Wall clock time and date at job start Tue Mar 9 2021 14:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47166 * 2 1 4 4 C 1.53000 * 109.47562 * 239.99617 * 2 1 3 5 5 Si 1.86301 * 109.47037 * 119.99813 * 2 1 3 6 6 C 1.86302 * 109.47307 * 300.00197 * 5 2 1 7 7 C 1.86297 * 109.47467 * 180.02562 * 5 2 1 8 8 O 1.63104 * 109.47181 * 60.00231 * 5 2 1 9 9 C 1.42897 * 114.00207 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47335 * 179.97438 * 9 8 5 11 11 O 1.42897 * 109.46807 * 64.99738 * 10 9 8 12 12 C 1.35910 * 116.99784 * 179.97438 * 11 10 9 13 13 C 1.39084 * 120.47032 * 0.02739 * 12 11 10 14 14 C 1.38657 * 118.36721 * 179.97438 * 13 12 11 15 15 Br 1.89098 * 120.39875 * 179.97438 * 14 13 12 16 16 C 1.38313 * 119.20521 * 359.97438 * 14 13 12 17 17 N 1.31871 * 120.87065 * 359.74443 * 16 14 13 18 18 C 1.31811 * 121.78917 * 0.52891 * 17 16 14 19 19 C 1.50698 * 119.64567 * 179.75510 * 18 17 16 20 20 O 1.42905 * 109.47321 * 149.72098 * 19 18 17 21 21 Si 1.86295 * 109.47516 * 29.71988 * 19 18 17 22 22 H 1.48503 * 109.47274 * 180.02562 * 21 19 18 23 23 H 1.48506 * 109.47357 * 300.00270 * 21 19 18 24 24 H 1.48503 * 109.47244 * 60.00124 * 21 19 18 25 25 H 1.08999 * 109.46988 * 300.00068 * 1 2 3 26 26 H 1.08996 * 109.46404 * 60.00533 * 1 2 3 27 27 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47377 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47441 * 299.99736 * 3 2 1 30 30 H 1.09004 * 109.47612 * 59.99829 * 3 2 1 31 31 H 1.09003 * 109.47323 * 300.00385 * 4 2 1 32 32 H 1.09000 * 109.46587 * 60.00035 * 4 2 1 33 33 H 1.08999 * 109.47357 * 179.97438 * 4 2 1 34 34 H 1.08990 * 109.47550 * 179.97438 * 6 5 2 35 35 H 1.08998 * 109.47180 * 300.00346 * 6 5 2 36 36 H 1.09010 * 109.47068 * 59.99447 * 6 5 2 37 37 H 1.08998 * 109.47059 * 300.00090 * 7 5 2 38 38 H 1.09005 * 109.47308 * 59.99517 * 7 5 2 39 39 H 1.09000 * 109.47571 * 180.02562 * 7 5 2 40 40 H 1.09003 * 109.47385 * 59.99695 * 9 8 5 41 41 H 1.09003 * 109.47085 * 300.00182 * 9 8 5 42 42 H 1.09002 * 109.46795 * 305.00219 * 10 9 8 43 43 H 1.08998 * 109.47402 * 185.00002 * 10 9 8 44 44 H 1.07993 * 120.81176 * 359.95289 * 13 12 11 45 45 H 1.08001 * 119.56620 * 180.02562 * 16 14 13 46 46 H 1.09001 * 109.47122 * 269.72197 * 19 18 17 47 47 H 0.96696 * 114.00036 * 299.99741 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8776 1.5217 8 8 1.6074 -2.4160 1.5212 9 6 2.0285 -3.1813 2.6520 10 6 1.4627 -4.5990 2.5477 11 8 2.0311 -5.2564 1.4134 12 6 1.6317 -6.5336 1.1762 13 6 0.7093 -7.1513 2.0142 14 6 0.3320 -8.4552 1.7312 15 35 -0.9174 -9.3503 2.8329 16 6 0.8805 -9.0934 0.6335 17 7 1.7488 -8.4764 -0.1439 18 6 2.1371 -7.2394 0.0937 19 6 3.1363 -6.5826 -0.8235 20 8 2.8997 -5.1736 -0.8551 21 14 2.9557 -7.2812 -2.5410 22 1 3.9408 -6.6344 -3.4447 23 1 3.2016 -8.7454 -2.5083 24 1 1.5811 -7.0212 -3.0392 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6768 -1.7490 -1.2492 32 1 1.6768 -0.2075 -2.1391 33 1 3.1301 -0.7209 -1.2494 34 1 1.8929 -0.5140 3.9323 35 1 1.8932 1.0277 3.0423 36 1 0.4399 0.0001 3.0423 37 1 4.3777 -1.3912 0.6318 38 1 4.3770 0.1502 1.5218 39 1 4.3773 -1.3918 2.4115 40 1 1.6637 -2.7112 3.5653 41 1 3.1174 -3.2251 2.6760 42 1 0.3797 -4.5505 2.4346 43 1 1.7091 -5.1560 3.4517 44 1 0.2975 -6.6283 2.8645 45 1 0.5904 -10.1089 0.4075 46 1 4.1453 -6.7735 -0.4579 47 1 2.0190 -4.9297 -1.1712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13445640_10264010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:34:16 Heat of formation + Delta-G solvation = -123.505075 kcal Electronic energy + Delta-G solvation = -27359.997010 eV Core-core repulsion = 23520.194362 eV Total energy + Delta-G solvation = -3839.802648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 391.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.00931 -39.53275 -37.79634 -37.54270 -36.77583 -34.37566 -32.34822 -31.23132 -30.41562 -29.27341 -29.00618 -27.80025 -27.32468 -27.03709 -25.23017 -23.44905 -22.75858 -20.36703 -19.38952 -18.58030 -18.18583 -17.96449 -17.12978 -16.75899 -16.14386 -15.99321 -15.71759 -15.57273 -15.42287 -14.99127 -14.80370 -14.73134 -14.60221 -14.50245 -14.06669 -13.87054 -13.51402 -13.45985 -13.31377 -13.14036 -12.90422 -12.89164 -12.70834 -12.63006 -12.41931 -12.33997 -12.19864 -12.09555 -11.91138 -11.76796 -11.64527 -11.57364 -11.45880 -11.21792 -10.98135 -10.55390 -10.32108 -10.25118 -10.00482 -9.37483 -0.40722 0.01250 0.35415 1.21098 1.52191 1.57545 1.63575 1.84637 1.99000 2.05220 2.19476 2.42065 2.53160 3.04734 3.29536 3.61047 3.70861 3.76984 3.92004 4.10735 4.14446 4.17495 4.18070 4.31623 4.44527 4.51617 4.52537 4.60821 4.69086 4.77520 4.78433 4.82160 4.83434 4.84154 4.86275 4.88547 5.04898 5.12759 5.13826 5.14559 5.25053 5.38499 5.46562 5.47307 5.54946 5.63902 5.69498 6.15387 6.56202 6.76223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.384 4.384 3 C -0.141 4.141 4 C -0.135 4.135 5 Si 1.326 2.674 6 C -0.519 4.519 7 C -0.521 4.521 8 O -0.630 6.630 9 C 0.079 3.921 10 C 0.038 3.962 11 O -0.274 6.274 12 C 0.110 3.890 13 C -0.141 4.141 14 C -0.109 4.109 15 Br -0.020 7.020 16 C 0.087 3.913 17 N -0.456 5.456 18 C 0.064 3.936 19 C -0.061 4.061 20 O -0.524 6.524 21 Si 1.004 2.996 22 H -0.270 1.270 23 H -0.259 1.259 24 H -0.272 1.272 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.171 0.829 45 H 0.183 0.817 46 H 0.135 0.865 47 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 1.685 4.032 4.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.426 4.426 3 C -0.199 4.199 4 C -0.192 4.192 5 Si 1.455 2.545 6 C -0.621 4.621 7 C -0.622 4.622 8 O -0.589 6.589 9 C 0.004 3.996 10 C -0.037 4.037 11 O -0.185 6.185 12 C 0.060 3.940 13 C -0.169 4.169 14 C -0.190 4.190 15 Br 0.065 6.935 16 C -0.072 4.072 17 N -0.168 5.168 18 C -0.076 4.076 19 C -0.172 4.172 20 O -0.329 6.329 21 Si 0.828 3.172 22 H -0.195 1.195 23 H -0.184 1.184 24 H -0.197 1.197 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.189 0.811 45 H 0.200 0.800 46 H 0.153 0.847 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.402 0.580 2.872 2.957 hybrid contribution -0.589 1.059 0.888 1.502 sum -0.991 1.639 3.760 4.220 Atomic orbital electron populations 1.21528 0.94200 1.01809 1.01706 1.25951 1.00395 1.02810 1.13429 1.21607 1.01144 0.94979 1.02121 1.21518 1.00792 1.00226 0.96693 0.76012 0.61881 0.52731 0.63872 1.27111 1.06995 1.09782 1.18166 1.27169 1.26111 1.04523 1.04367 1.85385 1.79185 1.46346 1.48017 1.22284 0.99866 0.89289 0.88204 1.23429 0.99642 0.92702 0.87956 1.86449 1.63650 1.21051 1.47343 1.19748 0.93867 0.86430 0.93946 1.21959 0.98715 0.94463 1.01775 1.22898 1.00661 0.96618 0.98852 1.96840 1.54938 1.76825 1.64930 1.22925 0.93082 1.01032 0.90129 1.67389 1.11970 1.08441 1.28969 1.21731 0.99760 0.90682 0.95409 1.24815 0.99698 0.85450 1.07267 1.86562 1.38561 1.18394 1.89348 0.84834 0.79344 0.79259 0.73775 1.19458 1.18356 1.19666 0.92069 0.93630 0.92341 0.92085 0.93314 0.91777 0.92090 0.93678 0.92547 0.90672 0.90644 0.90928 0.91583 0.90819 0.91172 0.87997 0.91048 0.89987 0.88635 0.81137 0.80011 0.84715 0.76919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.07 7.85 71.98 0.56 0.63 16 2 C -0.38 0.39 0.53 -10.79 -0.01 0.38 16 3 C -0.14 0.18 7.85 71.98 0.56 0.75 16 4 C -0.14 -0.09 7.85 71.98 0.56 0.47 16 5 Si 1.33 -4.93 8.45 68.60 0.58 -4.35 16 6 C -0.52 2.17 8.50 113.37 0.96 3.14 16 7 C -0.52 0.83 8.50 113.37 0.96 1.79 16 8 O -0.63 1.33 8.52 -144.33 -1.23 0.10 16 9 C 0.08 -0.45 5.50 71.98 0.40 -0.05 16 10 C 0.04 -0.20 5.14 71.98 0.37 0.17 16 11 O -0.27 -0.09 7.84 -67.20 -0.53 -0.62 16 12 C 0.11 0.15 6.56 22.60 0.15 0.30 16 13 C -0.14 0.12 8.90 22.57 0.20 0.32 16 14 C -0.11 -0.07 6.24 22.39 0.14 0.07 16 15 Br -0.02 0.01 33.73 -20.37 -0.69 -0.68 16 16 C 0.09 0.18 10.94 84.70 0.93 1.11 16 17 N -0.46 -2.23 8.36 -183.42 -1.53 -3.76 16 18 C 0.06 0.22 6.09 42.69 0.26 0.48 16 19 C -0.06 -0.11 2.92 71.24 0.21 0.10 16 20 O -0.52 -1.06 10.63 -127.13 -1.35 -2.41 16 21 Si 1.00 3.19 27.16 68.60 1.86 5.06 16 22 H -0.27 -1.25 7.11 99.48 0.71 -0.54 16 23 H -0.26 -1.52 7.11 99.48 0.71 -0.81 16 24 H -0.27 -1.39 7.11 99.48 0.71 -0.68 16 25 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 26 H 0.04 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 28 H 0.06 -0.14 7.79 -2.38 -0.02 -0.16 16 29 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 -0.20 7.79 -2.38 -0.02 -0.22 16 31 H 0.06 0.05 7.97 -2.39 -0.02 0.03 16 32 H 0.04 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.06 0.02 7.79 -2.39 -0.02 0.00 16 34 H 0.07 -0.44 7.48 -2.39 -0.02 -0.46 16 35 H 0.07 -0.30 7.79 -2.39 -0.02 -0.32 16 36 H 0.07 -0.28 7.79 -2.38 -0.02 -0.30 16 37 H 0.06 0.04 7.79 -2.39 -0.02 0.02 16 38 H 0.07 -0.15 7.79 -2.38 -0.02 -0.17 16 39 H 0.07 -0.19 7.48 -2.39 -0.02 -0.20 16 40 H 0.10 -1.12 7.21 -2.39 -0.02 -1.14 16 41 H 0.07 -0.44 7.22 -2.39 -0.02 -0.45 16 42 H 0.08 -0.55 7.70 -2.39 -0.02 -0.57 16 43 H 0.10 -0.92 7.70 -2.39 -0.02 -0.94 16 44 H 0.17 -0.96 6.45 -2.91 -0.02 -0.97 16 45 H 0.18 -0.30 8.06 -2.91 -0.02 -0.33 16 46 H 0.14 -0.04 7.96 -2.39 -0.02 -0.06 16 47 H 0.38 -0.79 8.70 -74.06 -0.64 -1.44 16 Total: 0.00 -11.27 398.04 4.44 -6.82 By element: Atomic # 1 Polarization: -10.88 SS G_CDS: 1.06 Total: -9.82 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.27 Total: 9.66 kcal Atomic # 7 Polarization: -2.23 SS G_CDS: -1.53 Total: -3.76 kcal Atomic # 8 Polarization: 0.18 SS G_CDS: -3.11 Total: -2.93 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: 2.44 Total: 0.71 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.68 kcal Total: -11.27 4.44 -6.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13445640_10264010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.682 kcal (2) G-P(sol) polarization free energy of solvation -11.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds