4.082 19 C -0.161 4.161 20 C -0.074 4.074 21 O -0.537 6.537 22 Si 0.946 3.054 23 H -0.253 1.253 24 H -0.254 1.254 25 H -0.250 1.250 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.134 0.866 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.130 0.870 52 H 0.125 0.875 53 H 0.117 0.883 54 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.940 -1.085 -0.111 2.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.015 4.015 3 C -0.172 4.172 4 C 0.096 3.904 5 O -0.224 6.224 6 C -0.017 4.017 7 C -0.161 4.161 8 C 0.014 3.986 9 O -0.582 6.582 10 Si 1.419 2.581 11 C -0.613 4.613 12 C -0.613 4.613 13 C -0.418 4.418 14 C -0.191 4.191 15 C -0.194 4.194 16 C -0.192 4.192 17 C -0.230 4.230 18 C -0.100 4.100 19 C -0.162 4.162 20 C -0.185 4.185 21 O -0.342 6.342 22 Si 0.770 3.230 23 H -0.178 1.178 24 H -0.178 1.178 25 H -0.174 1.174 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.152 0.848 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.148 0.852 52 H 0.142 0.858 53 H 0.134 0.866 54 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.639 -1.388 -0.673 2.251 hybrid contribution 1.159 0.156 0.387 1.232 sum 2.798 -1.232 -0.287 3.071 Atomic orbital electron populations 1.20868 0.90194 1.03006 1.03248 1.19550 0.96336 0.91111 0.94526 1.20365 0.90824 0.98814 1.07215 1.18990 0.91745 0.84509 0.95133 1.86062 1.19875 1.28132 1.88348 1.22716 0.78538 0.98648 1.01832 1.21521 0.93751 0.95273 1.05557 1.21794 0.93688 0.82274 1.00832 1.85335 1.49461 1.31920 1.91514 0.76708 0.51212 0.65103 0.65075 1.27037 1.07432 1.08475 1.18380 1.27037 1.07453 1.08474 1.18365 1.25782 0.99894 1.17802 0.98366 1.21514 1.01096 1.00423 0.96112 1.21557 0.93888 1.02394 1.01552 1.21514 1.01107 1.00415 0.96114 1.21149 1.00284 0.91921 1.09665 1.20885 0.93535 0.97874 0.97735 1.20025 0.93394 0.95634 1.07116 1.24866 1.04707 0.99606 0.89279 1.86514 1.37042 1.94542 1.16140 0.85750 0.78018 0.78094 0.81162 1.17765 1.17764 1.17363 0.90198 0.91428 0.90760 0.84849 0.91607 0.91591 0.89573 0.89578 0.92381 0.92387 0.91522 0.90663 0.90816 0.90821 0.90662 0.91514 0.92704 0.92761 0.92129 0.92512 0.92468 0.92519 0.92138 0.92760 0.92700 0.85225 0.85758 0.86559 0.77795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.02 9.54 36.00 0.34 0.36 16 2 C -0.01 -0.02 5.88 -104.65 -0.62 -0.63 16 3 C -0.15 -0.28 9.64 -39.43 -0.38 -0.66 16 4 C 0.14 0.28 6.69 -39.21 -0.26 0.01 16 5 O -0.31 -0.58 10.14 -19.41 -0.20 -0.78 16 6 C 0.06 -0.06 4.74 37.16 0.18 0.12 16 7 C -0.12 0.12 5.95 -26.73 -0.16 -0.04 16 8 C 0.09 -0.14 5.12 37.16 0.19 0.05 16 9 O -0.62 0.08 8.56 -35.23 -0.30 -0.22 16 10 Si 1.29 -1.83 8.45 -169.99 -1.44 -3.27 16 11 C -0.51 0.59 8.50 101.05 0.86 1.45 16 12 C -0.51 0.58 8.50 101.05 0.86 1.44 16 13 C -0.37 0.19 0.53 -90.62 -0.05 0.14 16 14 C -0.13 0.01 7.85 37.16 0.29 0.30 16 15 C -0.14 0.11 7.85 37.16 0.29 0.40 16 16 C -0.13 0.01 7.84 37.16 0.29 0.30 16 17 C -0.21 -0.17 9.04 -39.43 -0.36 -0.52 16 18 C -0.08 -0.05 8.65 -39.60 -0.34 -0.39 16 19 C -0.16 -0.13 5.26 -104.60 -0.55 -0.68 16 20 C -0.07 0.02 2.04 36.00 0.07 0.10 16 21 O -0.54 -0.10 12.81 -35.23 -0.45 -0.55 16 22 Si 0.95 -0.50 25.49 -169.99 -4.33 -4.83 16 23 H -0.25 0.16 6.73 56.52 0.38 0.54 16 24 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 25 H -0.25 -0.08 7.11 56.52 0.40 0.33 16 26 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 27 H 0.07 -0.07 8.08 -51.93 -0.42 -0.49 16 28 H 0.07 -0.04 6.23 -51.92 -0.32 -0.37 16 29 H 0.13 0.12 8.06 -52.49 -0.42 -0.30 16 30 H 0.07 -0.15 7.65 -51.93 -0.40 -0.54 16 31 H 0.07 -0.14 7.68 -51.93 -0.40 -0.54 16 32 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 34 H 0.06 -0.18 7.21 -51.93 -0.37 -0.55 16 35 H 0.06 -0.18 7.21 -51.93 -0.37 -0.55 16 36 H 0.07 -0.11 7.48 -51.93 -0.39 -0.49 16 37 H 0.07 -0.10 7.79 -51.93 -0.40 -0.51 16 38 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 39 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 40 H 0.07 -0.10 7.79 -51.93 -0.40 -0.51 16 41 H 0.07 -0.11 7.48 -51.93 -0.39 -0.49 16 42 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 43 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 44 H 0.06 0.01 7.96 -51.93 -0.41 -0.40 16 45 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 46 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 47 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 48 H 0.06 0.01 7.97 -51.93 -0.41 -0.40 16 49 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 50 H 0.05 -0.04 7.80 -51.93 -0.40 -0.44 16 51 H 0.13 -0.17 6.30 -52.49 -0.33 -0.50 16 52 H 0.12 -0.11 4.88 -52.49 -0.26 -0.36 16 53 H 0.12 -0.13 6.49 -51.93 -0.34 -0.46 16 54 H 0.38 -1.04 8.70 45.56 0.40 -0.65 16 LS Contribution 420.57 15.07 6.34 6.34 Total: 0.00 -4.87 420.57 -9.15 -14.03 By element: Atomic # 1 Polarization: -3.04 SS G_CDS: -9.43 Total: -12.47 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 0.66 Total: 1.75 kcal Atomic # 8 Polarization: -0.59 SS G_CDS: -0.95 Total: -1.54 kcal Atomic # 14 Polarization: -2.33 SS G_CDS: -5.77 Total: -8.10 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -4.87 -9.15 -14.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13420936_18527724.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.637 kcal (2) G-P(sol) polarization free energy of solvation -4.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds