Wall clock time and date at job start Tue Mar 9 2021 14:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46966 * 2 1 4 4 C 1.53007 * 109.47041 * 240.00232 * 2 1 3 5 5 O 1.42897 * 109.47308 * 120.00153 * 2 1 3 6 6 C 1.42898 * 114.00171 * 60.00195 * 5 2 1 7 7 H 1.09000 * 112.84958 * 341.19456 * 6 5 2 8 8 C 1.53779 * 113.69459 * 112.46386 * 6 5 2 9 9 C 1.53775 * 87.08117 * 139.99254 * 8 6 5 10 10 H 1.09004 * 113.69317 * 89.12981 * 9 8 6 11 11 C 1.52999 * 113.61321 * 220.01740 * 9 8 6 12 12 O 1.42898 * 109.47284 * 272.49653 * 11 9 8 13 13 C 1.35885 * 116.99979 * 180.02562 * 12 11 9 14 14 C 1.39816 * 119.56847 * 180.02562 * 13 12 11 15 15 C 1.50694 * 119.53078 * 359.97438 * 14 13 12 16 16 O 1.42899 * 109.47390 * 284.99739 * 15 14 13 17 17 Si 1.86302 * 109.47035 * 165.00060 * 15 14 13 18 18 C 1.36018 * 120.93261 * 179.97438 * 14 13 12 19 19 C 1.40555 * 119.73139 * 0.02562 * 18 14 13 20 20 C 1.40532 * 121.22362 * 180.02562 * 19 18 14 21 21 C 1.36105 * 119.66921 * 179.97438 * 20 19 18 22 22 C 1.39377 * 120.99784 * 359.97438 * 21 20 19 23 23 C 1.36082 * 120.98727 * 359.97438 * 22 21 20 24 24 C 1.40583 * 119.65489 * 0.02562 * 23 22 21 25 25 C 1.36603 * 119.57078 * 0.02562 * 13 12 11 26 26 C 1.53777 * 87.08430 * 334.57142 * 9 8 6 27 27 H 1.09001 * 109.47345 * 299.99707 * 1 2 3 28 28 H 1.08997 * 109.47236 * 59.99880 * 1 2 3 29 29 H 1.09006 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47364 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47439 * 300.00468 * 3 2 1 32 32 H 1.09004 * 109.47418 * 60.00461 * 3 2 1 33 33 H 1.08996 * 109.46642 * 299.99780 * 4 2 1 34 34 H 1.09004 * 109.46812 * 59.99870 * 4 2 1 35 35 H 1.08996 * 109.46868 * 179.97438 * 4 2 1 36 36 H 1.08994 * 113.61304 * 25.44189 * 8 6 5 37 37 H 1.08999 * 113.61277 * 254.54532 * 8 6 5 38 38 H 1.09004 * 109.46963 * 152.50168 * 11 9 8 39 39 H 1.08998 * 109.47115 * 32.49993 * 11 9 8 40 40 H 1.09001 * 109.47421 * 45.00090 * 15 14 13 41 41 H 0.96703 * 113.99685 * 300.00469 * 16 15 14 42 42 H 1.48501 * 110.00358 * 180.02562 * 17 15 14 43 43 H 1.48499 * 110.00053 * 301.31691 * 17 15 14 44 44 H 1.07998 * 120.13424 * 180.27117 * 18 14 13 45 45 H 1.07995 * 120.16868 * 359.95373 * 20 19 18 46 46 H 1.08000 * 119.50126 * 179.97438 * 21 20 19 47 47 H 1.08003 * 119.50828 * 179.97438 * 22 21 20 48 48 H 1.08005 * 120.17552 * 179.97438 * 23 22 21 49 49 H 1.08002 * 120.18458 * 359.97438 * 25 13 12 50 50 H 1.09001 * 113.61858 * 139.98393 * 26 9 8 51 51 H 1.09006 * 113.60782 * 270.80120 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6736 1.1667 6 6 1.5848 -2.0355 1.2644 7 1 0.7237 -2.2583 0.6344 8 6 2.7320 -3.0494 1.1205 9 6 2.0543 -3.8565 2.2403 10 1 1.3214 -4.5776 1.8784 11 6 3.0397 -4.4625 3.2415 12 8 3.4721 -5.7404 2.7704 13 6 4.3560 -6.4182 3.5488 14 6 4.8151 -7.6736 3.1388 15 6 4.3223 -8.2567 1.8396 16 8 2.9823 -8.7246 2.0054 17 14 5.4191 -9.6779 1.3413 18 6 5.7003 -8.3758 3.8961 19 6 6.1622 -7.8360 5.1089 20 6 7.0770 -8.5341 5.9155 21 6 7.5038 -7.9813 7.0837 22 6 7.0476 -6.7300 7.4945 23 6 6.1625 -6.0243 6.7392 24 6 5.6989 -6.5628 5.5262 25 6 4.7843 -5.8641 4.7217 26 6 1.4333 -2.5312 2.7122 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 3.7065 -2.6486 1.3995 37 1 2.7437 -3.5618 0.1586 38 1 2.5501 -4.5785 4.2085 39 1 3.9015 -3.8036 3.3474 40 1 4.3464 -7.4903 1.0650 41 1 2.8858 -9.4100 2.6807 42 1 4.9441 -10.2615 0.0611 43 1 6.8213 -9.2109 1.1966 44 1 6.0498 -9.3425 3.5649 45 1 7.4394 -9.5045 5.6101 46 1 8.2066 -8.5203 7.7017 47 1 7.4018 -6.3142 8.4262 48 1 5.8173 -5.0560 7.0704 49 1 4.4229 -4.8935 5.0276 50 1 0.3966 -2.6253 3.0354 51 1 2.0521 -1.9894 3.4276 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13906094_14598384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:49:39 Heat of formation + Delta-G solvation = -50.410587 kcal Electronic energy + Delta-G solvation = -29976.684070 eV Core-core repulsion = 26001.521872 eV Total energy + Delta-G solvation = -3975.162198 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.187 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86013 -40.94960 -39.79649 -38.50106 -37.85979 -36.21875 -33.90304 -33.62676 -31.70274 -30.14724 -29.20289 -28.41213 -28.29209 -26.79681 -26.65195 -24.53540 -23.50501 -22.96322 -22.63650 -20.83930 -20.63751 -19.29912 -18.66786 -18.08161 -17.64819 -17.12441 -16.90890 -16.65372 -16.29469 -16.03020 -15.85152 -15.74556 -15.67842 -15.18646 -14.96065 -14.61967 -14.51729 -14.40708 -14.21126 -13.99271 -13.92427 -13.46797 -13.40363 -13.30454 -13.19954 -12.94936 -12.80703 -12.78005 -12.68073 -12.60030 -12.25974 -12.11250 -12.06586 -11.87640 -11.75953 -11.62734 -11.54835 -11.32582 -11.17436 -10.81931 -10.35694 -10.34112 -9.27134 -8.69563 -5.03552 -0.48107 0.07182 1.06539 1.30838 1.65403 1.96825 2.00251 2.11298 2.72732 3.12271 3.44188 3.50556 3.53481 3.56021 3.73844 3.74161 3.77809 3.87181 3.93590 3.94949 4.03823 4.05207 4.06935 4.10918 4.19334 4.22268 4.31920 4.37479 4.45545 4.49096 4.54564 4.58959 4.60601 4.63698 4.73623 4.74109 4.76639 4.79817 4.86875 4.88250 4.89780 4.97772 4.99412 5.04707 5.08450 5.14533 5.22238 5.27745 5.29700 5.33142 5.36110 5.58726 5.60948 5.68244 5.99486 6.39741 6.43942 6.66538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.176 4.176 5 O -0.362 6.362 6 C 0.062 3.938 7 H 0.092 0.908 8 C -0.148 4.148 9 C -0.108 4.108 10 H 0.105 0.895 11 C 0.071 3.929 12 O -0.301 6.301 13 C 0.161 3.839 14 C -0.133 4.133 15 C -0.057 4.057 16 O -0.533 6.533 17 Si 0.678 3.322 18 C -0.062 4.062 19 C -0.082 4.082 20 C -0.092 4.092 21 C -0.129 4.129 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.007 4.007 25 C -0.216 4.216 26 C -0.127 4.127 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.114 0.886 41 H 0.375 0.625 42 H -0.252 1.252 43 H -0.255 1.255 44 H 0.140 0.860 45 H 0.130 0.870 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.133 0.867 50 H 0.078 0.922 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 -0.728 1.925 2.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.066 3.934 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.281 6.281 6 C 0.005 3.995 7 H 0.110 0.890 8 C -0.186 4.186 9 C -0.127 4.127 10 H 0.124 0.876 11 C -0.005 4.005 12 O -0.214 6.214 13 C 0.115 3.885 14 C -0.134 4.134 15 C -0.168 4.168 16 O -0.338 6.338 17 Si 0.579 3.421 18 C -0.080 4.080 19 C -0.082 4.082 20 C -0.110 4.110 21 C -0.147 4.147 22 C -0.119 4.119 23 C -0.139 4.139 24 C -0.007 4.007 25 C -0.235 4.235 26 C -0.164 4.164 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.132 0.868 41 H 0.222 0.778 42 H -0.177 1.177 43 H -0.180 1.180 44 H 0.157 0.843 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.151 0.849 50 H 0.096 0.904 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.196 -0.555 0.771 0.970 hybrid contribution -0.213 0.728 0.057 0.760 sum -0.017 0.173 0.828 0.846 Atomic orbital electron populations 1.22472 0.95629 1.02471 1.03079 1.21538 0.93118 0.93240 0.85529 1.21768 1.02010 0.93221 1.02610 1.22472 1.02301 1.00794 0.97829 1.88030 1.73775 1.23387 1.42887 1.23563 0.97042 0.81800 0.97138 0.88992 1.23611 0.99380 0.96483 0.99083 1.22305 0.98031 0.95775 0.96572 0.87649 1.22842 0.97364 0.82508 0.97737 1.86136 1.57206 1.31541 1.46476 1.18368 0.89448 0.91015 0.89653 1.19487 1.00662 0.93996 0.99247 1.24978 0.90544 1.05003 0.96299 1.86553 1.25469 1.59801 1.61964 0.95170 0.77936 0.83444 0.85553 1.20734 0.95430 0.98550 0.93251 1.17945 0.99717 0.94849 0.95671 1.21040 0.96063 0.99539 0.94355 1.20869 1.00785 0.96001 0.97041 1.20931 0.96613 0.94764 0.99630 1.20997 0.98552 1.00247 0.94059 1.17804 0.95327 0.93171 0.94440 1.21030 1.03880 1.02264 0.96321 1.23226 1.01841 0.94270 0.97072 0.91588 0.91347 0.92215 0.91782 0.91059 0.91753 0.92275 0.91525 0.91700 0.89178 0.90987 0.91597 0.91678 0.86818 0.77802 1.17669 1.17981 0.84311 0.85207 0.85745 0.85809 0.85605 0.84887 0.90375 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.06 8.38 37.16 0.31 0.37 16 2 C 0.10 0.06 1.11 -90.62 -0.10 -0.04 16 3 C -0.14 -0.01 8.84 37.15 0.33 0.32 16 4 C -0.18 0.00 8.38 37.16 0.31 0.31 16 5 O -0.36 -0.75 10.00 -35.23 -0.35 -1.10 16 6 C 0.06 0.03 2.81 -25.92 -0.07 -0.05 16 7 H 0.09 -0.03 5.54 -51.93 -0.29 -0.31 16 8 C -0.15 -0.08 7.47 -25.92 -0.19 -0.27 16 9 C -0.11 0.00 4.01 -89.81 -0.36 -0.36 16 10 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 11 C 0.07 0.04 4.56 37.16 0.17 0.21 16 12 O -0.30 -0.87 9.40 -19.38 -0.18 -1.06 16 13 C 0.16 0.45 6.63 -39.58 -0.26 0.18 16 14 C -0.13 -0.24 5.25 -104.83 -0.55 -0.79 16 15 C -0.06 -0.08 2.35 36.00 0.08 0.01 16 16 O -0.53 -0.87 12.88 -35.23 -0.45 -1.33 16 17 Si 0.68 -0.20 29.87 -169.99 -5.08 -5.27 16 18 C -0.06 -0.04 8.37 -39.51 -0.33 -0.37 16 19 C -0.08 -0.14 5.74 -106.81 -0.61 -0.75 16 20 C -0.09 -0.03 9.77 -39.48 -0.39 -0.41 16 21 C -0.13 -0.02 9.95 -39.92 -0.40 -0.41 16 22 C -0.10 -0.04 9.95 -39.93 -0.40 -0.44 16 23 C -0.12 -0.14 9.77 -39.47 -0.39 -0.52 16 24 C -0.01 -0.02 5.74 -106.84 -0.61 -0.63 16 25 C -0.22 -0.45 8.74 -39.35 -0.34 -0.79 16 26 C -0.13 0.05 7.47 -25.92 -0.19 -0.14 16 27 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 29 H 0.06 -0.04 6.25 -51.93 -0.32 -0.36 16 30 H 0.06 0.03 8.14 -51.93 -0.42 -0.40 16 31 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 32 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.06 0.00 7.02 -51.93 -0.36 -0.37 16 34 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 35 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 36 H 0.09 0.11 7.90 -51.93 -0.41 -0.30 16 37 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 38 H 0.07 -0.02 7.63 -51.93 -0.40 -0.41 16 39 H 0.07 0.01 7.33 -51.93 -0.38 -0.38 16 40 H 0.11 0.30 7.80 -51.93 -0.40 -0.11 16 41 H 0.38 -0.91 8.70 45.56 0.40 -0.52 16 42 H -0.25 -0.71 7.11 56.52 0.40 -0.31 16 43 H -0.26 -0.54 7.11 56.52 0.40 -0.14 16 44 H 0.14 -0.32 5.01 -52.49 -0.26 -0.58 16 45 H 0.13 -0.28 8.06 -52.49 -0.42 -0.71 16 46 H 0.12 -0.23 8.06 -52.49 -0.42 -0.65 16 47 H 0.12 -0.19 8.06 -52.48 -0.42 -0.61 16 48 H 0.13 -0.07 8.06 -52.48 -0.42 -0.49 16 49 H 0.13 0.06 6.19 -52.49 -0.32 -0.26 16 50 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 51 H 0.09 -0.02 8.10 -51.93 -0.42 -0.44 16 LS Contribution 402.77 15.07 6.07 6.07 Total: 0.00 -6.28 402.77 -12.29 -18.57 By element: Atomic # 1 Polarization: -3.02 SS G_CDS: -8.30 Total: -11.31 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -3.99 Total: -4.57 kcal Atomic # 8 Polarization: -2.49 SS G_CDS: -0.99 Total: -3.48 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: -5.08 Total: -5.27 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -6.28 -12.29 -18.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13906094_14598384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.838 kcal (2) G-P(sol) polarization free energy of solvation -6.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds