Wall clock time and date at job start Tue Mar 9 2021 14:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86306 * 109.47147 * 2 1 4 4 C 1.86303 * 109.47092 * 240.00373 * 2 1 3 5 5 C 1.86295 * 109.47327 * 120.00256 * 2 1 3 6 6 O 1.42897 * 109.47015 * 66.12418 * 5 2 1 7 7 C 1.35909 * 117.00308 * 77.84140 * 6 5 2 8 8 C 1.39078 * 120.46514 * 6.20065 * 7 6 5 9 9 C 1.38669 * 118.36362 * 179.97438 * 8 7 6 10 10 Br 1.89101 * 120.39560 * 179.97438 * 9 8 7 11 11 C 1.38302 * 119.20377 * 0.02562 * 9 8 7 12 12 N 1.31868 * 120.87472 * 359.74621 * 11 9 8 13 13 C 1.31815 * 121.78940 * 0.52260 * 12 11 9 14 14 C 1.50696 * 119.64813 * 179.75105 * 13 12 11 15 15 O 1.42899 * 109.47171 * 149.72755 * 14 13 12 16 16 Si 1.86296 * 109.47097 * 29.72724 * 14 13 12 17 17 H 1.48503 * 109.47288 * 179.97438 * 16 14 13 18 18 H 1.48496 * 109.47159 * 299.99732 * 16 14 13 19 19 H 1.48500 * 109.47379 * 60.00002 * 16 14 13 20 20 H 1.09000 * 109.46758 * 299.99677 * 1 2 3 21 21 H 1.09000 * 109.46775 * 59.99352 * 1 2 3 22 22 H 1.08992 * 109.47012 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46915 * 180.02562 * 3 2 1 24 24 H 1.08993 * 109.47460 * 300.00168 * 3 2 1 25 25 H 1.09000 * 109.47028 * 60.00488 * 3 2 1 26 26 H 1.09000 * 109.47027 * 294.74727 * 4 2 1 27 27 H 1.08995 * 109.46875 * 54.74671 * 4 2 1 28 28 H 1.09000 * 109.47011 * 174.75213 * 4 2 1 29 29 H 1.09003 * 109.46903 * 306.12400 * 5 2 1 30 30 H 1.09002 * 109.47339 * 186.12642 * 5 2 1 31 31 H 1.07998 * 120.81963 * 359.97066 * 8 7 6 32 32 H 1.07997 * 119.56225 * 179.97438 * 11 9 8 33 33 H 1.09003 * 109.47229 * 269.72332 * 14 13 12 34 34 H 0.96700 * 114.00312 * 300.00437 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4840 -0.8783 1.5210 6 8 2.1287 -2.2606 1.4513 7 6 2.8832 -3.0517 0.6439 8 6 4.0238 -2.5472 0.0284 9 6 4.7616 -3.3928 -0.7861 10 35 6.3220 -2.7666 -1.6517 11 6 4.3420 -4.6993 -0.9587 12 7 3.2576 -5.1469 -0.3565 13 6 2.5261 -4.3740 0.4214 14 6 1.2927 -4.9342 1.0815 15 8 1.0741 -4.2676 2.3264 16 14 1.5250 -6.7574 1.3858 17 1 0.3098 -7.3095 2.0368 18 1 1.7521 -7.4502 0.0921 19 1 2.6985 -6.9659 2.2716 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 3.5741 1.7565 -0.0005 24 1 2.1207 2.2704 -0.8899 25 1 2.1208 2.2703 0.8900 26 1 2.1995 -1.9294 -1.4755 27 1 2.0459 -0.4214 -2.4086 28 1 3.5699 -0.7974 -1.5694 29 1 2.0340 -0.4316 2.4077 30 1 3.5685 -0.7843 1.5776 31 1 4.3274 -1.5221 0.1811 32 1 4.9120 -5.3627 -1.5921 33 1 0.4313 -4.7812 0.4313 34 1 1.8022 -4.3612 2.9559 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13445640_3095236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:40:09 Heat of formation + Delta-G solvation = -54.114322 kcal Electronic energy + Delta-G solvation = -18024.857419 eV Core-core repulsion = 15128.896447 eV Total energy + Delta-G solvation = -2895.960972 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 319.015 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.09145 -39.23041 -37.78371 -34.44875 -32.24831 -31.20844 -29.70709 -28.42129 -28.38494 -27.93677 -27.02844 -24.00120 -23.18577 -19.32992 -18.57884 -18.14584 -17.19587 -16.95561 -16.04399 -15.69890 -15.38091 -15.07047 -14.77503 -14.55743 -14.14808 -13.87212 -13.81898 -13.72192 -13.41700 -13.28127 -13.25635 -13.06573 -12.67220 -12.49976 -12.30857 -12.10679 -11.89911 -11.57374 -11.06559 -11.01706 -10.87546 -10.81960 -10.50006 -10.16890 -9.20045 -0.40482 0.00075 0.35624 1.19603 1.51082 1.53570 1.62758 1.73034 1.79216 1.99584 2.31880 2.42027 2.54978 3.04034 3.27317 3.60815 3.69277 3.77014 4.08015 4.21693 4.46542 4.59443 4.66340 4.68799 4.75886 4.78208 4.79314 4.81035 4.82566 4.87645 5.10562 5.48217 5.57723 5.61748 6.10255 6.54802 6.73811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.051 2.949 3 C -0.455 4.455 4 C -0.467 4.467 5 C -0.270 4.270 6 O -0.262 6.262 7 C 0.103 3.897 8 C -0.135 4.135 9 C -0.110 4.110 10 Br -0.021 7.021 11 C 0.087 3.913 12 N -0.456 5.456 13 C 0.060 3.940 14 C -0.064 4.064 15 O -0.529 6.529 16 Si 1.007 2.993 17 H -0.270 1.270 18 H -0.260 1.260 19 H -0.271 1.271 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.172 0.828 32 H 0.182 0.818 33 H 0.136 0.864 34 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.009 3.534 0.615 3.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.243 2.757 3 C -0.563 4.563 4 C -0.572 4.572 5 C -0.390 4.390 6 O -0.172 6.172 7 C 0.052 3.948 8 C -0.163 4.163 9 C -0.192 4.192 10 Br 0.064 6.936 11 C -0.072 4.072 12 N -0.167 5.167 13 C -0.079 4.079 14 C -0.175 4.175 15 O -0.334 6.334 16 Si 0.831 3.169 17 H -0.195 1.195 18 H -0.184 1.184 19 H -0.196 1.196 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.148 0.852 30 H 0.102 0.898 31 H 0.189 0.811 32 H 0.199 0.801 33 H 0.153 0.847 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.711 2.134 0.210 2.259 hybrid contribution 0.639 1.109 0.212 1.297 sum 1.350 3.243 0.422 3.538 Atomic orbital electron populations 1.26240 1.21685 1.04217 1.04653 0.78904 0.66603 0.66167 0.64004 1.26126 1.06842 1.18103 1.05238 1.26663 1.06555 1.07366 1.16656 1.28563 1.06760 0.84258 1.19371 1.86330 1.51217 1.19995 1.59648 1.19754 0.90910 0.91679 0.92430 1.21950 0.94362 1.02186 0.97758 1.22847 0.97051 0.97126 1.02133 1.96835 1.31177 1.88194 1.77390 1.22902 0.93210 0.92782 0.98285 1.67373 1.05661 1.36308 1.07377 1.21688 0.98741 0.89301 0.98172 1.24855 0.96142 1.08587 0.87879 1.86542 1.46234 1.76717 1.23870 0.84777 0.78642 0.73343 0.80136 1.19472 1.18372 1.19564 0.90765 0.91205 0.91920 0.90419 0.90788 0.90365 0.92721 0.90720 0.90644 0.85239 0.89764 0.81067 0.80083 0.84673 0.76750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.17 8.65 113.37 0.98 2.15 16 2 Si 1.05 -7.00 11.70 68.60 0.80 -6.20 16 3 C -0.45 3.04 8.65 113.37 0.98 4.02 16 4 C -0.47 1.33 7.03 113.37 0.80 2.13 16 5 C -0.27 1.54 5.31 113.37 0.60 2.14 16 6 O -0.26 0.05 7.53 -70.67 -0.53 -0.49 16 7 C 0.10 0.12 5.03 22.60 0.11 0.24 16 8 C -0.13 0.08 5.50 22.57 0.12 0.21 16 9 C -0.11 -0.08 6.24 22.39 0.14 0.06 16 10 Br -0.02 0.01 33.73 -20.37 -0.69 -0.68 16 11 C 0.09 0.19 10.94 84.70 0.93 1.12 16 12 N -0.46 -2.18 8.36 -183.44 -1.53 -3.72 16 13 C 0.06 0.20 6.09 42.68 0.26 0.46 16 14 C -0.06 -0.09 2.92 71.23 0.21 0.11 16 15 O -0.53 -0.69 10.63 -127.13 -1.35 -2.05 16 16 Si 1.01 2.75 27.16 68.60 1.86 4.61 16 17 H -0.27 -1.13 7.11 99.48 0.71 -0.42 16 18 H -0.26 -1.45 7.11 99.48 0.71 -0.74 16 19 H -0.27 -1.20 7.11 99.48 0.71 -0.50 16 20 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 21 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 22 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 23 H 0.08 -0.58 7.96 -2.39 -0.02 -0.60 16 24 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 25 H 0.08 -0.56 7.96 -2.39 -0.02 -0.58 16 26 H 0.05 0.02 6.25 -2.39 -0.01 0.01 16 27 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 28 H 0.07 -0.27 6.54 -2.39 -0.02 -0.29 16 29 H 0.13 -1.06 7.96 -2.39 -0.02 -1.08 16 30 H 0.08 -0.69 6.11 -2.39 -0.01 -0.71 16 31 H 0.17 -0.88 4.88 -2.91 -0.01 -0.89 16 32 H 0.18 -0.27 8.06 -2.91 -0.02 -0.29 16 33 H 0.14 -0.07 7.96 -2.39 -0.02 -0.09 16 34 H 0.38 -1.49 8.70 -74.06 -0.64 -2.13 16 Total: 0.00 -10.24 299.01 4.92 -5.33 By element: Atomic # 1 Polarization: -10.66 SS G_CDS: 1.22 Total: -9.44 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.13 Total: 12.63 kcal Atomic # 7 Polarization: -2.18 SS G_CDS: -1.53 Total: -3.72 kcal Atomic # 8 Polarization: -0.65 SS G_CDS: -1.88 Total: -2.53 kcal Atomic # 14 Polarization: -4.26 SS G_CDS: 2.67 Total: -1.59 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.68 kcal Total: -10.24 4.92 -5.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13445640_3095236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.786 kcal (2) G-P(sol) polarization free energy of solvation -10.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds