Wall clock time and date at job start Tue Mar 9 2021 14:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46966 * 2 1 4 4 C 1.53007 * 109.47041 * 240.00232 * 2 1 3 5 5 O 1.42897 * 109.47308 * 120.00153 * 2 1 3 6 6 C 1.42898 * 114.00171 * 60.00195 * 5 2 1 7 7 H 1.09000 * 112.84958 * 341.19456 * 6 5 2 8 8 C 1.53779 * 113.69459 * 112.46386 * 6 5 2 9 9 C 1.53775 * 87.08117 * 139.99254 * 8 6 5 10 10 H 1.09004 * 113.69317 * 89.12981 * 9 8 6 11 11 C 1.52999 * 113.61321 * 220.01740 * 9 8 6 12 12 O 1.42898 * 109.47284 * 272.49653 * 11 9 8 13 13 C 1.35885 * 116.99979 * 180.02562 * 12 11 9 14 14 C 1.39816 * 119.56847 * 180.02562 * 13 12 11 15 15 C 1.50694 * 119.53078 * 359.97438 * 14 13 12 16 16 O 1.42899 * 109.47390 * 284.99739 * 15 14 13 17 17 Si 1.86302 * 109.47035 * 165.00060 * 15 14 13 18 18 C 1.36018 * 120.93261 * 179.97438 * 14 13 12 19 19 C 1.40555 * 119.73139 * 0.02562 * 18 14 13 20 20 C 1.40532 * 121.22362 * 180.02562 * 19 18 14 21 21 C 1.36105 * 119.66921 * 179.97438 * 20 19 18 22 22 C 1.39377 * 120.99784 * 359.97438 * 21 20 19 23 23 C 1.36082 * 120.98727 * 359.97438 * 22 21 20 24 24 C 1.40583 * 119.65489 * 0.02562 * 23 22 21 25 25 C 1.36603 * 119.57078 * 0.02562 * 13 12 11 26 26 C 1.53777 * 87.08430 * 334.57142 * 9 8 6 27 27 H 1.09001 * 109.47345 * 299.99707 * 1 2 3 28 28 H 1.08997 * 109.47236 * 59.99880 * 1 2 3 29 29 H 1.09006 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47364 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47439 * 300.00468 * 3 2 1 32 32 H 1.09004 * 109.47418 * 60.00461 * 3 2 1 33 33 H 1.08996 * 109.46642 * 299.99780 * 4 2 1 34 34 H 1.09004 * 109.46812 * 59.99870 * 4 2 1 35 35 H 1.08996 * 109.46868 * 179.97438 * 4 2 1 36 36 H 1.08994 * 113.61304 * 25.44189 * 8 6 5 37 37 H 1.08999 * 113.61277 * 254.54532 * 8 6 5 38 38 H 1.09004 * 109.46963 * 152.50168 * 11 9 8 39 39 H 1.08998 * 109.47115 * 32.49993 * 11 9 8 40 40 H 1.09001 * 109.47421 * 45.00090 * 15 14 13 41 41 H 0.96703 * 113.99685 * 300.00469 * 16 15 14 42 42 H 1.48501 * 110.00358 * 180.02562 * 17 15 14 43 43 H 1.48499 * 110.00053 * 301.31691 * 17 15 14 44 44 H 1.07998 * 120.13424 * 180.27117 * 18 14 13 45 45 H 1.07995 * 120.16868 * 359.95373 * 20 19 18 46 46 H 1.08000 * 119.50126 * 179.97438 * 21 20 19 47 47 H 1.08003 * 119.50828 * 179.97438 * 22 21 20 48 48 H 1.08005 * 120.17552 * 179.97438 * 23 22 21 49 49 H 1.08002 * 120.18458 * 359.97438 * 25 13 12 50 50 H 1.09001 * 113.61858 * 139.98393 * 26 9 8 51 51 H 1.09006 * 113.60782 * 270.80120 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6736 1.1667 6 6 1.5848 -2.0355 1.2644 7 1 0.7237 -2.2583 0.6344 8 6 2.7320 -3.0494 1.1205 9 6 2.0543 -3.8565 2.2403 10 1 1.3214 -4.5776 1.8784 11 6 3.0397 -4.4625 3.2415 12 8 3.4721 -5.7404 2.7704 13 6 4.3560 -6.4182 3.5488 14 6 4.8151 -7.6736 3.1388 15 6 4.3223 -8.2567 1.8396 16 8 2.9823 -8.7246 2.0054 17 14 5.4191 -9.6779 1.3413 18 6 5.7003 -8.3758 3.8961 19 6 6.1622 -7.8360 5.1089 20 6 7.0770 -8.5341 5.9155 21 6 7.5038 -7.9813 7.0837 22 6 7.0476 -6.7300 7.4945 23 6 6.1625 -6.0243 6.7392 24 6 5.6989 -6.5628 5.5262 25 6 4.7843 -5.8641 4.7217 26 6 1.4333 -2.5312 2.7122 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 3.7065 -2.6486 1.3995 37 1 2.7437 -3.5618 0.1586 38 1 2.5501 -4.5785 4.2085 39 1 3.9015 -3.8036 3.3474 40 1 4.3464 -7.4903 1.0650 41 1 2.8858 -9.4100 2.6807 42 1 4.9441 -10.2615 0.0611 43 1 6.8213 -9.2109 1.1966 44 1 6.0498 -9.3425 3.5649 45 1 7.4394 -9.5045 5.6101 46 1 8.2066 -8.5203 7.7017 47 1 7.4018 -6.3142 8.4262 48 1 5.8173 -5.0560 7.0704 49 1 4.4229 -4.8935 5.0276 50 1 0.3966 -2.6253 3.0354 51 1 2.0521 -1.9894 3.4276 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13906094_14598384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:49:38 Heat of formation + Delta-G solvation = -42.988857 kcal Electronic energy + Delta-G solvation = -29976.362239 eV Core-core repulsion = 26001.521872 eV Total energy + Delta-G solvation = -3974.840367 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.187 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.91818 -40.99301 -39.85531 -38.54575 -37.93189 -36.26539 -33.95394 -33.66151 -31.74169 -30.18742 -29.25275 -28.39881 -28.30166 -26.85026 -26.68704 -24.59210 -23.53764 -22.99021 -22.68669 -20.87012 -20.68076 -19.36471 -18.72452 -18.13314 -17.68303 -17.20435 -16.96815 -16.69085 -16.33042 -16.09044 -15.89356 -15.79264 -15.69679 -15.25119 -14.99656 -14.63469 -14.55967 -14.41502 -14.24989 -14.09935 -13.95262 -13.50893 -13.41122 -13.31234 -13.20377 -12.96246 -12.83351 -12.79110 -12.69333 -12.64170 -12.29959 -12.21968 -12.10213 -11.89414 -11.78657 -11.66708 -11.59688 -11.35567 -11.21220 -10.86832 -10.41672 -10.41559 -9.32988 -8.74897 -5.05327 -0.51221 0.00307 1.03027 1.26859 1.62004 1.92216 1.94553 2.05109 2.70178 3.08250 3.40506 3.47065 3.50145 3.54505 3.71214 3.72450 3.74993 3.86728 3.93142 3.94858 4.01568 4.03476 4.06363 4.09204 4.18038 4.22892 4.31265 4.36862 4.41422 4.48016 4.54904 4.57742 4.59582 4.63576 4.70958 4.72026 4.74415 4.80250 4.84433 4.87483 4.89466 4.94839 4.96838 5.03711 5.07779 5.12390 5.22321 5.26266 5.28275 5.28743 5.34249 5.57865 5.60778 5.64979 6.01435 6.33688 6.37122 6.78735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 C -0.139 4.139 4 C -0.174 4.174 5 O -0.380 6.380 6 C 0.062 3.938 7 H 0.100 0.900 8 C -0.148 4.148 9 C -0.103 4.103 10 H 0.103 0.897 11 C 0.070 3.930 12 O -0.317 6.317 13 C 0.142 3.858 14 C -0.148 4.148 15 C -0.068 4.068 16 O -0.551 6.551 17 Si 0.783 3.217 18 C -0.056 4.056 19 C -0.099 4.099 20 C -0.096 4.096 21 C -0.137 4.137 22 C -0.105 4.105 23 C -0.137 4.137 24 C -0.027 4.027 25 C -0.224 4.224 26 C -0.120 4.120 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.392 0.608 42 H -0.295 1.295 43 H -0.284 1.284 44 H 0.168 0.832 45 H 0.157 0.843 46 H 0.146 0.854 47 H 0.142 0.858 48 H 0.135 0.865 49 H 0.140 0.860 50 H 0.089 0.911 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.017 -1.593 2.637 3.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.059 3.941 3 C -0.196 4.196 4 C -0.232 4.232 5 O -0.300 6.300 6 C 0.004 3.996 7 H 0.118 0.882 8 C -0.186 4.186 9 C -0.121 4.121 10 H 0.121 0.879 11 C -0.005 4.005 12 O -0.231 6.231 13 C 0.097 3.903 14 C -0.149 4.149 15 C -0.177 4.177 16 O -0.359 6.359 17 Si 0.688 3.312 18 C -0.073 4.073 19 C -0.099 4.099 20 C -0.113 4.113 21 C -0.154 4.154 22 C -0.123 4.123 23 C -0.155 4.155 24 C -0.027 4.027 25 C -0.243 4.243 26 C -0.158 4.158 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.242 0.758 42 H -0.223 1.223 43 H -0.210 1.210 44 H 0.185 0.815 45 H 0.174 0.826 46 H 0.164 0.836 47 H 0.159 0.841 48 H 0.153 0.847 49 H 0.158 0.842 50 H 0.107 0.893 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.454 -1.408 1.517 2.119 hybrid contribution -0.279 1.025 -0.151 1.073 sum 0.175 -0.383 1.366 1.429 Atomic orbital electron populations 1.22448 0.94836 1.02749 1.03359 1.21687 0.93798 0.93354 0.85256 1.21792 1.01576 0.93145 1.03107 1.22449 1.01718 1.00900 0.98087 1.88007 1.74279 1.24063 1.43654 1.23631 0.96986 0.81177 0.97770 0.88244 1.23578 0.99148 0.96794 0.99095 1.22248 0.97767 0.95822 0.96266 0.87857 1.22917 0.97520 0.81901 0.98167 1.86110 1.57528 1.32324 1.47126 1.18638 0.89930 0.91698 0.90074 1.19631 1.01462 0.94093 0.99728 1.25200 0.91043 1.05703 0.95773 1.86502 1.25830 1.60704 1.62862 0.94026 0.74330 0.80225 0.82652 1.21009 0.94377 0.99312 0.92573 1.18242 1.00344 0.94970 0.96381 1.21388 0.95368 1.00482 0.94110 1.21209 1.00938 0.95996 0.97296 1.21247 0.95998 0.94951 1.00097 1.21198 0.99235 1.01013 0.94084 1.18074 0.95742 0.93871 0.95053 1.21158 1.04122 1.02699 0.96313 1.23189 1.02382 0.93588 0.96608 0.91982 0.90363 0.91941 0.92484 0.89690 0.92117 0.92307 0.90472 0.92582 0.90152 0.91372 0.90860 0.91623 0.88940 0.75835 1.22256 1.21022 0.81522 0.82579 0.83644 0.84067 0.84714 0.84208 0.89268 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.13 8.38 71.98 0.60 0.74 16 2 C 0.10 0.16 1.11 -10.79 -0.01 0.14 16 3 C -0.14 -0.08 8.84 71.98 0.64 0.56 16 4 C -0.17 -0.08 8.38 71.98 0.60 0.52 16 5 O -0.38 -1.92 10.00 -148.98 -1.49 -3.41 16 6 C 0.06 0.10 2.81 31.12 0.09 0.19 16 7 H 0.10 -0.01 5.54 -2.39 -0.01 -0.03 16 8 C -0.15 -0.40 7.47 31.12 0.23 -0.16 16 9 C -0.10 -0.13 4.01 -10.27 -0.04 -0.17 16 10 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 11 C 0.07 0.18 4.56 71.98 0.33 0.51 16 12 O -0.32 -2.47 9.40 -92.26 -0.87 -3.33 16 13 C 0.14 1.02 6.63 22.27 0.15 1.16 16 14 C -0.15 -0.66 5.25 -20.00 -0.10 -0.77 16 15 C -0.07 -0.25 2.35 71.23 0.17 -0.08 16 16 O -0.55 -2.24 12.88 -148.98 -1.92 -4.16 16 17 Si 0.78 -0.54 29.87 68.60 2.05 1.51 16 18 C -0.06 -0.05 8.37 22.32 0.19 0.14 16 19 C -0.10 -0.32 5.74 -21.28 -0.12 -0.44 16 20 C -0.10 0.06 9.77 22.33 0.22 0.28 16 21 C -0.14 0.14 9.95 22.05 0.22 0.36 16 22 C -0.11 -0.02 9.95 22.04 0.22 0.20 16 23 C -0.14 -0.37 9.77 22.34 0.22 -0.15 16 24 C -0.03 -0.15 5.74 -21.30 -0.12 -0.27 16 25 C -0.22 -1.26 8.74 22.42 0.20 -1.07 16 26 C -0.12 0.02 7.47 31.12 0.23 0.25 16 27 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.06 -0.08 6.25 -2.38 -0.01 -0.10 16 30 H 0.06 0.10 8.14 -2.39 -0.02 0.09 16 31 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 33 H 0.06 0.03 7.02 -2.39 -0.02 0.01 16 34 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 36 H 0.08 0.37 7.90 -2.39 -0.02 0.35 16 37 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.07 0.05 7.63 -2.38 -0.02 0.04 16 39 H 0.07 0.14 7.33 -2.39 -0.02 0.12 16 40 H 0.09 0.68 7.80 -2.39 -0.02 0.66 16 41 H 0.39 -1.87 8.70 -74.06 -0.64 -2.51 16 42 H -0.29 -1.88 7.11 99.48 0.71 -1.17 16 43 H -0.28 -1.13 7.11 99.48 0.71 -0.42 16 44 H 0.17 -1.02 5.01 -2.91 -0.01 -1.03 16 45 H 0.16 -1.05 8.06 -2.91 -0.02 -1.08 16 46 H 0.15 -0.84 8.06 -2.91 -0.02 -0.86 16 47 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 48 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 49 H 0.14 0.37 6.19 -2.91 -0.02 0.35 16 50 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 51 H 0.09 0.04 8.10 -2.38 -0.02 0.02 16 Total: 0.00 -16.01 402.77 1.98 -14.03 By element: Atomic # 1 Polarization: -6.89 SS G_CDS: 0.31 Total: -6.58 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 3.89 Total: 1.95 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -4.28 Total: -10.90 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: 2.05 Total: 1.51 kcal Total: -16.01 1.98 -14.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13906094_14598384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.955 kcal (2) G-P(sol) polarization free energy of solvation -16.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds