Wall clock time and date at job start Tue Mar 9 2021 14:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47265 * 2 1 4 4 C 1.86301 * 109.47095 * 239.99931 * 2 1 3 5 5 C 1.86301 * 109.46905 * 120.00307 * 2 1 3 6 6 O 1.42892 * 109.47222 * 66.61558 * 5 2 1 7 7 C 1.35890 * 116.99810 * 282.09052 * 6 5 2 8 8 C 1.39817 * 119.56473 * 173.87592 * 7 6 5 9 9 C 1.50695 * 119.53611 * 359.72027 * 8 7 6 10 10 O 1.42903 * 109.47155 * 75.00242 * 9 8 7 11 11 Si 1.86295 * 109.47151 * 195.00335 * 9 8 7 12 12 H 1.48503 * 109.47371 * 59.99978 * 11 9 8 13 13 H 1.48503 * 109.47240 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47406 * 300.00034 * 11 9 8 15 15 C 1.36013 * 120.92920 * 180.02562 * 8 7 6 16 16 C 1.40557 * 119.73200 * 359.97438 * 15 8 7 17 17 C 1.40535 * 121.22748 * 179.97438 * 16 15 8 18 18 C 1.36098 * 119.67099 * 180.02562 * 17 16 15 19 19 C 1.39384 * 121.00024 * 0.02741 * 18 17 16 20 20 C 1.36075 * 120.98367 * 359.95340 * 19 18 17 21 21 C 1.40580 * 119.66031 * 0.04462 * 20 19 18 22 22 C 1.36602 * 119.56615 * 353.85103 * 7 6 5 23 23 H 1.08994 * 109.47108 * 295.47119 * 1 2 3 24 24 H 1.08995 * 109.46838 * 55.47264 * 1 2 3 25 25 H 1.09005 * 109.46916 * 175.46916 * 1 2 3 26 26 H 1.08995 * 109.47255 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47474 * 300.00162 * 3 2 1 28 28 H 1.08996 * 109.46934 * 59.99963 * 3 2 1 29 29 H 1.08999 * 109.47515 * 305.00460 * 4 2 1 30 30 H 1.09004 * 109.46944 * 65.00286 * 4 2 1 31 31 H 1.09000 * 109.46995 * 185.00284 * 4 2 1 32 32 H 1.08997 * 109.47005 * 306.60666 * 5 2 1 33 33 H 1.09006 * 109.46743 * 186.61369 * 5 2 1 34 34 H 1.09008 * 109.47010 * 315.00330 * 9 8 7 35 35 H 0.96697 * 113.99534 * 60.00278 * 10 9 8 36 36 H 1.08004 * 120.13462 * 179.97438 * 15 8 7 37 37 H 1.07994 * 120.16547 * 359.97438 * 17 16 15 38 38 H 1.07994 * 119.49887 * 179.97438 * 18 17 16 39 39 H 1.08003 * 119.50517 * 179.97438 * 19 18 17 40 40 H 1.08005 * 120.17054 * 180.02562 * 20 19 18 41 41 H 1.07996 * 120.19137 * 359.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 8 2.1386 -2.2628 1.4460 7 6 0.8536 -2.5948 1.7379 8 6 0.4236 -3.9129 1.5577 9 6 1.3901 -4.9449 1.0362 10 8 2.3015 -5.3114 2.0741 11 14 0.4479 -6.4514 0.4765 12 1 -0.4992 -6.0705 -0.6021 13 1 1.4003 -7.4681 -0.0379 14 1 -0.3086 -7.0163 1.6228 15 6 -0.8564 -4.2756 1.8405 16 6 -1.7629 -3.3152 2.3215 17 6 -3.0927 -3.6552 2.6232 18 6 -3.9439 -2.6997 3.0866 19 6 -3.5176 -1.3850 3.2671 20 6 -2.2376 -1.0188 2.9860 21 6 -1.3292 -1.9780 2.5054 22 6 -0.0009 -1.6364 2.2041 23 1 -0.3633 0.4419 0.9277 24 1 -0.3633 0.5825 -0.8466 25 1 -0.3633 -1.0245 -0.0812 26 1 3.5740 1.7564 0.0005 27 1 2.1208 2.2703 -0.8899 28 1 2.1207 2.2702 0.8900 29 1 2.0494 -1.8768 -1.5671 30 1 2.1957 -0.3153 -2.4089 31 1 3.5703 -0.9565 -1.4774 32 1 2.0273 -0.4373 2.4071 33 1 3.5676 -0.7769 1.5823 34 1 1.9454 -4.5302 0.1948 35 1 1.8758 -5.6886 2.8561 36 1 -1.1749 -5.2975 1.6961 37 1 -3.4377 -4.6695 2.4872 38 1 -4.9653 -2.9640 3.3172 39 1 -4.2136 -0.6460 3.6359 40 1 -1.9212 0.0036 3.1312 41 1 0.3431 -0.6217 2.3400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13906094_3095236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:55:30 Heat of formation + Delta-G solvation = -56.648847 kcal Electronic energy + Delta-G solvation = -21717.369468 eV Core-core repulsion = 18686.326464 eV Total energy + Delta-G solvation = -3031.043003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.125 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.85353 -39.75024 -38.13658 -36.22591 -33.74223 -31.67834 -30.06082 -29.76011 -28.50410 -28.40975 -27.75003 -26.76748 -23.68288 -22.96109 -22.87401 -19.28592 -18.74329 -17.99495 -17.17768 -16.72814 -16.38130 -16.10385 -15.87151 -15.56323 -15.20214 -14.77128 -14.50705 -14.42106 -14.21566 -14.03042 -13.96864 -13.84811 -13.54492 -13.40064 -13.34384 -13.15051 -13.04802 -12.69355 -12.51936 -12.18343 -12.12987 -11.89008 -11.64736 -11.57283 -11.01891 -10.91069 -10.86149 -10.40317 -10.31582 -9.20928 -8.57863 -0.46239 0.08935 1.08130 1.15803 1.40137 1.43266 1.51936 1.64734 1.72037 1.91630 2.00190 2.45361 2.47202 3.14502 3.51970 3.56563 3.76702 3.95660 4.03122 4.08107 4.16793 4.24702 4.32448 4.46449 4.55514 4.61108 4.61947 4.63056 4.65256 4.72516 4.75923 4.76403 4.80008 4.89837 5.00376 5.08039 5.24241 5.35625 5.37411 5.51104 5.54745 5.60454 5.62349 5.69451 6.00973 6.45646 6.64691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 0.985 3.015 3 C -0.447 4.447 4 C -0.442 4.442 5 C -0.247 4.247 6 O -0.279 6.279 7 C 0.152 3.848 8 C -0.131 4.131 9 C -0.072 4.072 10 O -0.531 6.531 11 Si 0.941 3.059 12 H -0.247 1.247 13 H -0.250 1.250 14 H -0.251 1.251 15 C -0.080 4.080 16 C -0.080 4.080 17 C -0.094 4.094 18 C -0.129 4.129 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.007 4.007 22 C -0.210 4.210 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.373 0.627 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 1.599 -0.021 2.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.181 2.819 3 C -0.555 4.555 4 C -0.550 4.550 5 C -0.367 4.367 6 O -0.191 6.191 7 C 0.106 3.894 8 C -0.132 4.132 9 C -0.183 4.183 10 O -0.335 6.335 11 Si 0.764 3.236 12 H -0.170 1.170 13 H -0.174 1.174 14 H -0.175 1.175 15 C -0.097 4.097 16 C -0.080 4.080 17 C -0.112 4.112 18 C -0.147 4.147 19 C -0.121 4.121 20 C -0.137 4.137 21 C -0.007 4.007 22 C -0.229 4.229 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.219 0.781 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.444 0.950 -0.754 1.885 hybrid contribution -0.286 0.542 0.740 0.961 sum -1.730 1.491 -0.014 2.284 Atomic orbital electron populations 1.26441 1.19493 1.05038 1.04502 0.79910 0.68187 0.66814 0.66975 1.26055 1.06473 1.18166 1.04841 1.25990 1.06387 1.08184 1.14463 1.28204 1.06865 0.86219 1.15444 1.86109 1.24081 1.25836 1.83093 1.18376 0.84193 0.92607 0.94258 1.19414 0.95140 0.93530 1.05102 1.24919 0.96240 1.02562 0.94592 1.86572 1.34330 1.83901 1.28740 0.85850 0.79076 0.77604 0.81091 1.17017 1.17404 1.17468 1.20887 0.92115 0.99195 0.97552 1.17921 0.94401 0.93013 1.02687 1.21021 0.92251 0.99717 0.98193 1.20846 1.00042 0.93273 1.00509 1.20912 0.96069 0.96405 0.98669 1.20984 0.93532 0.98879 1.00318 1.17765 0.93149 0.92696 0.97063 1.21108 0.93868 1.00178 1.07757 0.91014 0.91150 0.90666 0.90963 0.90698 0.91075 0.90909 0.91107 0.91020 0.91022 0.87294 0.86266 0.78094 0.84854 0.85547 0.85865 0.85873 0.85612 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.43 7.04 101.05 0.71 1.14 16 2 Si 0.98 -2.18 11.67 -169.99 -1.98 -4.17 16 3 C -0.45 0.91 8.65 101.05 0.87 1.78 16 4 C -0.44 0.34 8.65 101.05 0.87 1.21 16 5 C -0.25 0.18 5.30 101.05 0.54 0.72 16 6 O -0.28 -0.58 9.06 -19.39 -0.18 -0.75 16 7 C 0.15 0.32 5.76 -39.58 -0.23 0.09 16 8 C -0.13 -0.23 5.25 -104.83 -0.55 -0.78 16 9 C -0.07 -0.07 2.35 36.00 0.08 0.02 16 10 O -0.53 -0.93 12.88 -35.23 -0.45 -1.39 16 11 Si 0.94 0.00 25.45 -169.99 -4.33 -4.33 16 12 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 13 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 14 H -0.25 0.11 6.73 56.52 0.38 0.50 16 15 C -0.08 -0.10 8.36 -39.51 -0.33 -0.43 16 16 C -0.08 -0.16 5.74 -106.81 -0.61 -0.78 16 17 C -0.09 -0.08 9.77 -39.49 -0.39 -0.47 16 18 C -0.13 -0.06 9.95 -39.92 -0.40 -0.45 16 19 C -0.10 -0.04 9.95 -39.93 -0.40 -0.44 16 20 C -0.12 -0.11 9.77 -39.48 -0.39 -0.49 16 21 C -0.01 -0.01 5.74 -106.84 -0.61 -0.63 16 22 C -0.21 -0.28 5.34 -39.35 -0.21 -0.49 16 23 H 0.07 -0.10 6.53 -51.93 -0.34 -0.44 16 24 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 25 H 0.07 0.03 6.56 -51.93 -0.34 -0.31 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 30 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 31 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 32 H 0.07 -0.11 6.03 -51.93 -0.31 -0.42 16 33 H 0.11 -0.18 7.96 -51.93 -0.41 -0.60 16 34 H 0.12 0.09 7.80 -51.92 -0.41 -0.32 16 35 H 0.37 -0.60 8.70 45.56 0.40 -0.20 16 36 H 0.13 -0.06 4.77 -52.48 -0.25 -0.32 16 37 H 0.13 -0.14 8.06 -52.49 -0.42 -0.56 16 38 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 39 H 0.12 -0.18 8.06 -52.48 -0.42 -0.61 16 40 H 0.13 -0.13 8.06 -52.48 -0.42 -0.55 16 41 H 0.14 -0.09 4.15 -52.49 -0.22 -0.30 16 LS Contribution 328.11 15.07 4.94 4.94 Total: 0.00 -5.30 328.11 -8.31 -13.62 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -5.29 Total: -7.93 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.03 Total: 0.00 kcal Atomic # 8 Polarization: -1.51 SS G_CDS: -0.63 Total: -2.14 kcal Atomic # 14 Polarization: -2.18 SS G_CDS: -6.31 Total: -8.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -5.30 -8.31 -13.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13906094_3095236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.033 kcal (2) G-P(sol) polarization free energy of solvation -5.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds