Wall clock time and date at job start Tue Mar 9 2021 14:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47265 * 2 1 4 4 C 1.86301 * 109.47095 * 239.99931 * 2 1 3 5 5 C 1.86301 * 109.46905 * 120.00307 * 2 1 3 6 6 O 1.42892 * 109.47222 * 66.61558 * 5 2 1 7 7 C 1.35890 * 116.99810 * 282.09052 * 6 5 2 8 8 C 1.39817 * 119.56473 * 173.87592 * 7 6 5 9 9 C 1.50695 * 119.53611 * 359.72027 * 8 7 6 10 10 O 1.42903 * 109.47155 * 75.00242 * 9 8 7 11 11 Si 1.86295 * 109.47151 * 195.00335 * 9 8 7 12 12 H 1.48503 * 109.47371 * 59.99978 * 11 9 8 13 13 H 1.48503 * 109.47240 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47406 * 300.00034 * 11 9 8 15 15 C 1.36013 * 120.92920 * 180.02562 * 8 7 6 16 16 C 1.40557 * 119.73200 * 359.97438 * 15 8 7 17 17 C 1.40535 * 121.22748 * 179.97438 * 16 15 8 18 18 C 1.36098 * 119.67099 * 180.02562 * 17 16 15 19 19 C 1.39384 * 121.00024 * 0.02741 * 18 17 16 20 20 C 1.36075 * 120.98367 * 359.95340 * 19 18 17 21 21 C 1.40580 * 119.66031 * 0.04462 * 20 19 18 22 22 C 1.36602 * 119.56615 * 353.85103 * 7 6 5 23 23 H 1.08994 * 109.47108 * 295.47119 * 1 2 3 24 24 H 1.08995 * 109.46838 * 55.47264 * 1 2 3 25 25 H 1.09005 * 109.46916 * 175.46916 * 1 2 3 26 26 H 1.08995 * 109.47255 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47474 * 300.00162 * 3 2 1 28 28 H 1.08996 * 109.46934 * 59.99963 * 3 2 1 29 29 H 1.08999 * 109.47515 * 305.00460 * 4 2 1 30 30 H 1.09004 * 109.46944 * 65.00286 * 4 2 1 31 31 H 1.09000 * 109.46995 * 185.00284 * 4 2 1 32 32 H 1.08997 * 109.47005 * 306.60666 * 5 2 1 33 33 H 1.09006 * 109.46743 * 186.61369 * 5 2 1 34 34 H 1.09008 * 109.47010 * 315.00330 * 9 8 7 35 35 H 0.96697 * 113.99534 * 60.00278 * 10 9 8 36 36 H 1.08004 * 120.13462 * 179.97438 * 15 8 7 37 37 H 1.07994 * 120.16547 * 359.97438 * 17 16 15 38 38 H 1.07994 * 119.49887 * 179.97438 * 18 17 16 39 39 H 1.08003 * 119.50517 * 179.97438 * 19 18 17 40 40 H 1.08005 * 120.17054 * 180.02562 * 20 19 18 41 41 H 1.07996 * 120.19137 * 359.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 8 2.1386 -2.2628 1.4460 7 6 0.8536 -2.5948 1.7379 8 6 0.4236 -3.9129 1.5577 9 6 1.3901 -4.9449 1.0362 10 8 2.3015 -5.3114 2.0741 11 14 0.4479 -6.4514 0.4765 12 1 -0.4992 -6.0705 -0.6021 13 1 1.4003 -7.4681 -0.0379 14 1 -0.3086 -7.0163 1.6228 15 6 -0.8564 -4.2756 1.8405 16 6 -1.7629 -3.3152 2.3215 17 6 -3.0927 -3.6552 2.6232 18 6 -3.9439 -2.6997 3.0866 19 6 -3.5176 -1.3850 3.2671 20 6 -2.2376 -1.0188 2.9860 21 6 -1.3292 -1.9780 2.5054 22 6 -0.0009 -1.6364 2.2041 23 1 -0.3633 0.4419 0.9277 24 1 -0.3633 0.5825 -0.8466 25 1 -0.3633 -1.0245 -0.0812 26 1 3.5740 1.7564 0.0005 27 1 2.1208 2.2703 -0.8899 28 1 2.1207 2.2702 0.8900 29 1 2.0494 -1.8768 -1.5671 30 1 2.1957 -0.3153 -2.4089 31 1 3.5703 -0.9565 -1.4774 32 1 2.0273 -0.4373 2.4071 33 1 3.5676 -0.7769 1.5823 34 1 1.9454 -4.5302 0.1948 35 1 1.8758 -5.6886 2.8561 36 1 -1.1749 -5.2975 1.6961 37 1 -3.4377 -4.6695 2.4872 38 1 -4.9653 -2.9640 3.3172 39 1 -4.2136 -0.6460 3.6359 40 1 -1.9212 0.0036 3.1312 41 1 0.3431 -0.6217 2.3400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13906094_3095236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:55:30 Heat of formation + Delta-G solvation = -48.331853 kcal Electronic energy + Delta-G solvation = -21717.008816 eV Core-core repulsion = 18686.326464 eV Total energy + Delta-G solvation = -3030.682351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.88264 -39.76930 -38.19778 -36.26309 -33.76953 -31.70298 -30.06536 -29.66143 -28.40722 -28.30526 -27.69665 -26.80941 -23.69952 -22.98376 -22.90867 -19.30820 -18.78983 -18.01999 -17.21380 -16.74964 -16.38031 -16.11627 -15.90073 -15.58260 -15.22486 -14.79023 -14.50245 -14.41029 -14.15482 -13.97441 -13.87441 -13.79838 -13.48371 -13.34889 -13.24191 -13.08020 -12.98101 -12.67717 -12.51892 -12.21804 -12.12585 -11.89826 -11.65360 -11.60740 -10.97443 -10.83791 -10.78436 -10.37792 -10.36592 -9.25099 -8.61109 -0.49417 0.03474 1.04465 1.12963 1.39371 1.49541 1.55867 1.79396 1.85108 1.87821 1.97180 2.48942 2.57502 3.10446 3.49741 3.55916 3.75836 3.97154 4.05803 4.09116 4.18240 4.30000 4.35379 4.45186 4.57172 4.61367 4.72759 4.76947 4.77533 4.80543 4.81908 4.82263 4.86996 4.89683 4.99162 5.07793 5.23621 5.32003 5.52054 5.58572 5.60140 5.60791 5.62779 5.67152 6.02092 6.43510 6.71664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.050 2.950 3 C -0.453 4.453 4 C -0.461 4.461 5 C -0.267 4.267 6 O -0.297 6.297 7 C 0.137 3.863 8 C -0.143 4.143 9 C -0.077 4.077 10 O -0.549 6.549 11 Si 0.976 3.024 12 H -0.254 1.254 13 H -0.271 1.271 14 H -0.239 1.239 15 C -0.083 4.083 16 C -0.099 4.099 17 C -0.105 4.105 18 C -0.135 4.135 19 C -0.109 4.109 20 C -0.130 4.130 21 C -0.024 4.024 22 C -0.211 4.211 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.385 0.615 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.276 2.197 0.426 3.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.243 2.757 3 C -0.561 4.561 4 C -0.568 4.568 5 C -0.386 4.386 6 O -0.209 6.209 7 C 0.091 3.909 8 C -0.143 4.143 9 C -0.187 4.187 10 O -0.355 6.355 11 Si 0.799 3.201 12 H -0.177 1.177 13 H -0.196 1.196 14 H -0.162 1.162 15 C -0.101 4.101 16 C -0.099 4.099 17 C -0.123 4.123 18 C -0.153 4.153 19 C -0.127 4.127 20 C -0.148 4.148 21 C -0.024 4.024 22 C -0.230 4.230 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.234 0.766 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.105 1.540 -0.293 2.625 hybrid contribution -0.084 0.374 0.606 0.718 sum -2.189 1.914 0.313 2.925 Atomic orbital electron populations 1.26595 1.20986 1.04080 1.04888 0.78916 0.66306 0.65869 0.64640 1.26101 1.06763 1.18018 1.05228 1.26233 1.06492 1.08012 1.16029 1.28570 1.07667 0.85342 1.16978 1.86078 1.24192 1.27349 1.83286 1.18554 0.84419 0.93065 0.94848 1.19569 0.95521 0.93770 1.05482 1.25047 0.96152 1.03204 0.94275 1.86524 1.35298 1.84134 1.29570 0.85356 0.77995 0.75961 0.80829 1.17727 1.19552 1.16227 1.21054 0.91885 0.99837 0.97310 1.18195 0.95173 0.93368 1.03185 1.21288 0.91945 1.00818 0.98238 1.21152 1.00896 0.93280 0.99973 1.21220 0.96280 0.96960 0.98209 1.21236 0.93722 0.99515 1.00336 1.18015 0.93658 0.93164 0.97551 1.21272 0.93663 1.00749 1.07301 0.90433 0.90956 0.92241 0.90647 0.90602 0.90411 0.92007 0.90878 0.91047 0.90255 0.86504 0.86856 0.76639 0.83470 0.83908 0.84067 0.84023 0.84086 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.69 7.04 113.37 0.80 1.49 16 2 Si 1.05 -4.45 11.67 68.60 0.80 -3.65 16 3 C -0.45 2.18 8.65 113.37 0.98 3.16 16 4 C -0.46 0.25 8.65 113.37 0.98 1.23 16 5 C -0.27 0.28 5.30 113.37 0.60 0.88 16 6 O -0.30 -1.58 9.06 -92.31 -0.84 -2.42 16 7 C 0.14 0.74 5.76 22.27 0.13 0.87 16 8 C -0.14 -0.66 5.25 -20.00 -0.11 -0.77 16 9 C -0.08 -0.24 2.35 71.23 0.17 -0.08 16 10 O -0.55 -2.54 12.88 -148.98 -1.92 -4.46 16 11 Si 0.98 0.49 25.45 68.60 1.75 2.24 16 12 H -0.25 -0.36 7.11 99.48 0.71 0.35 16 13 H -0.27 -0.99 7.11 99.48 0.71 -0.28 16 14 H -0.24 0.38 6.73 99.48 0.67 1.05 16 15 C -0.08 -0.27 8.36 22.32 0.19 -0.08 16 16 C -0.10 -0.46 5.74 -21.28 -0.12 -0.58 16 17 C -0.11 -0.18 9.77 22.33 0.22 0.04 16 18 C -0.14 -0.04 9.95 22.05 0.22 0.17 16 19 C -0.11 -0.03 9.95 22.04 0.22 0.19 16 20 C -0.13 -0.22 9.77 22.34 0.22 0.00 16 21 C -0.02 -0.11 5.74 -21.30 -0.12 -0.23 16 22 C -0.21 -0.72 5.34 22.42 0.12 -0.60 16 23 H 0.08 -0.22 6.53 -2.39 -0.02 -0.24 16 24 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 25 H 0.06 0.13 6.56 -2.38 -0.02 0.11 16 26 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 27 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 28 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 29 H 0.06 0.10 7.96 -2.39 -0.02 0.08 16 30 H 0.07 -0.09 7.96 -2.38 -0.02 -0.11 16 31 H 0.07 -0.05 7.96 -2.39 -0.02 -0.07 16 32 H 0.08 -0.24 6.03 -2.39 -0.01 -0.25 16 33 H 0.12 -0.37 7.96 -2.38 -0.02 -0.39 16 34 H 0.11 0.40 7.80 -2.38 -0.02 0.38 16 35 H 0.39 -0.89 8.70 -74.06 -0.64 -1.54 16 36 H 0.15 -0.13 4.77 -2.91 -0.01 -0.14 16 37 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 38 H 0.14 -0.56 8.06 -2.91 -0.02 -0.59 16 39 H 0.14 -0.59 8.06 -2.91 -0.02 -0.61 16 40 H 0.14 -0.35 8.06 -2.91 -0.02 -0.38 16 41 H 0.15 -0.15 4.15 -2.91 -0.01 -0.16 16 Total: 0.00 -12.56 328.11 5.38 -7.17 By element: Atomic # 1 Polarization: -5.70 SS G_CDS: 1.10 Total: -4.59 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 4.49 Total: 5.71 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -2.76 Total: -6.88 kcal Atomic # 14 Polarization: -3.95 SS G_CDS: 2.55 Total: -1.41 kcal Total: -12.56 5.38 -7.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13906094_3095236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.159 kcal (2) G-P(sol) polarization free energy of solvation -12.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds