Wall clock time and date at job start Tue Mar 9 2021 15:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38238 * 119.97530 * 85.00316 * 3 2 1 5 5 C 1.50713 * 119.94106 * 359.97438 * 4 3 2 6 6 O 1.42896 * 109.47035 * 75.00318 * 5 4 3 7 7 Si 1.86303 * 109.46930 * 195.00231 * 5 4 3 8 8 C 1.38285 * 120.11592 * 179.97438 * 4 3 2 9 9 C 1.38118 * 120.05496 * 0.02562 * 8 4 3 10 10 C 1.38755 * 119.94236 * 0.02562 * 9 8 4 11 11 O 1.35901 * 120.05604 * 180.02562 * 10 9 8 12 12 C 1.42902 * 116.99791 * 0.02562 * 11 10 9 13 13 C 1.53003 * 109.46946 * 179.97438 * 12 11 10 14 14 H 1.09002 * 112.84832 * 316.19757 * 13 12 11 15 15 C 1.53784 * 113.61391 * 87.50521 * 13 12 11 16 16 C 1.53788 * 87.08005 * 139.97975 * 15 13 12 17 17 H 1.08994 * 113.61241 * 89.11618 * 16 15 13 18 18 O 1.42897 * 113.68739 * 220.00895 * 16 15 13 19 19 C 1.42902 * 113.99802 * 247.53433 * 18 16 15 20 20 C 1.52998 * 109.46882 * 60.00258 * 19 18 16 21 21 C 1.52999 * 109.47222 * 180.02562 * 19 18 16 22 22 C 1.52997 * 109.47078 * 300.00270 * 19 18 16 23 23 C 1.53782 * 113.61268 * 185.00287 * 13 12 11 24 24 C 1.38170 * 119.97152 * 264.72626 * 3 2 1 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.08999 * 109.46755 * 315.00342 * 5 4 3 31 31 H 0.96695 * 114.00091 * 180.02562 * 6 5 4 32 32 H 1.48503 * 109.99702 * 299.99843 * 7 5 4 33 33 H 1.48501 * 110.00026 * 61.32142 * 7 5 4 34 34 H 1.07998 * 119.97347 * 180.02562 * 8 4 3 35 35 H 1.07996 * 120.03279 * 180.02562 * 9 8 4 36 36 H 1.08999 * 109.47453 * 299.99857 * 12 11 10 37 37 H 1.09004 * 109.47026 * 59.99992 * 12 11 10 38 38 H 1.08993 * 113.61557 * 254.52921 * 15 13 12 39 39 H 1.08998 * 113.61120 * 25.43002 * 15 13 12 40 40 H 1.09000 * 109.47490 * 60.00084 * 20 19 18 41 41 H 1.09001 * 109.47148 * 179.97438 * 20 19 18 42 42 H 1.08992 * 109.47664 * 299.99837 * 20 19 18 43 43 H 1.09006 * 109.47107 * 59.99760 * 21 19 18 44 44 H 1.08992 * 109.47257 * 180.02562 * 21 19 18 45 45 H 1.09008 * 109.47001 * 300.00442 * 21 19 18 46 46 H 1.09003 * 109.47515 * 59.99918 * 22 19 18 47 47 H 1.09002 * 109.47077 * 180.02562 * 22 19 18 48 48 H 1.08999 * 109.47532 * 299.99776 * 22 19 18 49 49 H 1.08997 * 113.61497 * 334.56515 * 23 13 12 50 50 H 1.09001 * 113.61579 * 105.38839 * 23 13 12 51 51 H 1.08001 * 120.02439 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1642 2.1068 1.1929 5 6 1.8047 1.4326 2.4920 6 8 2.8270 0.4975 2.8421 7 14 1.6495 2.7146 3.8348 8 6 2.6253 3.4105 1.1964 9 6 2.9549 4.0308 0.0071 10 6 2.8224 3.3448 -1.1917 11 8 3.1465 3.9528 -2.3632 12 6 3.6179 5.2996 -2.2864 13 6 3.9304 5.8116 -3.6939 14 1 4.4682 5.0823 -4.2999 15 6 2.7177 6.4331 -4.4067 16 6 3.6808 7.5072 -4.9396 17 1 4.1495 7.2419 -5.8872 18 8 3.1262 8.8241 -4.9443 19 6 2.9090 9.3587 -6.2517 20 6 1.9378 8.4571 -7.0163 21 6 2.3169 10.7647 -6.1359 22 6 4.2404 9.4267 -7.0025 23 6 4.5613 7.2139 -3.7134 24 6 2.3661 2.0350 -1.1919 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.8559 0.9082 2.3788 31 1 2.6613 0.0251 3.6694 32 1 2.9368 3.4366 3.9989 33 1 0.5679 3.6748 3.4978 34 1 2.7278 3.9441 2.1297 35 1 3.3153 5.0488 0.0102 36 1 2.8511 5.9277 -1.8329 37 1 4.5221 5.3340 -1.6786 38 1 2.2969 5.7984 -5.1864 39 1 1.9629 6.8234 -3.7241 40 1 0.9892 8.4086 -6.4814 41 1 1.7717 8.8650 -8.0134 42 1 2.3599 7.4556 -7.0988 43 1 3.0092 11.4068 -5.5912 44 1 2.1508 11.1722 -7.1330 45 1 1.3685 10.7166 -5.6008 46 1 4.6626 8.4252 -7.0850 47 1 4.0748 9.8348 -7.9995 48 1 4.9324 10.0690 -6.4578 49 1 4.3104 7.8177 -2.8413 50 1 5.6291 7.2093 -3.9321 51 1 2.2667 1.4973 -2.1232 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14047408_14598384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:04:05 Heat of formation + Delta-G solvation = -71.290623 kcal Electronic energy + Delta-G solvation = -27333.890887 eV Core-core repulsion = 23586.964066 eV Total energy + Delta-G solvation = -3746.926822 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.202 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64211 -40.90267 -39.55875 -38.22890 -37.18054 -34.94666 -33.96941 -32.37312 -30.56358 -29.56843 -28.39278 -28.33018 -26.71763 -26.34578 -25.12076 -23.73461 -23.02352 -21.53831 -20.84383 -20.69539 -18.86702 -18.36098 -18.02141 -17.52645 -17.07855 -16.84186 -16.59903 -16.14755 -15.94352 -15.75262 -15.31816 -15.12108 -14.60916 -14.58199 -14.49269 -14.29320 -14.07563 -14.02152 -13.69970 -13.51120 -13.42968 -13.33892 -13.23180 -12.97466 -12.82135 -12.75344 -12.67464 -12.45635 -12.30882 -12.24327 -11.98751 -11.91920 -11.90132 -11.72941 -11.68868 -11.40402 -11.23617 -10.41577 -10.22935 -9.99583 -9.31312 -4.98752 0.11037 0.14748 1.29145 1.60596 1.94545 1.97234 2.44695 2.69862 3.38442 3.41175 3.49099 3.57578 3.62568 3.70763 3.74526 3.87003 3.93324 3.94622 4.00859 4.05077 4.06676 4.09149 4.15588 4.19533 4.30545 4.38329 4.45529 4.47590 4.52253 4.58580 4.63427 4.66899 4.70897 4.71624 4.74689 4.80411 4.86191 4.87554 4.89933 4.95177 4.97528 5.05014 5.07368 5.11661 5.12486 5.18457 5.25881 5.29295 5.32563 5.34370 5.48971 5.61283 6.25194 6.36971 6.94053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.020 4.020 4 C -0.129 4.129 5 C -0.069 4.069 6 O -0.559 6.559 7 Si 0.767 3.233 8 C -0.098 4.098 9 C -0.218 4.218 10 C 0.130 3.870 11 O -0.321 6.321 12 C 0.068 3.932 13 C -0.103 4.103 14 H 0.109 0.891 15 C -0.148 4.148 16 C 0.062 3.938 17 H 0.102 0.898 18 O -0.382 6.382 19 C 0.098 3.902 20 C -0.174 4.174 21 C -0.140 4.140 22 C -0.177 4.177 23 C -0.123 4.123 24 C -0.163 4.163 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.402 0.598 32 H -0.294 1.294 33 H -0.294 1.294 34 H 0.122 0.878 35 H 0.142 0.858 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 -1.526 0.550 2.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.020 4.020 4 C -0.129 4.129 5 C -0.179 4.179 6 O -0.369 6.369 7 Si 0.674 3.326 8 C -0.115 4.115 9 C -0.237 4.237 10 C 0.085 3.915 11 O -0.235 6.235 12 C -0.007 4.007 13 C -0.121 4.121 14 H 0.127 0.873 15 C -0.186 4.186 16 C 0.004 3.996 17 H 0.120 0.880 18 O -0.302 6.302 19 C 0.059 3.941 20 C -0.231 4.231 21 C -0.197 4.197 22 C -0.234 4.234 23 C -0.160 4.160 24 C -0.181 4.181 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.253 0.747 32 H -0.223 1.223 33 H -0.221 1.221 34 H 0.139 0.861 35 H 0.159 0.841 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.107 0.893 50 H 0.108 0.892 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.938 -0.431 0.164 1.045 hybrid contribution 0.184 0.312 -0.633 0.729 sum -0.755 -0.118 -0.469 0.896 Atomic orbital electron populations 1.21762 0.93551 1.02947 1.02044 1.20690 0.96904 0.90651 1.04345 1.19831 0.94502 0.96852 0.90851 1.19448 1.04295 0.94159 0.94982 1.24703 0.93997 1.00190 0.99041 1.86462 1.45949 1.57244 1.47275 0.94621 0.76342 0.77568 0.84090 1.20944 0.97779 0.95104 0.97689 1.21307 1.08469 1.01972 0.91905 1.19123 0.94818 0.92685 0.84902 1.86057 1.79778 1.29330 1.28333 1.22969 0.99174 0.79833 0.98701 1.22283 0.98718 0.96573 0.94571 0.87298 1.23586 0.97081 0.97390 1.00526 1.23645 0.94718 0.82389 0.98851 0.88017 1.88010 1.82970 1.30743 1.28435 1.21690 0.94971 0.94494 0.82954 1.22444 0.99585 0.99938 1.01164 1.21797 1.00937 0.93754 1.03181 1.22449 0.96856 1.02701 1.01396 1.23207 1.00162 0.93899 0.98751 1.20590 1.05186 0.92963 0.99400 0.92293 0.93069 0.90547 0.89051 0.90319 0.88986 0.74729 1.22268 1.22137 0.86103 0.84053 0.91550 0.90946 0.90865 0.90238 0.92558 0.90474 0.92118 0.92229 0.89659 0.92496 0.91822 0.90345 0.92113 0.89285 0.89223 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.13 9.78 71.98 0.70 0.83 16 2 C -0.09 -0.14 5.43 29.85 0.16 0.02 16 3 C -0.02 -0.13 5.13 -19.88 -0.10 -0.23 16 4 C -0.13 -0.92 5.29 -19.85 -0.11 -1.03 16 5 C -0.07 -0.07 1.91 71.24 0.14 0.07 16 6 O -0.56 -0.14 11.88 -148.98 -1.77 -1.91 16 7 Si 0.77 -0.23 30.19 68.60 2.07 1.84 16 8 C -0.10 -0.85 8.65 22.25 0.19 -0.65 16 9 C -0.22 -1.73 9.04 22.36 0.20 -1.52 16 10 C 0.13 1.13 6.69 22.51 0.15 1.28 16 11 O -0.32 -2.41 10.14 -92.43 -0.94 -3.35 16 12 C 0.07 0.17 4.58 71.98 0.33 0.50 16 13 C -0.10 -0.03 4.01 -10.27 -0.04 -0.07 16 14 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 15 C -0.15 -0.23 7.47 31.12 0.23 0.00 16 16 C 0.06 0.06 2.82 31.12 0.09 0.14 16 17 H 0.10 -0.13 5.54 -2.39 -0.01 -0.14 16 18 O -0.38 -1.79 10.00 -148.98 -1.49 -3.28 16 19 C 0.10 0.11 1.11 -10.80 -0.01 0.10 16 20 C -0.17 0.05 8.38 71.98 0.60 0.66 16 21 C -0.14 -0.05 8.84 71.98 0.64 0.59 16 22 C -0.18 0.22 8.38 71.98 0.60 0.82 16 23 C -0.12 0.07 7.47 31.12 0.23 0.30 16 24 C -0.16 -1.25 9.62 22.37 0.22 -1.04 16 25 H 0.06 -0.08 6.66 -2.39 -0.02 -0.09 16 26 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.09 0.11 6.43 -2.39 -0.02 0.10 16 29 H 0.08 0.04 8.05 -2.39 -0.02 0.03 16 30 H 0.09 -0.27 5.90 -2.39 -0.01 -0.29 16 31 H 0.40 -4.19 8.74 -74.06 -0.65 -4.84 16 32 H -0.29 -1.97 6.74 99.48 0.67 -1.30 16 33 H -0.29 -1.74 7.11 99.48 0.71 -1.03 16 34 H 0.12 0.94 4.89 -2.91 -0.01 0.92 16 35 H 0.14 0.59 6.30 -2.91 -0.02 0.57 16 36 H 0.07 0.14 7.36 -2.39 -0.02 0.12 16 37 H 0.07 0.06 7.66 -2.38 -0.02 0.05 16 38 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.08 0.30 7.90 -2.39 -0.02 0.28 16 40 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.06 -0.04 7.02 -2.39 -0.02 -0.06 16 43 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 44 H 0.08 -0.24 8.14 -2.39 -0.02 -0.25 16 45 H 0.06 0.09 8.14 -2.38 -0.02 0.07 16 46 H 0.06 -0.13 6.24 -2.39 -0.01 -0.15 16 47 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 48 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 49 H 0.09 0.04 8.10 -2.39 -0.02 0.02 16 50 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 51 H 0.14 0.72 8.06 -2.91 -0.02 0.70 16 Total: 0.00 -14.49 393.22 2.36 -12.13 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: 0.26 Total: -6.21 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 4.23 Total: 0.77 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -4.20 Total: -8.54 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: 2.07 Total: 1.84 kcal Total: -14.49 2.36 -12.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_14598384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.157 kcal (2) G-P(sol) polarization free energy of solvation -14.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds