Wall clock time and date at job start Tue Mar 9 2021 15:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46973 * 2 1 4 4 C 1.50696 * 109.47121 * 120.00106 * 2 1 3 5 5 C 1.38249 * 119.94710 * 300.00216 * 4 2 1 6 6 C 1.38165 * 120.05605 * 180.02562 * 5 4 2 7 7 C 1.38708 * 119.94349 * 359.97438 * 6 5 4 8 8 O 1.35902 * 120.05045 * 179.97438 * 7 6 5 9 9 C 1.42902 * 117.00410 * 6.17634 * 8 7 6 10 10 Si 1.86301 * 109.46800 * 77.75013 * 9 8 7 11 11 C 1.86309 * 109.47005 * 66.19786 * 10 9 8 12 12 C 1.86291 * 109.47262 * 186.19773 * 10 9 8 13 13 C 1.86299 * 109.47238 * 306.20133 * 10 9 8 14 14 C 1.38743 * 119.89344 * 0.02562 * 7 6 5 15 15 C 1.50701 * 120.02962 * 179.97438 * 14 7 6 16 16 O 1.42895 * 109.47355 * 75.00255 * 15 14 7 17 17 Si 1.86311 * 109.46916 * 195.00195 * 15 14 7 18 18 H 1.48496 * 109.47182 * 60.00235 * 17 15 14 19 19 H 1.48494 * 109.46732 * 299.99690 * 17 15 14 20 20 H 1.48501 * 109.46830 * 180.02562 * 17 15 14 21 21 C 1.38128 * 119.94190 * 0.25334 * 14 7 6 22 22 H 1.09002 * 109.47621 * 299.99537 * 1 2 3 23 23 H 1.08998 * 109.47183 * 60.00038 * 1 2 3 24 24 H 1.09005 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47335 * 240.00008 * 2 1 3 26 26 H 1.08999 * 109.47097 * 60.00582 * 3 2 1 27 27 H 1.08998 * 109.46929 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47135 * 299.99991 * 3 2 1 29 29 H 1.08001 * 119.96640 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.01938 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47206 * 197.75077 * 9 8 7 32 32 H 1.09003 * 109.47273 * 317.75446 * 9 8 7 33 33 H 1.08995 * 109.46981 * 60.00192 * 11 10 9 34 34 H 1.08997 * 109.47278 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.46830 * 299.99662 * 11 10 9 36 36 H 1.08999 * 109.47583 * 60.00235 * 12 10 9 37 37 H 1.09003 * 109.47409 * 180.02562 * 12 10 9 38 38 H 1.09005 * 109.47309 * 300.00171 * 12 10 9 39 39 H 1.09005 * 109.47513 * 54.73825 * 13 10 9 40 40 H 1.09002 * 109.47442 * 174.73760 * 13 10 9 41 41 H 1.09004 * 109.47050 * 294.73775 * 13 10 9 42 42 H 1.09000 * 109.47042 * 315.00018 * 15 14 7 43 43 H 0.96699 * 113.99710 * 300.00524 * 16 15 14 44 44 H 1.08002 * 119.96809 * 179.72140 * 21 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6976 -0.2372 2.4855 6 6 2.1573 -0.8865 3.6151 7 6 2.9549 -2.0143 3.4891 8 8 3.4087 -2.6543 4.5988 9 6 2.9173 -2.1948 5.8595 10 14 1.1924 -2.8457 6.1281 11 6 1.2485 -4.6997 6.3027 12 6 0.4807 -2.0972 7.6785 13 6 0.1233 -2.3912 4.6717 14 6 3.2894 -2.4873 2.2284 15 6 4.1562 -3.7120 2.0879 16 8 3.3868 -4.8775 2.3908 17 14 4.7929 -3.8251 0.3407 18 1 5.5925 -2.6140 0.0259 19 1 3.6467 -3.9195 -0.5986 20 1 5.6466 -5.0323 0.2021 21 6 2.8320 -1.8313 1.1022 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.0769 0.6413 2.5830 30 1 1.8959 -0.5160 4.5953 31 1 3.5691 -2.5533 6.6561 32 1 2.8996 -1.1049 5.8672 33 1 1.8740 -4.9656 7.1549 34 1 0.2394 -5.0806 6.4595 35 1 1.6649 -5.1376 5.3956 36 1 0.4478 -1.0125 7.5764 37 1 -0.5283 -2.4783 7.8359 38 1 1.1062 -2.3631 8.5307 39 1 0.5888 -2.7494 3.7534 40 1 -0.8587 -2.8507 4.7843 41 1 0.0143 -1.3077 4.6250 42 1 4.9976 -3.6427 2.7775 43 1 3.0230 -4.8866 3.2867 44 1 3.0959 -2.1965 0.1207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13942222_3095236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:02:55 Heat of formation + Delta-G solvation = -96.816887 kcal Electronic energy + Delta-G solvation = -21556.068233 eV Core-core repulsion = 18596.886596 eV Total energy + Delta-G solvation = -2959.181637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.156 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54454 -39.05393 -37.66401 -35.60235 -32.72084 -30.40564 -29.77898 -28.55637 -28.39429 -28.03426 -27.78099 -26.52555 -23.69554 -23.02120 -20.61369 -19.17239 -18.04477 -17.57229 -16.80990 -16.50372 -16.00711 -15.49530 -15.46162 -15.11727 -14.68517 -14.47479 -14.27447 -14.10000 -14.01745 -13.93672 -13.72994 -13.65494 -13.42519 -13.32372 -13.18653 -13.15424 -13.04892 -12.66973 -12.38900 -12.13643 -11.97256 -11.91491 -11.75945 -11.59373 -11.06422 -10.97500 -10.93388 -10.85244 -10.67715 -9.80719 -8.84094 0.31794 0.43993 1.31321 1.40326 1.58858 1.61090 1.64295 1.68429 2.06788 2.40938 2.42299 2.73171 3.62877 3.72862 3.81563 4.01616 4.05455 4.10889 4.25279 4.28950 4.37462 4.51265 4.51982 4.56390 4.57522 4.59334 4.69153 4.69891 4.70908 4.72976 4.74702 4.76888 4.84842 4.93384 5.07396 5.08665 5.26528 5.33422 5.33625 5.36788 5.40341 5.46858 5.54063 5.70495 5.78831 6.40436 6.70707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.105 4.105 5 C -0.072 4.072 6 C -0.195 4.195 7 C 0.131 3.869 8 O -0.295 6.295 9 C -0.245 4.245 10 Si 0.989 3.011 11 C -0.444 4.444 12 C -0.449 4.449 13 C -0.448 4.448 14 C -0.144 4.144 15 C -0.082 4.082 16 O -0.538 6.538 17 Si 1.013 2.987 18 H -0.249 1.249 19 H -0.252 1.252 20 H -0.257 1.257 21 C -0.085 4.085 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.367 0.633 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 2.258 1.821 3.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.105 4.105 5 C -0.090 4.090 6 C -0.213 4.213 7 C 0.085 3.915 8 O -0.208 6.208 9 C -0.365 4.365 10 Si 1.185 2.815 11 C -0.552 4.552 12 C -0.557 4.557 13 C -0.556 4.556 14 C -0.145 4.145 15 C -0.191 4.191 16 O -0.343 6.343 17 Si 0.833 3.167 18 H -0.173 1.173 19 H -0.176 1.176 20 H -0.181 1.181 21 C -0.103 4.103 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.151 0.849 31 H 0.126 0.874 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.215 0.785 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.592 1.911 0.404 2.041 hybrid contribution -0.452 0.509 1.466 1.616 sum -1.044 2.420 1.870 3.231 Atomic orbital electron populations 1.21867 0.94164 1.02162 1.02018 1.20103 0.96098 0.96046 0.95173 1.21875 1.01305 0.95015 1.02053 1.19707 0.99415 0.96427 0.94943 1.20770 0.98174 0.98881 0.91211 1.21233 1.02792 0.97342 0.99952 1.18747 0.94423 0.91786 0.86510 1.85970 1.66116 1.56239 1.12489 1.28182 1.17956 1.04901 0.85469 0.79845 0.65036 0.68574 0.68052 1.26024 1.04669 1.19590 1.04928 1.26082 1.07240 1.07078 1.15315 1.26439 1.09605 1.05477 1.14085 1.19538 1.04411 0.99924 0.90600 1.25175 0.95510 0.83997 1.14386 1.86684 1.71257 1.39669 1.36713 0.84493 0.79266 0.80503 0.72455 1.17269 1.17607 1.18092 1.20841 0.96913 0.95062 0.97455 0.92462 0.92254 0.92417 0.90430 0.92467 0.92464 0.92218 0.85663 0.84943 0.87373 0.90992 0.91115 0.90992 0.90790 0.91119 0.90659 0.91003 0.90614 0.91178 0.90921 0.90603 0.78525 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.07 9.01 37.16 0.33 0.41 16 2 C -0.06 0.00 3.09 -91.78 -0.28 -0.28 16 3 C -0.15 0.09 9.01 37.16 0.33 0.43 16 4 C -0.10 -0.12 4.78 -104.60 -0.50 -0.62 16 5 C -0.07 -0.03 8.70 -39.60 -0.34 -0.38 16 6 C -0.19 -0.07 5.61 -39.43 -0.22 -0.29 16 7 C 0.13 0.19 5.09 -39.22 -0.20 -0.01 16 8 O -0.30 -0.22 8.70 -19.43 -0.17 -0.39 16 9 C -0.24 0.43 5.31 101.05 0.54 0.97 16 10 Si 0.99 -2.93 11.68 -169.99 -1.99 -4.91 16 11 C -0.44 0.74 8.65 101.05 0.87 1.62 16 12 C -0.45 1.11 8.65 101.05 0.87 1.98 16 13 C -0.45 0.56 7.03 101.05 0.71 1.27 16 14 C -0.14 -0.31 5.28 -104.48 -0.55 -0.86 16 15 C -0.08 -0.16 2.33 36.01 0.08 -0.07 16 16 O -0.54 -1.36 12.65 -35.23 -0.45 -1.80 16 17 Si 1.01 1.58 25.74 -169.99 -4.37 -2.80 16 18 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 19 H -0.25 -0.49 6.74 56.52 0.38 -0.11 16 20 H -0.26 -0.64 7.11 56.52 0.40 -0.24 16 21 C -0.08 -0.16 8.28 -39.60 -0.33 -0.49 16 22 H 0.06 -0.05 7.38 -51.93 -0.38 -0.43 16 23 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 24 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 25 H 0.08 -0.02 7.87 -51.93 -0.41 -0.43 16 26 H 0.06 -0.05 7.38 -51.93 -0.38 -0.44 16 27 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 28 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 29 H 0.13 -0.14 7.09 -52.49 -0.37 -0.51 16 30 H 0.13 -0.22 4.75 -52.49 -0.25 -0.47 16 31 H 0.11 -0.30 7.96 -51.93 -0.41 -0.71 16 32 H 0.07 -0.17 6.08 -51.93 -0.32 -0.49 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 36 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 37 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 38 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 39 H 0.07 0.02 6.25 -51.93 -0.32 -0.30 16 40 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 41 H 0.07 -0.11 6.54 -51.93 -0.34 -0.45 16 42 H 0.08 0.09 7.83 -51.93 -0.41 -0.32 16 43 H 0.37 0.09 8.61 45.56 0.39 0.49 16 44 H 0.13 0.14 4.77 -52.49 -0.25 -0.11 16 LS Contribution 341.38 15.07 5.14 5.14 Total: 0.00 -3.81 341.38 -7.37 -11.18 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: -6.86 Total: -10.09 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 1.32 Total: 3.67 kcal Atomic # 8 Polarization: -1.58 SS G_CDS: -0.61 Total: -2.20 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: -6.36 Total: -7.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -3.81 -7.37 -11.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13942222_3095236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.637 kcal (2) G-P(sol) polarization free energy of solvation -3.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds