Wall clock time and date at job start Tue Mar 9 2021 15:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46973 * 2 1 4 4 C 1.50696 * 109.47121 * 120.00106 * 2 1 3 5 5 C 1.38249 * 119.94710 * 300.00216 * 4 2 1 6 6 C 1.38165 * 120.05605 * 180.02562 * 5 4 2 7 7 C 1.38708 * 119.94349 * 359.97438 * 6 5 4 8 8 O 1.35902 * 120.05045 * 179.97438 * 7 6 5 9 9 C 1.42902 * 117.00410 * 6.17634 * 8 7 6 10 10 Si 1.86301 * 109.46800 * 77.75013 * 9 8 7 11 11 C 1.86309 * 109.47005 * 66.19786 * 10 9 8 12 12 C 1.86291 * 109.47262 * 186.19773 * 10 9 8 13 13 C 1.86299 * 109.47238 * 306.20133 * 10 9 8 14 14 C 1.38743 * 119.89344 * 0.02562 * 7 6 5 15 15 C 1.50701 * 120.02962 * 179.97438 * 14 7 6 16 16 O 1.42895 * 109.47355 * 75.00255 * 15 14 7 17 17 Si 1.86311 * 109.46916 * 195.00195 * 15 14 7 18 18 H 1.48496 * 109.47182 * 60.00235 * 17 15 14 19 19 H 1.48494 * 109.46732 * 299.99690 * 17 15 14 20 20 H 1.48501 * 109.46830 * 180.02562 * 17 15 14 21 21 C 1.38128 * 119.94190 * 0.25334 * 14 7 6 22 22 H 1.09002 * 109.47621 * 299.99537 * 1 2 3 23 23 H 1.08998 * 109.47183 * 60.00038 * 1 2 3 24 24 H 1.09005 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47335 * 240.00008 * 2 1 3 26 26 H 1.08999 * 109.47097 * 60.00582 * 3 2 1 27 27 H 1.08998 * 109.46929 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47135 * 299.99991 * 3 2 1 29 29 H 1.08001 * 119.96640 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.01938 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47206 * 197.75077 * 9 8 7 32 32 H 1.09003 * 109.47273 * 317.75446 * 9 8 7 33 33 H 1.08995 * 109.46981 * 60.00192 * 11 10 9 34 34 H 1.08997 * 109.47278 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.46830 * 299.99662 * 11 10 9 36 36 H 1.08999 * 109.47583 * 60.00235 * 12 10 9 37 37 H 1.09003 * 109.47409 * 180.02562 * 12 10 9 38 38 H 1.09005 * 109.47309 * 300.00171 * 12 10 9 39 39 H 1.09005 * 109.47513 * 54.73825 * 13 10 9 40 40 H 1.09002 * 109.47442 * 174.73760 * 13 10 9 41 41 H 1.09004 * 109.47050 * 294.73775 * 13 10 9 42 42 H 1.09000 * 109.47042 * 315.00018 * 15 14 7 43 43 H 0.96699 * 113.99710 * 300.00524 * 16 15 14 44 44 H 1.08002 * 119.96809 * 179.72140 * 21 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6976 -0.2372 2.4855 6 6 2.1573 -0.8865 3.6151 7 6 2.9549 -2.0143 3.4891 8 8 3.4087 -2.6543 4.5988 9 6 2.9173 -2.1948 5.8595 10 14 1.1924 -2.8457 6.1281 11 6 1.2485 -4.6997 6.3027 12 6 0.4807 -2.0972 7.6785 13 6 0.1233 -2.3912 4.6717 14 6 3.2894 -2.4873 2.2284 15 6 4.1562 -3.7120 2.0879 16 8 3.3868 -4.8775 2.3908 17 14 4.7929 -3.8251 0.3407 18 1 5.5925 -2.6140 0.0259 19 1 3.6467 -3.9195 -0.5986 20 1 5.6466 -5.0323 0.2021 21 6 2.8320 -1.8313 1.1022 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.0769 0.6413 2.5830 30 1 1.8959 -0.5160 4.5953 31 1 3.5691 -2.5533 6.6561 32 1 2.8996 -1.1049 5.8672 33 1 1.8740 -4.9656 7.1549 34 1 0.2394 -5.0806 6.4595 35 1 1.6649 -5.1376 5.3956 36 1 0.4478 -1.0125 7.5764 37 1 -0.5283 -2.4783 7.8359 38 1 1.1062 -2.3631 8.5307 39 1 0.5888 -2.7494 3.7534 40 1 -0.8587 -2.8507 4.7843 41 1 0.0143 -1.3077 4.6250 42 1 4.9976 -3.6427 2.7775 43 1 3.0230 -4.8866 3.2867 44 1 3.0959 -2.1965 0.1207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13942222_3095236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:02:54 Heat of formation + Delta-G solvation = -87.189971 kcal Electronic energy + Delta-G solvation = -21555.650778 eV Core-core repulsion = 18596.886596 eV Total energy + Delta-G solvation = -2958.764182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.55678 -39.04098 -37.78669 -35.60607 -32.76341 -30.40392 -29.61762 -28.37391 -28.26075 -27.97811 -27.67917 -26.59348 -23.69901 -23.04655 -20.63307 -19.17452 -18.16443 -17.58096 -16.79479 -16.53699 -16.01593 -15.52613 -15.51308 -15.11012 -14.71370 -14.43753 -14.17679 -14.11859 -13.85939 -13.82140 -13.63355 -13.57197 -13.29520 -13.20260 -13.12193 -13.04651 -12.96256 -12.63047 -12.35439 -12.25218 -11.96852 -11.90523 -11.87328 -11.61977 -11.10610 -10.98671 -10.83048 -10.76426 -10.57331 -9.85644 -8.85105 0.26422 0.40331 1.17911 1.45585 1.48402 1.60530 1.80666 1.86878 1.91353 2.49133 2.58268 2.69781 3.59117 3.70274 3.83789 3.98208 4.08559 4.16504 4.28200 4.32206 4.35263 4.46999 4.55078 4.68786 4.76703 4.78882 4.79168 4.80683 4.83204 4.83439 4.83744 4.85390 4.91311 4.99551 5.07089 5.11468 5.28095 5.33680 5.38504 5.40457 5.54634 5.62601 5.65392 5.68296 5.78215 6.42398 6.64766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.112 4.112 5 C -0.076 4.076 6 C -0.196 4.196 7 C 0.125 3.875 8 O -0.305 6.305 9 C -0.263 4.263 10 Si 1.060 2.940 11 C -0.463 4.463 12 C -0.458 4.458 13 C -0.464 4.464 14 C -0.160 4.160 15 C -0.085 4.085 16 O -0.551 6.551 17 Si 1.030 2.970 18 H -0.243 1.243 19 H -0.261 1.261 20 H -0.272 1.272 21 C -0.102 4.102 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.375 0.625 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 3.265 2.706 4.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.112 4.112 5 C -0.093 4.093 6 C -0.214 4.214 7 C 0.079 3.921 8 O -0.219 6.219 9 C -0.382 4.382 10 Si 1.252 2.748 11 C -0.570 4.570 12 C -0.566 4.566 13 C -0.570 4.570 14 C -0.161 4.161 15 C -0.193 4.193 16 O -0.358 6.358 17 Si 0.851 3.149 18 H -0.166 1.166 19 H -0.186 1.186 20 H -0.197 1.197 21 C -0.120 4.120 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.160 0.840 30 H 0.170 0.830 31 H 0.138 0.862 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.224 0.776 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.922 2.917 1.285 3.318 hybrid contribution -0.368 0.172 1.213 1.279 sum -1.290 3.089 2.497 4.176 Atomic orbital electron populations 1.21849 0.93772 1.01767 1.02601 1.20129 0.96393 0.96334 0.94666 1.21855 1.00931 0.94602 1.02614 1.19885 0.99283 0.96299 0.95765 1.21007 0.98091 0.99304 0.90947 1.21486 1.02151 0.96854 1.00933 1.18836 0.94577 0.92137 0.86541 1.85957 1.66360 1.56511 1.13041 1.28516 1.19215 1.05773 0.84687 0.78760 0.63198 0.66481 0.66390 1.26263 1.04528 1.21453 1.04749 1.26172 1.07243 1.07556 1.15616 1.26650 1.10008 1.05841 1.14487 1.19627 1.05055 1.00211 0.91228 1.25209 0.95648 0.83897 1.14546 1.86647 1.71486 1.40138 1.37516 0.84263 0.78491 0.79886 0.72211 1.16629 1.18600 1.19687 1.20977 0.97670 0.95750 0.97558 0.91918 0.91615 0.93286 0.90680 0.91941 0.93022 0.91608 0.84023 0.82967 0.86207 0.90052 0.90860 0.91226 0.91412 0.90546 0.90852 0.90622 0.92230 0.91377 0.90397 0.90146 0.77614 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.16 9.01 71.98 0.65 0.80 16 2 C -0.06 -0.01 3.09 -11.54 -0.04 -0.04 16 3 C -0.14 0.23 9.01 71.98 0.65 0.88 16 4 C -0.11 -0.29 4.78 -19.85 -0.09 -0.39 16 5 C -0.08 -0.04 8.70 22.25 0.19 0.16 16 6 C -0.20 -0.05 5.61 22.36 0.13 0.07 16 7 C 0.12 0.39 5.09 22.50 0.11 0.51 16 8 O -0.31 -0.46 8.70 -92.45 -0.80 -1.26 16 9 C -0.26 1.14 5.31 113.37 0.60 1.75 16 10 Si 1.06 -6.88 11.68 68.60 0.80 -6.08 16 11 C -0.46 1.46 8.65 113.37 0.98 2.44 16 12 C -0.46 2.81 8.65 113.37 0.98 3.79 16 13 C -0.46 1.20 7.03 113.37 0.80 2.00 16 14 C -0.16 -0.84 5.28 -19.77 -0.10 -0.95 16 15 C -0.08 -0.42 2.33 71.24 0.17 -0.25 16 16 O -0.55 -3.48 12.65 -148.98 -1.89 -5.37 16 17 Si 1.03 4.48 25.74 68.60 1.77 6.25 16 18 H -0.24 -0.74 7.11 99.48 0.71 -0.03 16 19 H -0.26 -1.45 6.74 99.48 0.67 -0.78 16 20 H -0.27 -1.76 7.11 99.48 0.71 -1.05 16 21 C -0.10 -0.50 8.28 22.26 0.18 -0.32 16 22 H 0.06 -0.14 7.38 -2.39 -0.02 -0.16 16 23 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.05 0.04 8.14 -2.38 -0.02 0.02 16 25 H 0.07 0.02 7.87 -2.38 -0.02 0.00 16 26 H 0.06 -0.16 7.38 -2.39 -0.02 -0.18 16 27 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.14 -0.48 7.09 -2.91 -0.02 -0.50 16 30 H 0.15 -0.70 4.75 -2.91 -0.01 -0.72 16 31 H 0.12 -0.80 7.96 -2.39 -0.02 -0.82 16 32 H 0.08 -0.50 6.08 -2.39 -0.01 -0.52 16 33 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 35 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 36 H 0.08 -0.53 7.96 -2.39 -0.02 -0.55 16 37 H 0.07 -0.39 7.96 -2.39 -0.02 -0.40 16 38 H 0.07 -0.49 7.96 -2.38 -0.02 -0.51 16 39 H 0.06 0.07 6.25 -2.38 -0.01 0.06 16 40 H 0.07 -0.16 7.96 -2.39 -0.02 -0.17 16 41 H 0.08 -0.30 6.54 -2.39 -0.02 -0.32 16 42 H 0.08 0.27 7.83 -2.39 -0.02 0.25 16 43 H 0.37 0.67 8.61 -74.06 -0.64 0.04 16 44 H 0.13 0.47 4.77 -2.91 -0.01 0.46 16 Total: 0.00 -9.10 341.38 6.13 -2.97 By element: Atomic # 1 Polarization: -8.00 SS G_CDS: 1.05 Total: -6.95 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 5.21 Total: 10.44 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -2.69 Total: -6.63 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.57 Total: 0.17 kcal Total: -9.10 6.13 -2.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13942222_3095236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.220 kcal (2) G-P(sol) polarization free energy of solvation -9.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds