Wall clock time and date at job start Tue Mar 9 2021 14:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38121 * 119.97404 * 2 1 4 4 C 1.38752 * 119.94891 * 179.97438 * 3 2 1 5 5 O 1.35896 * 120.05890 * 180.02562 * 4 3 2 6 6 C 1.42901 * 117.00083 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47050 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47093 * 179.97438 * 7 6 5 9 9 O 1.42905 * 109.47021 * 179.97438 * 8 7 6 10 10 Si 1.63105 * 113.99905 * 179.97438 * 9 8 7 11 11 C 1.86302 * 109.47065 * 300.00095 * 10 9 8 12 12 C 1.86296 * 109.47002 * 60.00039 * 10 9 8 13 13 C 1.86303 * 109.47109 * 180.02562 * 10 9 8 14 14 C 1.53002 * 109.46814 * 59.99951 * 13 10 9 15 15 C 1.52996 * 109.46836 * 180.02562 * 13 10 9 16 16 C 1.52997 * 109.46951 * 299.99850 * 13 10 9 17 17 C 1.38717 * 119.88597 * 359.72795 * 4 3 2 18 18 C 1.38163 * 119.94349 * 0.50633 * 17 4 3 19 19 C 1.38251 * 120.05527 * 359.50941 * 18 17 4 20 20 C 1.50695 * 119.94233 * 180.25730 * 19 18 17 21 21 O 1.42900 * 109.47207 * 105.00432 * 20 19 18 22 22 Si 1.86298 * 109.47528 * 345.00183 * 20 19 18 23 23 H 1.48505 * 109.47145 * 59.99891 * 22 20 19 24 24 H 1.48492 * 109.47422 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46937 * 300.00363 * 22 20 19 26 26 H 1.08998 * 109.47220 * 270.02008 * 1 2 3 27 27 H 1.08995 * 109.47386 * 30.02488 * 1 2 3 28 28 H 1.09009 * 109.46901 * 150.02351 * 1 2 3 29 29 H 1.07997 * 120.02529 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.46832 * 299.99699 * 6 5 4 31 31 H 1.08998 * 109.47360 * 59.99984 * 6 5 4 32 32 H 1.09000 * 109.47142 * 300.00051 * 7 6 5 33 33 H 1.08998 * 109.47342 * 59.99618 * 7 6 5 34 34 H 1.08994 * 109.47109 * 299.99719 * 8 7 6 35 35 H 1.08998 * 109.47196 * 59.99703 * 8 7 6 36 36 H 1.08998 * 109.47106 * 60.00350 * 11 10 9 37 37 H 1.09007 * 109.46980 * 179.97438 * 11 10 9 38 38 H 1.08996 * 109.47531 * 299.99979 * 11 10 9 39 39 H 1.09001 * 109.47247 * 60.00148 * 12 10 9 40 40 H 1.09002 * 109.47148 * 179.97438 * 12 10 9 41 41 H 1.08998 * 109.47522 * 299.99865 * 12 10 9 42 42 H 1.09002 * 109.47409 * 60.00647 * 14 13 10 43 43 H 1.09006 * 109.46826 * 179.97438 * 14 13 10 44 44 H 1.08993 * 109.47149 * 299.99695 * 14 13 10 45 45 H 1.09002 * 109.47255 * 59.99865 * 15 13 10 46 46 H 1.09006 * 109.46947 * 180.02562 * 15 13 10 47 47 H 1.09001 * 109.47109 * 299.99711 * 15 13 10 48 48 H 1.09007 * 109.47007 * 60.00550 * 16 13 10 49 49 H 1.08998 * 109.47006 * 179.97438 * 16 13 10 50 50 H 1.08996 * 109.47604 * 300.00099 * 16 13 10 51 51 H 1.07998 * 120.02558 * 180.27526 * 17 4 3 52 52 H 1.08002 * 119.97507 * 179.79516 * 18 17 4 53 53 H 1.08999 * 109.47024 * 224.99985 * 20 19 18 54 54 H 0.96697 * 113.99762 * 299.99830 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5845 1.1959 0.0005 5 8 4.2657 2.3718 0.0011 6 6 5.6927 2.2949 0.0010 7 6 6.2795 3.7079 0.0023 8 6 7.8073 3.6256 0.0029 9 8 8.3554 4.9454 0.0035 10 14 9.9859 4.9865 0.0049 11 6 10.6276 4.1241 1.5264 12 6 10.6301 4.1244 -1.5158 13 6 10.5624 6.7581 0.0063 14 6 10.0333 7.4655 1.2555 15 6 12.0918 6.7967 0.0069 16 6 10.0354 7.4669 -1.2430 17 6 4.2752 -0.0071 0.0068 18 6 3.5804 -1.2013 0.0019 19 6 2.1978 -1.1980 0.0010 20 6 1.4425 -2.5020 0.0015 21 8 0.9011 -2.7383 1.3027 22 14 2.5996 -3.8901 -0.4513 23 1 3.7037 -3.9573 0.5395 24 1 1.8554 -5.1751 -0.4501 25 1 3.1622 -3.6444 -1.8034 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5135 29 1 1.6570 2.1318 -0.0004 30 1 6.0278 1.7619 0.8908 31 1 6.0279 1.7627 -0.8892 32 1 5.9444 4.2413 -0.8872 33 1 5.9443 4.2398 0.8927 34 1 8.1420 3.0924 0.8926 35 1 8.1428 3.0936 -0.8873 36 1 10.2904 3.0875 1.5260 37 1 11.7173 4.1512 1.5271 38 1 10.2507 4.6284 2.4162 39 1 10.2546 4.6290 -2.4061 40 1 11.7197 4.1523 -1.5152 41 1 10.2928 3.0879 -1.5163 42 1 10.4088 6.9606 2.1456 43 1 10.3709 8.5020 1.2566 44 1 8.9437 7.4380 1.2546 45 1 12.4684 6.2927 -0.8832 46 1 12.4292 7.8332 0.0082 47 1 12.4677 6.2916 0.8967 48 1 8.9456 7.4394 -1.2438 49 1 10.3723 8.5035 -1.2419 50 1 10.4122 6.9629 -2.1329 51 1 5.3552 -0.0102 0.0117 52 1 4.1176 -2.1382 0.0034 53 1 0.6321 -2.4527 -0.7257 54 1 1.5671 -2.7941 2.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13420936_18527724.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:33:29 Heat of formation + Delta-G solvation = -152.410932 kcal Electronic energy + Delta-G solvation = -27353.172229 eV Core-core repulsion = 23606.284804 eV Total energy + Delta-G solvation = -3746.887425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.203 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.37395 -39.49866 -38.19076 -37.14562 -36.83176 -33.72458 -33.52934 -31.66391 -29.38342 -29.06367 -28.36643 -27.84280 -27.38295 -26.65910 -25.93667 -23.47899 -22.55580 -21.61791 -20.41824 -18.83702 -18.38143 -17.69208 -17.45893 -17.13551 -16.61067 -16.16013 -15.98763 -15.89532 -15.70525 -15.15173 -14.97153 -14.86634 -14.75390 -14.46034 -14.37024 -14.15642 -13.94131 -13.87465 -13.64379 -13.44159 -13.37700 -13.17682 -12.99506 -12.96054 -12.94835 -12.87501 -12.63529 -12.53024 -12.39407 -12.17992 -12.13181 -11.87683 -11.79559 -11.70548 -11.63240 -11.43476 -11.35136 -11.29107 -10.33219 -10.31222 -10.05889 -9.80994 -9.17219 0.28478 0.30210 1.20693 1.43443 1.44255 1.54896 1.78366 1.92915 2.12916 2.16297 2.54009 2.63083 3.59112 3.68516 3.84185 3.88235 3.89111 4.01517 4.10083 4.12025 4.12221 4.18388 4.31650 4.35897 4.38993 4.45132 4.46481 4.48222 4.66293 4.72486 4.74443 4.76035 4.78195 4.79476 4.82195 4.82350 4.86599 4.98352 4.99648 5.04328 5.05549 5.08791 5.09109 5.15919 5.21579 5.28612 5.31487 5.34550 5.40471 5.44383 5.54593 5.60190 5.60951 5.64598 5.76467 6.40513 6.74755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.025 4.025 3 C -0.170 4.170 4 C 0.128 3.872 5 O -0.329 6.329 6 C 0.053 3.947 7 C -0.121 4.121 8 C 0.080 3.920 9 O -0.641 6.641 10 Si 1.317 2.683 11 C -0.517 4.517 12 C -0.518 4.518 13 C -0.385 4.385 14 C -0.137 4.137 15 C -0.140 4.140 16 C -0.137 4.137 17 C -0.215 4.215 18 C -0.089 4.089 19 C -0.166 4.166 20 C -0.074 4.074 21 O -0.550 6.550 22 Si 0.979 3.021 23 H -0.247 1.247 24 H -0.276 1.276 25 H -0.261 1.261 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.047 0.953 50 H 0.061 0.939 51 H 0.150 0.850 52 H 0.139 0.861 53 H 0.121 0.879 54 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.736 -2.228 -0.036 3.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.025 4.025 3 C -0.189 4.189 4 C 0.082 3.918 5 O -0.244 6.244 6 C -0.021 4.021 7 C -0.158 4.158 8 C 0.005 3.995 9 O -0.601 6.601 10 Si 1.447 2.553 11 C -0.619 4.619 12 C -0.619 4.619 13 C -0.427 4.427 14 C -0.194 4.194 15 C -0.198 4.198 16 C -0.194 4.194 17 C -0.233 4.233 18 C -0.106 4.106 19 C -0.167 4.167 20 C -0.184 4.184 21 O -0.357 6.357 22 Si 0.804 3.196 23 H -0.171 1.171 24 H -0.201 1.201 25 H -0.185 1.185 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.151 0.849 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.080 0.920 51 H 0.168 0.832 52 H 0.157 0.843 53 H 0.139 0.861 54 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.447 -2.510 -0.586 3.554 hybrid contribution 0.901 0.539 0.367 1.112 sum 3.348 -1.971 -0.219 3.891 Atomic orbital electron populations 1.20876 0.89513 1.03525 1.03252 1.19741 0.97006 0.91183 0.94614 1.20524 0.91273 0.99149 1.07921 1.19159 0.91940 0.84998 0.95672 1.86035 1.21349 1.28486 1.88492 1.22892 0.77262 0.98777 1.03207 1.21483 0.94544 0.95282 1.04518 1.21997 0.92988 0.82005 1.02492 1.85324 1.50185 1.32878 1.91699 0.76173 0.50537 0.63783 0.64811 1.27089 1.07703 1.08956 1.18175 1.27090 1.07726 1.08952 1.18166 1.25960 1.00201 1.18886 0.97700 1.21542 1.00808 1.00263 0.96815 1.21600 0.93671 1.02156 1.02328 1.21542 1.00817 1.00255 0.96818 1.21402 1.01407 0.91470 1.09032 1.21119 0.93601 0.98501 0.97400 1.20205 0.93751 0.95885 1.06833 1.24927 1.04964 0.99193 0.89312 1.86484 1.38055 1.94493 1.16673 0.85283 0.77402 0.76434 0.80466 1.17130 1.20099 1.18503 0.90386 0.90862 0.90306 0.84919 0.90151 0.90174 0.90644 0.90639 0.90698 0.90723 0.90761 0.90364 0.91237 0.91249 0.90362 0.90759 0.92038 0.93418 0.92641 0.91748 0.93237 0.91753 0.92652 0.93417 0.92038 0.83206 0.84310 0.86100 0.76420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.01 9.54 71.23 0.68 0.67 16 2 C -0.03 -0.07 5.88 -19.88 -0.12 -0.19 16 3 C -0.17 -0.76 9.64 22.36 0.22 -0.55 16 4 C 0.13 0.54 6.69 22.51 0.15 0.69 16 5 O -0.33 -1.39 10.14 -92.38 -0.94 -2.33 16 6 C 0.05 -0.13 4.74 71.98 0.34 0.21 16 7 C -0.12 0.20 5.95 30.59 0.18 0.38 16 8 C 0.08 -0.32 5.12 71.98 0.37 0.05 16 9 O -0.64 0.25 8.56 -148.98 -1.28 -1.02 16 10 Si 1.32 -4.34 8.45 68.60 0.58 -3.76 16 11 C -0.52 1.67 8.50 113.37 0.96 2.64 16 12 C -0.52 1.66 8.50 113.37 0.96 2.62 16 13 C -0.39 0.26 0.53 -10.80 -0.01 0.25 16 14 C -0.14 -0.08 7.85 71.98 0.56 0.49 16 15 C -0.14 0.23 7.85 71.98 0.56 0.79 16 16 C -0.14 -0.08 7.84 71.98 0.56 0.49 16 17 C -0.21 -0.20 9.04 22.37 0.20 0.00 16 18 C -0.09 -0.05 8.65 22.26 0.19 0.15 16 19 C -0.17 -0.24 5.26 -19.85 -0.10 -0.35 16 20 C -0.07 0.07 2.04 71.23 0.15 0.21 16 21 O -0.55 -0.03 12.81 -148.98 -1.91 -1.93 16 22 Si 0.98 -1.53 25.49 68.60 1.75 0.22 16 23 H -0.25 0.66 6.73 99.48 0.67 1.33 16 24 H -0.28 -0.56 7.11 99.48 0.71 0.15 16 25 H -0.26 -0.04 7.11 99.48 0.71 0.67 16 26 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.07 -0.10 8.08 -2.39 -0.02 -0.12 16 28 H 0.08 -0.08 6.23 -2.38 -0.01 -0.10 16 29 H 0.13 0.45 8.06 -2.91 -0.02 0.43 16 30 H 0.08 -0.44 7.65 -2.39 -0.02 -0.46 16 31 H 0.08 -0.44 7.68 -2.39 -0.02 -0.45 16 32 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.07 0.01 8.14 -2.39 -0.02 0.00 16 34 H 0.07 -0.56 7.21 -2.39 -0.02 -0.58 16 35 H 0.07 -0.55 7.21 -2.39 -0.02 -0.57 16 36 H 0.07 -0.35 7.48 -2.39 -0.02 -0.37 16 37 H 0.08 -0.29 7.79 -2.38 -0.02 -0.31 16 38 H 0.07 -0.15 7.79 -2.39 -0.02 -0.17 16 39 H 0.07 -0.15 7.79 -2.39 -0.02 -0.17 16 40 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 41 H 0.07 -0.35 7.48 -2.39 -0.02 -0.36 16 42 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 43 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 44 H 0.05 0.08 7.96 -2.39 -0.02 0.06 16 45 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 46 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 47 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 48 H 0.05 0.08 7.97 -2.38 -0.02 0.06 16 49 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 50 H 0.06 -0.06 7.80 -2.39 -0.02 -0.08 16 51 H 0.15 -0.61 6.30 -2.91 -0.02 -0.63 16 52 H 0.14 -0.42 4.88 -2.91 -0.01 -0.44 16 53 H 0.12 -0.28 6.49 -2.39 -0.02 -0.29 16 54 H 0.39 -2.32 8.70 -74.06 -0.64 -2.97 16 Total: 0.00 -11.42 420.57 5.00 -6.42 By element: Atomic # 1 Polarization: -7.08 SS G_CDS: 0.92 Total: -6.16 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 5.87 Total: 8.56 kcal Atomic # 8 Polarization: -1.17 SS G_CDS: -4.12 Total: -5.29 kcal Atomic # 14 Polarization: -5.87 SS G_CDS: 2.33 Total: -3.54 kcal Total: -11.42 5.00 -6.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13420936_18527724.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.993 kcal (2) G-P(sol) polarization free energy of solvation -11.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds