Wall clock time and date at job start Tue Mar 9 2021 14:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86300 * 109.47234 * 2 1 4 4 C 1.86300 * 109.47286 * 239.99879 * 2 1 3 5 5 C 1.86303 * 109.47280 * 119.99875 * 2 1 3 6 6 C 1.53004 * 109.46946 * 59.99762 * 5 2 1 7 7 S 1.81394 * 109.46960 * 179.97438 * 6 5 2 8 8 C 1.81408 * 102.99810 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46846 * 180.02562 * 8 7 6 10 10 C 1.34517 * 125.78686 * 90.00186 * 9 8 7 11 11 C 1.41385 * 106.83572 * 179.97438 * 10 9 8 12 12 C 1.34506 * 106.84311 * 0.02562 * 11 10 9 13 13 C 1.50703 * 125.79043 * 180.02562 * 12 11 10 14 14 O 1.42898 * 109.47153 * 300.00448 * 13 12 11 15 15 Si 1.86296 * 109.47213 * 180.02562 * 13 12 11 16 16 H 1.48497 * 109.47477 * 60.00255 * 15 13 12 17 17 H 1.48502 * 109.47279 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47310 * 299.99961 * 15 13 12 19 19 O 1.34299 * 125.78804 * 269.69151 * 9 8 7 20 20 H 1.09002 * 109.46628 * 299.99951 * 1 2 3 21 21 H 1.09003 * 109.46967 * 59.99970 * 1 2 3 22 22 H 1.08993 * 109.47339 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47408 * 179.97438 * 3 2 1 24 24 H 1.09003 * 109.47168 * 299.99908 * 3 2 1 25 25 H 1.08997 * 109.46871 * 60.00229 * 3 2 1 26 26 H 1.09002 * 109.47030 * 300.00449 * 4 2 1 27 27 H 1.09003 * 109.46994 * 60.00167 * 4 2 1 28 28 H 1.08997 * 109.47413 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.46802 * 300.00379 * 5 2 1 30 30 H 1.08997 * 109.47384 * 179.97438 * 5 2 1 31 31 H 1.09005 * 109.46565 * 60.00227 * 6 5 2 32 32 H 1.08997 * 109.47094 * 300.00196 * 6 5 2 33 33 H 1.09000 * 109.46602 * 60.00357 * 8 7 6 34 34 H 1.09000 * 109.47286 * 300.00088 * 8 7 6 35 35 H 1.08001 * 126.57970 * 359.96428 * 10 9 8 36 36 H 1.07999 * 126.57298 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.46915 * 60.00239 * 13 12 11 38 38 H 0.96701 * 113.99975 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9740 -2.3207 1.5212 7 16 2.5793 -3.1760 3.0019 8 6 1.8826 -4.8415 2.8245 9 6 2.3017 -5.6890 3.9982 10 6 1.6294 -5.8166 5.1562 11 6 2.3760 -6.7014 5.9678 12 6 3.4601 -7.0610 5.2574 13 6 4.5463 -7.9974 5.7204 14 8 5.1605 -7.4695 6.8977 15 14 5.8268 -8.1747 4.3789 16 1 6.4151 -6.8450 4.0772 17 1 6.8969 -9.0979 4.8349 18 1 5.1890 -8.7231 3.1551 19 8 3.4069 -6.4493 4.0629 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.5740 1.7565 0.0005 24 1 2.1207 2.2703 -0.8900 25 1 2.1207 2.2702 0.8900 26 1 2.1206 -1.9059 -1.5211 27 1 2.1207 -0.3644 -2.4111 28 1 3.5740 -0.8787 -1.5209 29 1 2.1206 -0.3643 2.4111 30 1 3.5740 -0.8786 1.5210 31 1 2.3374 -2.8345 0.6312 32 1 0.8840 -2.3207 1.5212 33 1 2.2482 -5.2919 1.9017 34 1 0.7949 -4.7789 2.7922 35 1 0.6981 -5.3354 5.4161 36 1 2.1241 -7.0262 6.9665 37 1 4.1145 -8.9733 5.9423 38 1 5.8704 -8.0220 7.2525 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13465986_18345148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:40:45 Heat of formation + Delta-G solvation = -62.845062 kcal Electronic energy + Delta-G solvation = -16465.051277 eV Core-core repulsion = 13752.032635 eV Total energy + Delta-G solvation = -2713.018643 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 274.097 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.75942 -37.93035 -34.34412 -33.60729 -33.26653 -29.58078 -29.35839 -28.31861 -28.29708 -25.42695 -23.85008 -22.92348 -21.28067 -18.74021 -18.16656 -17.35944 -17.05047 -16.19569 -16.00720 -15.68796 -15.33319 -14.85152 -14.57592 -14.36368 -14.12034 -13.93415 -13.90209 -13.85024 -13.58052 -13.39857 -13.21606 -13.12004 -13.00730 -12.98985 -12.70767 -12.28061 -12.22870 -12.04931 -11.30270 -10.94878 -10.74672 -10.69512 -10.51091 -10.40854 -9.40508 -8.76510 0.00670 0.89328 1.04184 1.28261 1.41588 1.48835 1.70630 1.76857 1.91336 1.96109 2.03136 2.06786 2.72666 3.28982 3.65376 3.76210 4.00127 4.04967 4.07596 4.09846 4.31872 4.37365 4.61750 4.71443 4.81191 4.82262 4.85818 4.86543 4.88220 4.89246 4.91403 4.91835 4.96807 5.34345 5.44253 5.58208 5.65906 5.68413 5.99365 6.74102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.104 2.896 3 C -0.471 4.471 4 C -0.467 4.467 5 C -0.414 4.414 6 C -0.064 4.064 7 S -0.317 6.317 8 C -0.002 4.002 9 C -0.012 4.012 10 C -0.189 4.189 11 C -0.182 4.182 12 C -0.027 4.027 13 C -0.038 4.038 14 O -0.560 6.560 15 Si 0.980 3.020 16 H -0.289 1.289 17 H -0.226 1.226 18 H -0.264 1.264 19 O -0.189 6.189 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.126 0.874 38 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 -1.931 -1.697 3.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.293 2.707 3 C -0.577 4.577 4 C -0.574 4.574 5 C -0.497 4.497 6 C -0.211 4.211 7 S -0.090 6.090 8 C -0.148 4.148 9 C -0.062 4.062 10 C -0.211 4.211 11 C -0.201 4.201 12 C -0.078 4.078 13 C -0.148 4.148 14 O -0.371 6.371 15 Si 0.804 3.196 16 H -0.214 1.214 17 H -0.148 1.148 18 H -0.189 1.189 19 O -0.087 6.087 20 H 0.087 0.913 21 H 0.089 0.911 22 H 0.092 0.908 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.154 0.846 35 H 0.188 0.812 36 H 0.184 0.816 37 H 0.144 0.856 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -0.850 -1.192 -1.860 2.368 hybrid contribution -0.619 -0.600 -0.221 0.890 sum -1.469 -1.792 -2.081 3.114 Atomic orbital electron populations 1.26316 1.21563 1.04740 1.04529 0.77819 0.65320 0.64396 0.63120 1.26367 1.06327 1.20502 1.04485 1.26357 1.06302 1.08515 1.16209 1.26410 1.06412 0.99004 1.17889 1.23257 1.04290 0.97961 0.95636 1.87780 1.72563 1.10743 1.37880 1.21754 1.04665 0.91897 0.96507 1.21780 0.87911 0.97628 0.98921 1.21943 1.03341 1.02634 0.93170 1.21843 0.95146 1.01209 1.01898 1.21901 0.99691 1.01473 0.84701 1.23820 0.98693 0.95636 0.96610 1.86424 1.55600 1.52854 1.42190 0.85233 0.77985 0.79648 0.76783 1.21447 1.14799 1.18852 1.83854 1.40603 1.49084 1.35165 0.91288 0.91127 0.90817 0.91527 0.91043 0.91374 0.90946 0.91104 0.91535 0.90088 0.90467 0.88534 0.87910 0.87309 0.84563 0.81233 0.81645 0.85613 0.73892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.43 8.65 113.37 0.98 3.41 16 2 Si 1.10 -7.48 12.19 68.60 0.84 -6.64 16 3 C -0.47 1.53 8.65 113.37 0.98 2.51 16 4 C -0.47 2.14 8.65 113.37 0.98 3.12 16 5 C -0.41 1.09 4.46 71.98 0.32 1.41 16 6 C -0.06 0.13 5.31 71.98 0.38 0.51 16 7 S -0.32 -1.77 21.72 -56.49 -1.23 -2.99 16 8 C 0.00 0.00 6.47 71.24 0.46 0.46 16 9 C -0.01 -0.08 6.58 24.84 0.16 0.08 16 10 C -0.19 -1.05 10.81 22.19 0.24 -0.81 16 11 C -0.18 -1.13 10.79 22.19 0.24 -0.89 16 12 C -0.03 -0.20 6.25 24.83 0.16 -0.04 16 13 C -0.04 -0.02 2.98 71.24 0.21 0.19 16 14 O -0.56 -0.44 12.84 -148.98 -1.91 -2.35 16 15 Si 0.98 1.44 27.39 68.60 1.88 3.32 16 16 H -0.29 -2.51 7.11 99.48 0.71 -1.81 16 17 H -0.23 0.51 7.11 99.48 0.71 1.22 16 18 H -0.26 -1.06 7.11 99.48 0.71 -0.35 16 19 O -0.19 -1.89 9.05 -2.49 -0.02 -1.91 16 20 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 21 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 22 H 0.07 -0.44 7.79 -2.39 -0.02 -0.46 16 23 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 24 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 25 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 26 H 0.07 -0.38 7.79 -2.39 -0.02 -0.39 16 27 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 28 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H 0.08 -0.11 7.96 -2.39 -0.02 -0.13 16 30 H 0.08 -0.05 7.96 -2.39 -0.02 -0.07 16 31 H 0.10 -0.44 7.79 -2.39 -0.02 -0.46 16 32 H 0.10 -0.58 7.79 -2.39 -0.02 -0.60 16 33 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.14 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.17 0.18 8.06 -2.91 -0.02 0.15 16 36 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 37 H 0.13 -0.76 7.96 -2.39 -0.02 -0.78 16 38 H 0.41 -4.04 8.74 -74.06 -0.65 -4.69 16 Total: 0.00 -16.87 336.07 5.79 -11.08 By element: Atomic # 1 Polarization: -11.60 SS G_CDS: 1.12 Total: -10.47 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 5.12 Total: 9.96 kcal Atomic # 8 Polarization: -2.32 SS G_CDS: -1.94 Total: -4.26 kcal Atomic # 14 Polarization: -6.03 SS G_CDS: 2.72 Total: -3.32 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -1.23 Total: -2.99 kcal Total: -16.87 5.79 -11.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13465986_18345148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.764 kcal (2) G-P(sol) polarization free energy of solvation -16.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds