Wall clock time and date at job start Tue Mar 9 2021 15:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38238 * 119.97530 * 85.00316 * 3 2 1 5 5 C 1.50713 * 119.94106 * 359.97438 * 4 3 2 6 6 O 1.42896 * 109.47035 * 75.00318 * 5 4 3 7 7 Si 1.86303 * 109.46930 * 195.00231 * 5 4 3 8 8 C 1.38285 * 120.11592 * 179.97438 * 4 3 2 9 9 C 1.38118 * 120.05496 * 0.02562 * 8 4 3 10 10 C 1.38755 * 119.94236 * 0.02562 * 9 8 4 11 11 O 1.35901 * 120.05604 * 180.02562 * 10 9 8 12 12 C 1.42902 * 116.99791 * 0.02562 * 11 10 9 13 13 C 1.53003 * 109.46946 * 179.97438 * 12 11 10 14 14 H 1.09002 * 112.84832 * 316.19757 * 13 12 11 15 15 C 1.53784 * 113.61391 * 87.50521 * 13 12 11 16 16 C 1.53788 * 87.08005 * 139.97975 * 15 13 12 17 17 H 1.08994 * 113.61241 * 89.11618 * 16 15 13 18 18 O 1.42897 * 113.68739 * 220.00895 * 16 15 13 19 19 C 1.42902 * 113.99802 * 247.53433 * 18 16 15 20 20 C 1.52998 * 109.46882 * 60.00258 * 19 18 16 21 21 C 1.52999 * 109.47222 * 180.02562 * 19 18 16 22 22 C 1.52997 * 109.47078 * 300.00270 * 19 18 16 23 23 C 1.53782 * 113.61268 * 185.00287 * 13 12 11 24 24 C 1.38170 * 119.97152 * 264.72626 * 3 2 1 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.08999 * 109.46755 * 315.00342 * 5 4 3 31 31 H 0.96695 * 114.00091 * 180.02562 * 6 5 4 32 32 H 1.48503 * 109.99702 * 299.99843 * 7 5 4 33 33 H 1.48501 * 110.00026 * 61.32142 * 7 5 4 34 34 H 1.07998 * 119.97347 * 180.02562 * 8 4 3 35 35 H 1.07996 * 120.03279 * 180.02562 * 9 8 4 36 36 H 1.08999 * 109.47453 * 299.99857 * 12 11 10 37 37 H 1.09004 * 109.47026 * 59.99992 * 12 11 10 38 38 H 1.08993 * 113.61557 * 254.52921 * 15 13 12 39 39 H 1.08998 * 113.61120 * 25.43002 * 15 13 12 40 40 H 1.09000 * 109.47490 * 60.00084 * 20 19 18 41 41 H 1.09001 * 109.47148 * 179.97438 * 20 19 18 42 42 H 1.08992 * 109.47664 * 299.99837 * 20 19 18 43 43 H 1.09006 * 109.47107 * 59.99760 * 21 19 18 44 44 H 1.08992 * 109.47257 * 180.02562 * 21 19 18 45 45 H 1.09008 * 109.47001 * 300.00442 * 21 19 18 46 46 H 1.09003 * 109.47515 * 59.99918 * 22 19 18 47 47 H 1.09002 * 109.47077 * 180.02562 * 22 19 18 48 48 H 1.08999 * 109.47532 * 299.99776 * 22 19 18 49 49 H 1.08997 * 113.61497 * 334.56515 * 23 13 12 50 50 H 1.09001 * 113.61579 * 105.38839 * 23 13 12 51 51 H 1.08001 * 120.02439 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1642 2.1068 1.1929 5 6 1.8047 1.4326 2.4920 6 8 2.8270 0.4975 2.8421 7 14 1.6495 2.7146 3.8348 8 6 2.6253 3.4105 1.1964 9 6 2.9549 4.0308 0.0071 10 6 2.8224 3.3448 -1.1917 11 8 3.1465 3.9528 -2.3632 12 6 3.6179 5.2996 -2.2864 13 6 3.9304 5.8116 -3.6939 14 1 4.4682 5.0823 -4.2999 15 6 2.7177 6.4331 -4.4067 16 6 3.6808 7.5072 -4.9396 17 1 4.1495 7.2419 -5.8872 18 8 3.1262 8.8241 -4.9443 19 6 2.9090 9.3587 -6.2517 20 6 1.9378 8.4571 -7.0163 21 6 2.3169 10.7647 -6.1359 22 6 4.2404 9.4267 -7.0025 23 6 4.5613 7.2139 -3.7134 24 6 2.3661 2.0350 -1.1919 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.8559 0.9082 2.3788 31 1 2.6613 0.0251 3.6694 32 1 2.9368 3.4366 3.9989 33 1 0.5679 3.6748 3.4978 34 1 2.7278 3.9441 2.1297 35 1 3.3153 5.0488 0.0102 36 1 2.8511 5.9277 -1.8329 37 1 4.5221 5.3340 -1.6786 38 1 2.2969 5.7984 -5.1864 39 1 1.9629 6.8234 -3.7241 40 1 0.9892 8.4086 -6.4814 41 1 1.7717 8.8650 -8.0134 42 1 2.3599 7.4556 -7.0988 43 1 3.0092 11.4068 -5.5912 44 1 2.1508 11.1722 -7.1330 45 1 1.3685 10.7166 -5.6008 46 1 4.6626 8.4252 -7.0850 47 1 4.0748 9.8348 -7.9995 48 1 4.9324 10.0690 -6.4578 49 1 4.3104 7.8177 -2.8413 50 1 5.6291 7.2093 -3.9321 51 1 2.2667 1.4973 -2.1232 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_14047408_14598384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:04:05 Heat of formation + Delta-G solvation = -78.309249 kcal Electronic energy + Delta-G solvation = -27334.195238 eV Core-core repulsion = 23586.964066 eV Total energy + Delta-G solvation = -3747.231172 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.202 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49063 -40.84122 -39.44144 -38.19084 -37.13591 -34.83862 -33.92874 -32.21568 -30.44215 -29.49664 -28.42659 -28.33080 -26.69741 -26.25049 -25.00700 -23.68864 -22.86943 -21.40941 -20.81205 -20.66775 -18.70026 -18.36211 -17.94321 -17.44273 -16.95945 -16.70637 -16.55682 -16.06625 -15.84904 -15.67917 -15.23699 -15.04993 -14.57504 -14.53953 -14.45788 -14.21639 -13.97915 -13.86051 -13.61056 -13.48486 -13.39953 -13.31596 -13.21603 -12.97772 -12.82693 -12.72784 -12.63697 -12.39690 -12.20106 -12.17864 -11.90598 -11.88436 -11.82796 -11.69470 -11.57177 -11.37979 -11.21156 -10.37673 -10.22091 -9.78435 -9.10262 -4.97073 0.34071 0.36085 1.31124 1.64912 1.99000 2.10420 2.64366 2.71149 3.41365 3.48753 3.51434 3.69552 3.71913 3.76622 3.78945 3.85727 3.93097 4.00428 4.04127 4.08614 4.11749 4.16518 4.20710 4.28839 4.36626 4.44829 4.47709 4.53079 4.54092 4.61693 4.62873 4.71139 4.72397 4.74571 4.75327 4.79068 4.85680 4.88398 4.95248 4.96656 5.05118 5.06840 5.11653 5.12182 5.25457 5.27108 5.28588 5.33710 5.35905 5.36712 5.65125 5.77630 6.38181 6.44301 6.66733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.013 4.013 4 C -0.113 4.113 5 C -0.064 4.064 6 O -0.544 6.544 7 Si 0.676 3.324 8 C -0.079 4.079 9 C -0.210 4.210 10 C 0.143 3.857 11 O -0.310 6.310 12 C 0.071 3.929 13 C -0.110 4.110 14 H 0.105 0.895 15 C -0.148 4.148 16 C 0.062 3.938 17 H 0.093 0.907 18 O -0.362 6.362 19 C 0.105 3.895 20 C -0.176 4.176 21 C -0.139 4.139 22 C -0.179 4.179 23 C -0.127 4.127 24 C -0.151 4.151 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.380 0.620 32 H -0.251 1.251 33 H -0.256 1.256 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.078 0.922 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 -0.737 0.666 1.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.013 4.013 4 C -0.113 4.113 5 C -0.175 4.175 6 O -0.350 6.350 7 Si 0.578 3.422 8 C -0.096 4.096 9 C -0.229 4.229 10 C 0.097 3.903 11 O -0.224 6.224 12 C -0.004 4.004 13 C -0.128 4.128 14 H 0.123 0.877 15 C -0.185 4.185 16 C 0.005 3.995 17 H 0.110 0.890 18 O -0.281 6.281 19 C 0.066 3.934 20 C -0.234 4.234 21 C -0.196 4.196 22 C -0.237 4.237 23 C -0.165 4.165 24 C -0.170 4.170 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.227 0.773 32 H -0.177 1.177 33 H -0.180 1.180 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.112 0.888 50 H 0.097 0.903 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.935 0.392 0.266 1.048 hybrid contribution 0.173 0.025 -0.666 0.689 sum -0.761 0.417 -0.400 0.956 Atomic orbital electron populations 1.21770 0.94432 1.02130 1.02209 1.20663 0.96226 0.91950 1.04031 1.19541 0.94816 0.95874 0.91102 1.19045 1.04640 0.94090 0.93508 1.24607 0.93256 0.99560 1.00051 1.86515 1.45825 1.57124 1.45534 0.95514 0.80716 0.79931 0.86082 1.20755 0.96957 0.94425 0.97476 1.21129 1.08459 1.01317 0.91995 1.18970 0.94372 0.92310 0.84645 1.86076 1.79618 1.28350 1.28351 1.22838 0.98906 0.80719 0.97931 1.22320 0.98944 0.96391 0.95147 0.87717 1.23616 0.97088 0.97171 1.00647 1.23564 0.94756 0.83021 0.98201 0.88961 1.88034 1.82702 1.30023 1.27337 1.21543 0.94279 0.94329 0.83289 1.22468 1.00190 0.99868 1.00858 1.21771 1.01485 0.93846 1.02518 1.22472 0.97554 1.02486 1.01141 1.23231 0.99611 0.94441 0.99174 1.20352 1.05070 0.92807 0.98742 0.92533 0.92469 0.91893 0.89292 0.90752 0.90857 0.77298 1.17655 1.18022 0.86054 0.85221 0.91612 0.91652 0.90890 0.89129 0.91678 0.91504 0.92274 0.91759 0.91034 0.91773 0.92223 0.91323 0.91601 0.88840 0.90348 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.01 9.78 37.16 0.36 0.38 16 2 C -0.09 -0.09 5.43 -27.88 -0.15 -0.24 16 3 C -0.01 -0.04 5.13 -104.65 -0.54 -0.58 16 4 C -0.11 -0.37 5.29 -104.60 -0.55 -0.93 16 5 C -0.06 -0.04 1.91 36.01 0.07 0.03 16 6 O -0.54 -0.29 11.88 -35.23 -0.42 -0.71 16 7 Si 0.68 -0.19 30.19 -169.99 -5.13 -5.32 16 8 C -0.08 -0.29 8.65 -39.61 -0.34 -0.63 16 9 C -0.21 -0.69 9.04 -39.43 -0.36 -1.05 16 10 C 0.14 0.53 6.69 -39.22 -0.26 0.27 16 11 O -0.31 -1.01 10.14 -19.43 -0.20 -1.21 16 12 C 0.07 0.06 4.58 37.16 0.17 0.23 16 13 C -0.11 0.01 4.01 -89.80 -0.36 -0.35 16 14 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 15 C -0.15 -0.06 7.47 -25.91 -0.19 -0.25 16 16 C 0.06 0.02 2.82 -25.91 -0.07 -0.05 16 17 H 0.09 -0.05 5.54 -51.93 -0.29 -0.34 16 18 O -0.36 -0.74 10.00 -35.23 -0.35 -1.09 16 19 C 0.10 0.05 1.11 -90.62 -0.10 -0.05 16 20 C -0.18 0.03 8.38 37.16 0.31 0.34 16 21 C -0.14 0.00 8.84 37.16 0.33 0.33 16 22 C -0.18 0.08 8.38 37.16 0.31 0.39 16 23 C -0.13 0.05 7.47 -25.92 -0.19 -0.15 16 24 C -0.15 -0.51 9.62 -39.43 -0.38 -0.89 16 25 H 0.06 -0.01 6.66 -51.93 -0.35 -0.36 16 26 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 27 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.09 0.09 6.43 -51.93 -0.33 -0.24 16 29 H 0.07 0.03 8.05 -51.93 -0.42 -0.38 16 30 H 0.07 -0.06 5.90 -51.93 -0.31 -0.37 16 31 H 0.38 -1.70 8.74 45.56 0.40 -1.30 16 32 H -0.25 -0.67 6.74 56.52 0.38 -0.29 16 33 H -0.26 -0.62 7.11 56.52 0.40 -0.22 16 34 H 0.12 0.37 4.89 -52.49 -0.26 0.11 16 35 H 0.13 0.18 6.30 -52.49 -0.33 -0.15 16 36 H 0.07 0.03 7.36 -51.93 -0.38 -0.35 16 37 H 0.07 0.01 7.66 -51.93 -0.40 -0.39 16 38 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 39 H 0.09 0.11 7.90 -51.93 -0.41 -0.30 16 40 H 0.06 0.03 8.14 -51.93 -0.42 -0.40 16 41 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 42 H 0.06 -0.02 7.02 -51.93 -0.36 -0.38 16 43 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 44 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 45 H 0.06 0.02 8.14 -51.92 -0.42 -0.40 16 46 H 0.06 -0.05 6.24 -51.93 -0.32 -0.37 16 47 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 48 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 49 H 0.09 0.00 8.10 -51.93 -0.42 -0.43 16 50 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 51 H 0.13 0.29 8.06 -52.49 -0.42 -0.14 16 LS Contribution 393.22 15.07 5.93 5.93 Total: 0.00 -5.86 393.22 -11.02 -16.88 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: -8.89 Total: -11.27 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.95 Total: -3.21 kcal Atomic # 8 Polarization: -2.04 SS G_CDS: -0.97 Total: -3.01 kcal Atomic # 14 Polarization: -0.19 SS G_CDS: -5.13 Total: -5.32 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -5.86 -11.02 -16.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_14598384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.433 kcal (2) G-P(sol) polarization free energy of solvation -5.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds