Wall clock time and date at job start Tue Mar 9 2021 14:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.45194 * 109.46979 * 239.99917 * 2 1 3 6 6 C 1.34637 * 117.00311 * 60.00565 * 5 2 1 7 7 O 1.21515 * 119.99443 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00399 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00294 * 179.97438 * 8 6 5 10 10 H 1.09003 * 112.84639 * 23.80900 * 9 8 6 11 11 C 1.53778 * 113.61273 * 155.00323 * 9 8 6 12 12 C 1.53785 * 87.08175 * 139.98510 * 11 9 8 13 13 H 1.09002 * 113.61542 * 89.11346 * 12 11 9 14 14 C 1.53001 * 113.61396 * 220.01673 * 12 11 9 15 15 O 1.42887 * 109.46943 * 184.99664 * 14 12 11 16 16 C 1.35891 * 116.99807 * 180.02562 * 15 14 12 17 17 C 1.39810 * 119.56382 * 179.73012 * 16 15 14 18 18 C 1.50700 * 119.53824 * 359.97438 * 17 16 15 19 19 O 1.42898 * 109.47170 * 284.99897 * 18 17 16 20 20 Si 1.86298 * 109.47212 * 164.99854 * 18 17 16 21 21 C 1.36026 * 120.92796 * 179.70965 * 17 16 15 22 22 C 1.40552 * 119.72688 * 0.55697 * 21 17 16 23 23 C 1.40529 * 121.21734 * 179.69306 * 22 21 17 24 24 C 1.36104 * 119.67296 * 180.02562 * 23 22 21 25 25 C 1.39381 * 120.99504 * 0.02736 * 24 23 22 26 26 C 1.36088 * 120.98492 * 359.95451 * 25 24 23 27 27 C 1.40578 * 119.65786 * 0.04346 * 26 25 24 28 28 C 1.36603 * 119.56790 * 359.97438 * 16 15 14 29 29 C 1.53781 * 87.07899 * 334.56504 * 12 11 9 30 30 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 36 36 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 37 37 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 39 39 H 0.97003 * 119.99930 * 359.97438 * 8 6 5 40 40 H 1.09007 * 113.61072 * 254.52688 * 11 9 8 41 41 H 1.08997 * 113.62149 * 25.43060 * 11 9 8 42 42 H 1.09004 * 109.46840 * 304.99927 * 14 12 11 43 43 H 1.09003 * 109.46870 * 64.99829 * 14 12 11 44 44 H 1.09003 * 109.46780 * 44.99870 * 18 17 16 45 45 H 0.96700 * 114.00044 * 179.97438 * 19 18 17 46 46 H 1.48496 * 110.00084 * 298.68108 * 20 18 17 47 47 H 1.48504 * 110.00055 * 60.00174 * 20 18 17 48 48 H 1.07993 * 120.13363 * 180.25835 * 21 17 16 49 49 H 1.08006 * 120.16503 * 0.02562 * 23 22 21 50 50 H 1.07997 * 119.50575 * 180.02562 * 24 23 22 51 51 H 1.07997 * 119.50968 * 179.97438 * 25 24 23 52 52 H 1.08000 * 120.16856 * 180.02562 * 26 25 24 53 53 H 1.07998 * 120.18255 * 359.97438 * 28 16 15 54 54 H 1.09000 * 113.61712 * 270.88971 * 29 12 11 55 55 H 1.09000 * 113.61789 * 139.98260 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0140 -0.6845 -1.1855 6 6 1.6524 -0.1729 -2.3772 7 8 0.9511 0.8183 -2.4252 8 7 2.0681 -0.7600 -3.5168 9 6 1.6741 -0.2036 -4.8136 10 1 1.4212 0.8553 -4.7605 11 6 2.6476 -0.5480 -5.9531 12 6 1.4103 -0.7465 -6.8445 13 1 1.0840 0.1638 -7.3476 14 6 1.5228 -1.9427 -7.7917 15 8 0.3840 -1.9761 -8.6541 16 6 0.3277 -2.9849 -9.5628 17 6 -0.7657 -3.0722 -10.4297 18 6 -1.8662 -2.0463 -10.3432 19 8 -2.6709 -2.3069 -9.1915 20 14 -2.9240 -2.1397 -11.8739 21 6 -0.8476 -4.0671 -11.3538 22 6 0.1735 -5.0296 -11.4339 23 6 0.1176 -6.0743 -12.3722 24 6 1.1236 -6.9897 -12.4220 25 6 2.2117 -6.9084 -11.5547 26 6 2.3002 -5.9107 -10.6334 27 6 1.2803 -4.9466 -10.5519 28 6 1.3377 -3.9033 -9.6138 29 6 0.6285 -1.0523 -5.5561 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 -1.7489 1.2493 37 1 3.1300 -0.7217 1.2491 38 1 1.6766 -0.2074 2.1393 39 1 2.6283 -1.5510 -3.4785 40 1 3.2760 0.2887 -6.2584 41 1 3.2139 -1.4635 -5.7819 42 1 2.4291 -1.8485 -8.3899 43 1 1.5654 -2.8638 -7.2103 44 1 -1.4293 -1.0508 -10.2636 45 1 -3.4005 -1.6836 -9.0722 46 1 -2.1055 -1.8392 -13.0760 47 1 -3.5253 -3.4922 -11.9940 48 1 -1.6960 -4.1199 -12.0198 49 1 -0.7195 -6.1504 -13.0504 50 1 1.0781 -7.7912 -13.1444 51 1 2.9963 -7.6480 -11.6149 52 1 3.1494 -5.8601 -9.9681 53 1 2.1754 -3.8274 -8.9365 54 1 0.6427 -2.1057 -5.2763 55 1 -0.3732 -0.6227 -5.5407 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13906094_15734236.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:49:46 Heat of formation + Delta-G solvation = -74.042150 kcal Electronic energy + Delta-G solvation = -35443.198073 eV Core-core repulsion = 30799.139271 eV Total energy + Delta-G solvation = -4644.058802 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.197 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.03139 -41.85613 -40.60214 -39.62582 -38.19299 -37.81979 -36.46602 -35.41854 -34.24746 -33.80647 -31.88917 -30.25036 -29.18056 -28.38858 -28.32124 -26.88566 -26.75760 -25.18429 -23.88362 -23.32108 -22.95539 -22.19556 -21.42452 -20.56029 -19.51965 -19.08455 -18.46034 -18.36826 -17.90008 -17.68893 -17.21808 -17.04183 -16.68891 -16.42368 -16.21953 -15.93320 -15.82890 -15.51490 -15.38903 -15.21809 -15.10699 -14.64071 -14.52061 -14.23827 -14.08848 -13.99348 -13.88050 -13.69167 -13.49352 -13.38444 -13.18697 -12.98962 -12.91940 -12.88692 -12.78688 -12.69564 -12.52087 -12.37423 -12.27886 -12.16208 -11.98263 -11.84035 -11.69378 -11.65448 -11.41558 -11.27558 -11.12560 -10.96980 -10.28256 -10.17558 -9.43746 -8.84980 -4.99839 -0.65175 -0.10038 0.89345 1.14916 1.24666 1.58285 1.71041 1.81249 1.89626 2.05214 2.94625 3.12862 3.29814 3.37770 3.45976 3.46864 3.72252 3.73012 3.75208 3.77594 3.79023 3.90536 3.92325 3.92457 3.99594 4.01163 4.17342 4.24182 4.26411 4.28568 4.40130 4.44680 4.47628 4.50745 4.59209 4.61590 4.67938 4.73350 4.74378 4.77339 4.78821 4.84367 4.85598 4.85919 4.92918 4.94282 5.01902 5.06524 5.09546 5.16657 5.18363 5.25071 5.30243 5.45704 5.46892 5.48498 5.52691 5.57719 5.90010 6.30699 6.38001 6.88968 7.31909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.180 4.180 4 C -0.138 4.138 5 O -0.370 6.370 6 C 0.643 3.357 7 O -0.594 6.594 8 N -0.690 5.690 9 C 0.136 3.864 10 H 0.106 0.894 11 C -0.118 4.118 12 C -0.098 4.098 13 H 0.106 0.894 14 C 0.064 3.936 15 O -0.312 6.312 16 C 0.147 3.853 17 C -0.106 4.106 18 C -0.073 4.073 19 O -0.560 6.560 20 Si 0.774 3.226 21 C -0.090 4.090 22 C -0.101 4.101 23 C -0.113 4.113 24 C -0.128 4.128 25 C -0.106 4.106 26 C -0.125 4.125 27 C -0.028 4.028 28 C -0.214 4.214 29 C -0.145 4.145 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.417 0.583 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.400 0.600 46 H -0.287 1.287 47 H -0.286 1.286 48 H 0.132 0.868 49 H 0.136 0.864 50 H 0.146 0.854 51 H 0.150 0.850 52 H 0.149 0.851 53 H 0.158 0.842 54 H 0.089 0.911 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.708 -0.362 0.239 2.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.237 4.237 4 C -0.195 4.195 5 O -0.285 6.285 6 C 0.396 3.604 7 O -0.485 6.485 8 N -0.349 5.349 9 C 0.032 3.968 10 H 0.124 0.876 11 C -0.156 4.156 12 C -0.117 4.117 13 H 0.124 0.876 14 C -0.011 4.011 15 O -0.225 6.225 16 C 0.101 3.899 17 C -0.107 4.107 18 C -0.183 4.183 19 O -0.369 6.369 20 Si 0.678 3.322 21 C -0.107 4.107 22 C -0.101 4.101 23 C -0.131 4.131 24 C -0.146 4.146 25 C -0.124 4.124 26 C -0.143 4.143 27 C -0.029 4.029 28 C -0.232 4.232 29 C -0.184 4.184 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.255 0.745 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.251 0.749 46 H -0.214 1.214 47 H -0.213 1.213 48 H 0.150 0.850 49 H 0.154 0.846 50 H 0.164 0.836 51 H 0.168 0.832 52 H 0.167 0.833 53 H 0.175 0.825 54 H 0.108 0.892 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.525 -0.555 -0.312 2.604 hybrid contribution 0.569 -0.494 0.210 0.782 sum 3.094 -1.049 -0.102 3.269 Atomic orbital electron populations 1.22474 0.94138 1.02852 1.04276 1.22352 0.94401 0.92555 0.81633 1.22470 1.01662 0.95258 1.04290 1.21892 1.02486 1.01203 0.93887 1.86310 1.71541 1.56643 1.13992 1.18441 0.78634 0.81442 0.81862 1.90903 1.42195 1.28065 1.87381 1.44768 1.54869 1.32731 1.02510 1.22553 0.96768 0.98759 0.78696 0.87587 1.23345 0.95794 1.04353 0.92091 1.22255 0.98099 0.98241 0.93104 0.87577 1.23054 0.87310 0.99334 0.91376 1.86097 1.45598 1.45549 1.45240 1.18457 0.93501 0.88451 0.89538 1.18848 0.95967 0.98524 0.97345 1.24788 0.95158 0.98254 1.00060 1.86457 1.46336 1.58439 1.45696 0.94327 0.83057 0.82116 0.72651 1.20899 0.98312 0.93496 0.98031 1.18197 0.95551 0.97412 0.98958 1.21246 0.99994 0.94134 0.97685 1.21197 0.93949 0.99489 0.99950 1.21290 0.98422 0.98241 0.94431 1.21291 0.98437 0.94413 1.00144 1.18097 0.94449 0.95580 0.94740 1.21269 1.01163 0.97103 1.03699 1.23581 0.98836 1.00997 0.94977 0.91822 0.92072 0.89436 0.89467 0.91867 0.91782 0.91263 0.91111 0.88299 0.74532 0.88598 0.87115 0.90172 0.90959 0.89963 0.74944 1.21399 1.21332 0.85041 0.84641 0.83619 0.83233 0.83289 0.82491 0.89230 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.71 8.37 71.98 0.60 -0.10 16 2 C 0.13 0.42 1.13 -10.79 -0.01 0.41 16 3 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 4 C -0.14 0.25 8.85 71.98 0.64 0.88 16 5 O -0.37 -2.15 9.94 -55.46 -0.55 -2.70 16 6 C 0.64 4.48 8.06 129.79 1.05 5.53 16 7 O -0.59 -7.41 11.48 19.79 0.23 -7.19 16 8 N -0.69 -0.13 5.36 -567.60 -3.04 -3.17 16 9 C 0.14 -0.19 4.24 45.52 0.19 0.00 16 10 H 0.11 0.24 7.46 -2.39 -0.02 0.22 16 11 C -0.12 0.83 7.39 31.12 0.23 1.06 16 12 C -0.10 0.37 4.01 -10.27 -0.04 0.33 16 13 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 14 C 0.06 -0.14 4.56 71.98 0.33 0.19 16 15 O -0.31 -1.60 9.40 -92.33 -0.87 -2.47 16 16 C 0.15 1.12 6.63 22.27 0.15 1.26 16 17 C -0.11 -0.94 5.29 -20.00 -0.11 -1.04 16 18 C -0.07 -0.28 2.34 71.24 0.17 -0.11 16 19 O -0.56 -2.29 12.86 -148.98 -1.92 -4.21 16 20 Si 0.77 0.28 30.16 68.60 2.07 2.35 16 21 C -0.09 -0.83 8.36 22.32 0.19 -0.64 16 22 C -0.10 -0.88 5.74 -21.28 -0.12 -1.01 16 23 C -0.11 -0.60 9.77 22.33 0.22 -0.38 16 24 C -0.13 -0.27 9.95 22.05 0.22 -0.05 16 25 C -0.11 -0.11 9.95 22.04 0.22 0.11 16 26 C -0.13 -0.31 9.77 22.34 0.22 -0.09 16 27 C -0.03 -0.20 5.74 -21.30 -0.12 -0.32 16 28 C -0.21 -1.10 8.74 22.42 0.20 -0.90 16 29 C -0.15 0.14 7.43 31.12 0.23 0.37 16 30 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 31 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 36 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H 0.42 -1.98 8.84 -92.71 -0.82 -2.80 16 40 H 0.10 -0.79 8.14 -2.38 -0.02 -0.81 16 41 H 0.11 -1.15 8.08 -2.39 -0.02 -1.17 16 42 H 0.08 -0.39 7.63 -2.38 -0.02 -0.41 16 43 H 0.07 -0.25 7.33 -2.39 -0.02 -0.27 16 44 H 0.08 0.15 7.80 -2.39 -0.02 0.13 16 45 H 0.40 -2.57 8.74 -74.06 -0.65 -3.22 16 46 H -0.29 -1.63 7.11 99.48 0.71 -0.93 16 47 H -0.29 -1.76 6.75 99.48 0.67 -1.08 16 48 H 0.13 0.99 4.78 -2.91 -0.01 0.98 16 49 H 0.14 0.27 8.06 -2.91 -0.02 0.25 16 50 H 0.15 -0.41 8.06 -2.91 -0.02 -0.43 16 51 H 0.15 -0.66 8.06 -2.91 -0.02 -0.69 16 52 H 0.15 -0.42 8.06 -2.91 -0.02 -0.44 16 53 H 0.16 -0.13 6.19 -2.91 -0.02 -0.15 16 54 H 0.09 -0.11 7.90 -2.39 -0.02 -0.13 16 55 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 Total: 0.00 -22.83 437.88 0.41 -22.41 By element: Atomic # 1 Polarization: -9.98 SS G_CDS: -0.55 Total: -10.53 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 5.04 Total: 5.50 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -3.04 Total: -3.17 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -3.11 Total: -16.56 kcal Atomic # 14 Polarization: 0.28 SS G_CDS: 2.07 Total: 2.35 kcal Total: -22.83 0.41 -22.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13906094_15734236.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.628 kcal (2) G-P(sol) polarization free energy of solvation -22.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds