Wall clock time and date at job start Tue Mar 9 2021 14:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86306 * 109.47147 * 2 1 4 4 C 1.86303 * 109.47092 * 240.00373 * 2 1 3 5 5 C 1.86295 * 109.47327 * 120.00256 * 2 1 3 6 6 O 1.42897 * 109.47015 * 66.12418 * 5 2 1 7 7 C 1.35909 * 117.00308 * 77.84140 * 6 5 2 8 8 C 1.39078 * 120.46514 * 6.20065 * 7 6 5 9 9 C 1.38669 * 118.36362 * 179.97438 * 8 7 6 10 10 Br 1.89101 * 120.39560 * 179.97438 * 9 8 7 11 11 C 1.38302 * 119.20377 * 0.02562 * 9 8 7 12 12 N 1.31868 * 120.87472 * 359.74621 * 11 9 8 13 13 C 1.31815 * 121.78940 * 0.52260 * 12 11 9 14 14 C 1.50696 * 119.64813 * 179.75105 * 13 12 11 15 15 O 1.42899 * 109.47171 * 149.72755 * 14 13 12 16 16 Si 1.86296 * 109.47097 * 29.72724 * 14 13 12 17 17 H 1.48503 * 109.47288 * 179.97438 * 16 14 13 18 18 H 1.48496 * 109.47159 * 299.99732 * 16 14 13 19 19 H 1.48500 * 109.47379 * 60.00002 * 16 14 13 20 20 H 1.09000 * 109.46758 * 299.99677 * 1 2 3 21 21 H 1.09000 * 109.46775 * 59.99352 * 1 2 3 22 22 H 1.08992 * 109.47012 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46915 * 180.02562 * 3 2 1 24 24 H 1.08993 * 109.47460 * 300.00168 * 3 2 1 25 25 H 1.09000 * 109.47028 * 60.00488 * 3 2 1 26 26 H 1.09000 * 109.47027 * 294.74727 * 4 2 1 27 27 H 1.08995 * 109.46875 * 54.74671 * 4 2 1 28 28 H 1.09000 * 109.47011 * 174.75213 * 4 2 1 29 29 H 1.09003 * 109.46903 * 306.12400 * 5 2 1 30 30 H 1.09002 * 109.47339 * 186.12642 * 5 2 1 31 31 H 1.07998 * 120.81963 * 359.97066 * 8 7 6 32 32 H 1.07997 * 119.56225 * 179.97438 * 11 9 8 33 33 H 1.09003 * 109.47229 * 269.72332 * 14 13 12 34 34 H 0.96700 * 114.00312 * 300.00437 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4840 -0.8783 1.5210 6 8 2.1287 -2.2606 1.4513 7 6 2.8832 -3.0517 0.6439 8 6 4.0238 -2.5472 0.0284 9 6 4.7616 -3.3928 -0.7861 10 35 6.3220 -2.7666 -1.6517 11 6 4.3420 -4.6993 -0.9587 12 7 3.2576 -5.1469 -0.3565 13 6 2.5261 -4.3740 0.4214 14 6 1.2927 -4.9342 1.0815 15 8 1.0741 -4.2676 2.3264 16 14 1.5250 -6.7574 1.3858 17 1 0.3098 -7.3095 2.0368 18 1 1.7521 -7.4502 0.0921 19 1 2.6985 -6.9659 2.2716 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 3.5741 1.7565 -0.0005 24 1 2.1207 2.2704 -0.8899 25 1 2.1208 2.2703 0.8900 26 1 2.1995 -1.9294 -1.4755 27 1 2.0459 -0.4214 -2.4086 28 1 3.5699 -0.7974 -1.5694 29 1 2.0340 -0.4316 2.4077 30 1 3.5685 -0.7843 1.5776 31 1 4.3274 -1.5221 0.1811 32 1 4.9120 -5.3627 -1.5921 33 1 0.4313 -4.7812 0.4313 34 1 1.8022 -4.3612 2.9559 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13445640_3095236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:40:10 Heat of formation + Delta-G solvation = -62.020379 kcal Electronic energy + Delta-G solvation = -18025.200251 eV Core-core repulsion = 15128.896447 eV Total energy + Delta-G solvation = -2896.303804 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 319.015 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.10263 -39.26985 -37.77027 -34.44153 -32.26442 -31.20963 -29.87234 -28.58376 -28.54484 -28.08833 -27.01465 -24.03339 -23.17617 -19.36000 -18.59474 -18.14819 -17.21614 -16.97174 -16.06986 -15.68382 -15.41975 -15.13668 -14.80272 -14.50401 -14.29484 -14.02061 -13.96411 -13.78405 -13.56414 -13.42261 -13.37198 -13.21367 -12.76267 -12.52736 -12.26148 -11.99008 -11.80363 -11.57620 -11.19181 -11.07615 -10.98227 -10.95251 -10.48265 -10.18715 -9.23302 -0.39036 -0.00204 0.36305 1.25040 1.31453 1.51910 1.60708 1.62558 1.74279 2.10247 2.20084 2.35555 2.45857 3.03975 3.24495 3.56649 3.63963 3.72895 3.96874 4.10887 4.41925 4.53675 4.54202 4.54722 4.58496 4.58996 4.62468 4.69237 4.72654 4.75823 5.08772 5.30642 5.39629 5.48249 6.03053 6.49439 6.70469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.986 3.014 3 C -0.448 4.448 4 C -0.451 4.451 5 C -0.254 4.254 6 O -0.253 6.253 7 C 0.103 3.897 8 C -0.136 4.136 9 C -0.107 4.107 10 Br -0.025 7.025 11 C 0.097 3.903 12 N -0.437 5.437 13 C 0.075 3.925 14 C -0.069 4.069 15 O -0.521 6.521 16 Si 0.978 3.022 17 H -0.259 1.259 18 H -0.241 1.241 19 H -0.259 1.259 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.154 0.846 32 H 0.171 0.829 33 H 0.129 0.871 34 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 2.465 0.282 2.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.182 2.818 3 C -0.556 4.556 4 C -0.559 4.559 5 C -0.374 4.374 6 O -0.163 6.163 7 C 0.053 3.947 8 C -0.164 4.164 9 C -0.188 4.188 10 Br 0.060 6.940 11 C -0.062 4.062 12 N -0.148 5.148 13 C -0.065 4.065 14 C -0.179 4.179 15 O -0.324 6.324 16 Si 0.798 3.202 17 H -0.183 1.183 18 H -0.164 1.164 19 H -0.183 1.183 20 H 0.090 0.910 21 H 0.089 0.911 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.188 0.812 33 H 0.146 0.854 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.276 1.071 -0.122 1.113 hybrid contribution 0.778 1.426 0.325 1.656 sum 1.054 2.497 0.203 2.718 Atomic orbital electron populations 1.25991 1.19441 1.05050 1.04587 0.79885 0.68997 0.67084 0.65785 1.26059 1.06338 1.18110 1.05083 1.26454 1.06207 1.07967 1.15270 1.28285 1.05555 0.85393 1.18199 1.86339 1.51096 1.18965 1.59890 1.19763 0.90740 0.91790 0.92402 1.21738 0.94806 1.01455 0.98379 1.22793 0.96866 0.97147 1.02031 1.96836 1.31423 1.88318 1.77412 1.22656 0.93259 0.92186 0.98109 1.67392 1.05041 1.35634 1.06722 1.21570 0.98445 0.88695 0.97809 1.24920 0.95974 1.09323 0.87727 1.86572 1.45449 1.76738 1.23652 0.85210 0.79993 0.73173 0.81806 1.18313 1.16389 1.18271 0.91000 0.91059 0.90663 0.91047 0.90561 0.90849 0.91296 0.90593 0.90940 0.86565 0.91117 0.82822 0.81224 0.85384 0.77924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.60 8.65 101.05 0.87 1.47 16 2 Si 0.99 -2.96 11.70 -169.99 -1.99 -4.95 16 3 C -0.45 1.21 8.65 101.05 0.87 2.08 16 4 C -0.45 0.63 7.03 101.05 0.71 1.34 16 5 C -0.25 0.58 5.31 101.05 0.54 1.11 16 6 O -0.25 -0.03 7.53 -42.31 -0.32 -0.35 16 7 C 0.10 0.06 5.03 -39.08 -0.20 -0.13 16 8 C -0.14 0.02 5.50 -39.11 -0.21 -0.20 16 9 C -0.11 -0.04 6.24 -39.40 -0.25 -0.29 16 10 Br -0.02 0.00 33.73 -68.01 -2.29 -2.29 16 11 C 0.10 0.08 10.94 -17.51 -0.19 -0.11 16 12 N -0.44 -0.87 8.36 -9.33 -0.08 -0.94 16 13 C 0.07 0.10 6.09 -82.41 -0.50 -0.40 16 14 C -0.07 -0.03 2.92 36.00 0.11 0.08 16 15 O -0.52 -0.30 10.63 -58.09 -0.62 -0.92 16 16 Si 0.98 0.82 27.16 -169.99 -4.62 -3.80 16 17 H -0.26 -0.42 7.11 56.52 0.40 -0.02 16 18 H -0.24 -0.48 7.11 56.52 0.40 -0.08 16 19 H -0.26 -0.44 7.11 56.52 0.40 -0.03 16 20 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 21 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 22 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 23 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 24 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 25 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 26 H 0.07 0.00 6.25 -51.93 -0.32 -0.33 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.11 6.54 -51.93 -0.34 -0.45 16 29 H 0.12 -0.38 7.96 -51.93 -0.41 -0.80 16 30 H 0.07 -0.23 6.11 -51.93 -0.32 -0.55 16 31 H 0.15 -0.31 4.88 -52.49 -0.26 -0.56 16 32 H 0.17 -0.18 8.06 -52.49 -0.42 -0.60 16 33 H 0.13 -0.07 7.96 -51.93 -0.41 -0.49 16 34 H 0.37 -0.75 8.70 45.56 0.40 -0.36 16 LS Contribution 299.01 15.07 4.51 4.51 Total: 0.00 -4.45 299.01 -7.44 -11.89 By element: Atomic # 1 Polarization: -4.32 SS G_CDS: -3.78 Total: -8.10 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 1.75 Total: 4.96 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.94 kcal Atomic # 8 Polarization: -0.33 SS G_CDS: -0.94 Total: -1.27 kcal Atomic # 14 Polarization: -2.14 SS G_CDS: -6.61 Total: -8.74 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.29 Total: -2.29 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -4.45 -7.44 -11.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13445640_3095236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.134 kcal (2) G-P(sol) polarization free energy of solvation -4.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds