Wall clock time and date at job start Tue Mar 9 2021 15:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47335 * 2 1 4 4 C 1.38242 * 119.97362 * 84.99621 * 3 2 1 5 5 C 1.50699 * 119.94336 * 0.02562 * 4 3 2 6 6 O 1.42895 * 109.47158 * 284.99524 * 5 4 3 7 7 Si 1.86300 * 109.46944 * 165.00045 * 5 4 3 8 8 C 1.38289 * 120.11288 * 180.27609 * 4 3 2 9 9 C 1.38126 * 120.05430 * 359.45129 * 8 4 3 10 10 C 1.38756 * 119.94163 * 0.52772 * 9 8 4 11 11 O 1.35904 * 120.05409 * 179.72274 * 10 9 8 12 12 C 1.42900 * 117.00055 * 0.02562 * 11 10 9 13 13 C 1.53001 * 109.47033 * 179.97438 * 12 11 10 14 14 H 1.08998 * 112.85377 * 316.19922 * 13 12 11 15 15 C 1.53778 * 113.61036 * 87.50411 * 13 12 11 16 16 C 1.53788 * 87.08145 * 139.98055 * 15 13 12 17 17 H 1.09000 * 113.61260 * 89.11457 * 16 15 13 18 18 N 1.46494 * 113.68985 * 220.00682 * 16 15 13 19 19 C 1.34773 * 120.00019 * 252.53351 * 18 16 15 20 20 O 1.21511 * 120.00117 * 0.02562 * 19 18 16 21 21 O 1.34648 * 120.00148 * 180.02562 * 19 18 16 22 22 C 1.45194 * 117.00039 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.47328 * 59.99871 * 22 21 19 24 24 C 1.53001 * 109.46957 * 180.02562 * 22 21 19 25 25 C 1.52998 * 109.47170 * 299.99921 * 22 21 19 26 26 C 1.53781 * 87.07959 * 334.56802 * 16 15 13 27 27 C 1.38171 * 119.97018 * 264.98018 * 3 2 1 28 28 H 1.09007 * 109.47138 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47138 * 300.00171 * 1 2 3 30 30 H 1.09000 * 109.47006 * 60.00245 * 1 2 3 31 31 H 1.08997 * 109.46979 * 239.99333 * 2 1 3 32 32 H 1.09000 * 109.47006 * 119.99755 * 2 1 3 33 33 H 1.09000 * 109.47247 * 44.99977 * 5 4 3 34 34 H 0.96698 * 114.00355 * 300.00487 * 6 5 4 35 35 H 1.48506 * 110.00048 * 180.02562 * 7 5 4 36 36 H 1.48502 * 109.99996 * 301.31619 * 7 5 4 37 37 H 1.07997 * 119.97277 * 179.70389 * 8 4 3 38 38 H 1.07997 * 120.03173 * 180.25006 * 9 8 4 39 39 H 1.08995 * 109.46940 * 299.99816 * 12 11 10 40 40 H 1.09007 * 109.47016 * 60.00104 * 12 11 10 41 41 H 1.09000 * 113.61872 * 254.52788 * 15 13 12 42 42 H 1.09001 * 113.61533 * 25.43160 * 15 13 12 43 43 H 0.97005 * 120.00168 * 72.53411 * 18 16 15 44 44 H 1.08995 * 109.46762 * 59.99796 * 23 22 21 45 45 H 1.09001 * 109.46951 * 180.02562 * 23 22 21 46 46 H 1.09005 * 109.47095 * 299.99776 * 23 22 21 47 47 H 1.08997 * 109.47713 * 59.99772 * 24 22 21 48 48 H 1.09004 * 109.46911 * 180.02562 * 24 22 21 49 49 H 1.09000 * 109.47007 * 299.99345 * 24 22 21 50 50 H 1.09001 * 109.47353 * 59.99670 * 25 22 21 51 51 H 1.09001 * 109.47558 * 180.02562 * 25 22 21 52 52 H 1.09008 * 109.47005 * 300.00319 * 25 22 21 53 53 H 1.09002 * 113.61407 * 270.88519 * 26 16 15 54 54 H 1.08995 * 113.69169 * 139.99310 * 26 16 15 55 55 H 1.07997 * 120.02767 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.1641 2.1067 1.1930 5 6 1.8056 1.4323 2.4920 6 8 0.3838 1.3613 2.6154 7 14 2.5040 2.4125 3.9140 8 6 2.6194 3.4125 1.1958 9 6 2.9545 4.0308 0.0070 10 6 2.8236 3.3443 -1.1917 11 8 3.1472 3.9525 -2.3632 12 6 3.6166 5.3000 -2.2866 13 6 3.9289 5.8120 -3.6942 14 1 4.4680 5.0834 -4.2997 15 6 2.7156 6.4315 -4.4075 16 6 3.6772 7.5068 -4.9404 17 1 4.1467 7.2419 -5.8878 18 7 3.1067 8.8561 -4.9459 19 6 2.7584 9.4358 -6.1117 20 8 2.9172 8.8391 -7.1582 21 8 2.2345 10.6761 -6.1167 22 6 1.8821 11.2376 -7.4085 23 6 0.8371 10.3471 -8.0837 24 6 1.3074 12.6422 -7.2145 25 6 3.1312 11.3153 -8.2887 26 6 4.5578 7.2152 -3.7139 27 6 2.3612 2.0366 -1.1924 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.2223 0.4251 2.5056 34 1 -0.0550 2.2230 2.6107 35 1 2.1579 1.7574 5.2011 36 1 3.9791 2.5207 3.7804 37 1 2.7170 3.9478 2.1287 38 1 3.3139 5.0493 0.0101 39 1 2.8487 5.9270 -1.8336 40 1 4.5206 5.3359 -1.6784 41 1 2.2960 5.7959 -5.1873 42 1 1.9599 6.8209 -3.7253 43 1 2.9796 9.3323 -4.1104 44 1 -0.0527 10.2918 -7.4567 45 1 0.5729 10.7684 -9.0537 46 1 1.2470 9.3466 -8.2221 47 1 2.0521 13.2764 -6.7336 48 1 1.0424 13.0635 -8.1842 49 1 0.4176 12.5872 -6.5873 50 1 3.5411 10.3149 -8.4269 51 1 2.8668 11.7372 -9.2583 52 1 3.8757 11.9497 -7.8076 53 1 4.3057 7.8189 -2.8420 54 1 5.6256 7.2121 -3.9321 55 1 2.2579 1.5003 -2.1241 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14047408_15734236.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:05:12 Heat of formation + Delta-G solvation = -105.996871 kcal Electronic energy + Delta-G solvation = -32655.987640 eV Core-core repulsion = 28239.683980 eV Total energy + Delta-G solvation = -4416.303660 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.213 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.92895 -41.43870 -40.42094 -39.22466 -37.91392 -37.09374 -35.42336 -34.80238 -34.23558 -32.08563 -30.46488 -29.32240 -28.38617 -28.31324 -26.75724 -26.24310 -25.26641 -24.47095 -23.06291 -22.53275 -21.42228 -21.32519 -20.54236 -19.16554 -18.66449 -18.33306 -17.79413 -17.27981 -17.20735 -16.98923 -16.68162 -16.43113 -16.14267 -15.87758 -15.64159 -15.50881 -15.37128 -14.80455 -14.58637 -14.48675 -14.40417 -14.22262 -14.15859 -13.74897 -13.58857 -13.45795 -13.37721 -13.27142 -13.16626 -12.94120 -12.88194 -12.86895 -12.59915 -12.51823 -12.43876 -12.23363 -12.21077 -12.08116 -11.88767 -11.73609 -11.61833 -11.49648 -11.40961 -11.25401 -11.11922 -10.27694 -10.16364 -9.81182 -9.13415 -4.99638 0.31408 0.34027 1.15931 1.35364 1.66739 1.72000 1.99454 2.17056 2.65846 3.14625 3.39877 3.50424 3.56161 3.72705 3.72898 3.74931 3.76456 3.79300 3.87334 3.90962 3.93058 4.10294 4.21989 4.25198 4.31804 4.35854 4.47008 4.50063 4.51548 4.54671 4.59475 4.63062 4.64621 4.70456 4.74837 4.77728 4.79480 4.82872 4.85972 4.86350 4.95736 4.99689 5.03468 5.06451 5.08069 5.12781 5.18666 5.25312 5.27604 5.31072 5.33596 5.48897 5.50803 5.59073 5.64307 5.78331 6.39587 6.45774 6.82976 7.33345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.025 4.025 4 C -0.165 4.165 5 C -0.064 4.064 6 O -0.547 6.547 7 Si 0.772 3.228 8 C -0.070 4.070 9 C -0.211 4.211 10 C 0.129 3.871 11 O -0.330 6.330 12 C 0.067 3.933 13 C -0.103 4.103 14 H 0.100 0.900 15 C -0.146 4.146 16 C 0.134 3.866 17 H 0.102 0.898 18 N -0.688 5.688 19 C 0.642 3.358 20 O -0.596 6.596 21 O -0.369 6.369 22 C 0.127 3.873 23 C -0.180 4.180 24 C -0.137 4.137 25 C -0.180 4.180 26 C -0.117 4.117 27 C -0.171 4.171 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.393 0.607 35 H -0.301 1.301 36 H -0.291 1.291 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.419 0.581 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.098 0.902 49 H 0.069 0.931 50 H 0.062 0.938 51 H 0.086 0.914 52 H 0.063 0.937 53 H 0.115 0.885 54 H 0.092 0.908 55 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 6.145 3.202 6.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 C -0.025 4.025 4 C -0.166 4.166 5 C -0.174 4.174 6 O -0.355 6.355 7 Si 0.679 3.321 8 C -0.087 4.087 9 C -0.229 4.229 10 C 0.083 3.917 11 O -0.244 6.244 12 C -0.008 4.008 13 C -0.122 4.122 14 H 0.118 0.882 15 C -0.185 4.185 16 C 0.030 3.970 17 H 0.120 0.880 18 N -0.347 5.347 19 C 0.396 3.604 20 O -0.487 6.487 21 O -0.284 6.284 22 C 0.091 3.909 23 C -0.237 4.237 24 C -0.194 4.194 25 C -0.237 4.237 26 C -0.155 4.155 27 C -0.190 4.190 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.242 0.758 35 H -0.229 1.229 36 H -0.218 1.218 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.256 0.744 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.105 0.895 52 H 0.082 0.918 53 H 0.133 0.867 54 H 0.111 0.889 55 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.583 5.245 3.124 6.133 hybrid contribution 0.139 -0.605 -0.417 0.748 sum 0.722 4.641 2.707 5.421 Atomic orbital electron populations 1.21869 0.93740 1.02064 1.03093 1.20572 0.97225 0.91819 1.02621 1.19650 0.94997 0.96248 0.91643 1.20178 1.05454 0.95566 0.95359 1.25024 0.86597 1.04960 1.00840 1.86455 1.17032 1.36155 1.95860 0.93994 0.78084 0.86498 0.73565 1.21030 0.95927 0.93375 0.98356 1.21450 1.07796 1.02287 0.91395 1.19139 0.94741 0.92369 0.85406 1.86070 1.79926 1.29623 1.28807 1.23023 0.99957 0.79839 0.97960 1.22270 0.98029 0.96728 0.95127 0.88204 1.23609 0.97421 0.97101 1.00339 1.22548 0.95368 0.78783 1.00301 0.88017 1.44745 1.65605 1.17660 1.06717 1.18463 0.76674 0.80361 0.84939 1.90906 1.60208 1.65681 1.31948 1.86312 1.75283 1.29355 1.37402 1.22343 0.95205 0.94307 0.79061 1.22472 0.98286 1.01100 1.01882 1.21889 1.01648 0.91562 1.04342 1.22475 0.97202 1.03399 1.00651 1.23338 1.00411 0.94175 0.97543 1.20438 1.06083 0.93696 0.98778 0.92593 0.89982 0.93503 0.91213 0.90884 0.88079 0.75753 1.22939 1.21815 0.82671 0.82728 0.90102 0.90161 0.92125 0.88524 0.74379 0.91949 0.89510 0.91918 0.91074 0.88382 0.91158 0.91867 0.89526 0.91839 0.86670 0.88904 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.33 9.85 71.98 0.71 0.38 16 2 C -0.09 -0.20 5.55 29.85 0.17 -0.04 16 3 C -0.03 -0.08 5.13 -19.88 -0.10 -0.18 16 4 C -0.16 -0.08 5.26 -19.85 -0.10 -0.18 16 5 C -0.06 0.05 2.07 71.24 0.15 0.20 16 6 O -0.55 0.65 10.17 -148.98 -1.52 -0.87 16 7 Si 0.77 -1.99 29.91 68.60 2.05 0.06 16 8 C -0.07 0.18 8.65 22.26 0.19 0.37 16 9 C -0.21 0.36 9.04 22.37 0.20 0.56 16 10 C 0.13 0.36 6.69 22.51 0.15 0.51 16 11 O -0.33 -0.82 10.14 -92.47 -0.94 -1.76 16 12 C 0.07 -0.33 4.58 71.98 0.33 0.00 16 13 C -0.10 0.52 4.01 -10.27 -0.04 0.48 16 14 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 15 C -0.15 0.37 7.43 31.12 0.23 0.60 16 16 C 0.13 -0.30 4.24 45.52 0.19 -0.11 16 17 H 0.10 0.22 7.46 -2.39 -0.02 0.20 16 18 N -0.69 0.64 5.36 -567.60 -3.04 -2.40 16 19 C 0.64 4.01 8.06 129.79 1.05 5.06 16 20 O -0.60 -7.27 11.48 19.81 0.23 -7.04 16 21 O -0.37 -1.83 9.94 -55.57 -0.55 -2.39 16 22 C 0.13 0.35 1.13 -10.79 -0.01 0.34 16 23 C -0.18 -0.62 8.37 71.98 0.60 -0.02 16 24 C -0.14 0.33 8.85 71.98 0.64 0.97 16 25 C -0.18 -0.57 8.37 71.98 0.60 0.04 16 26 C -0.12 0.96 7.39 31.12 0.23 1.19 16 27 C -0.17 -0.76 9.62 22.37 0.22 -0.55 16 28 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 29 H 0.08 0.21 5.32 -2.39 -0.01 0.20 16 30 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.07 0.13 8.05 -2.39 -0.02 0.11 16 32 H 0.07 0.17 6.43 -2.39 -0.02 0.15 16 33 H 0.10 0.12 6.53 -2.39 -0.02 0.10 16 34 H 0.39 -3.45 8.70 -74.06 -0.64 -4.10 16 35 H -0.30 -1.56 7.11 99.48 0.71 -0.86 16 36 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 37 H 0.16 -1.32 5.13 -2.91 -0.01 -1.34 16 38 H 0.16 -1.12 6.30 -2.91 -0.02 -1.14 16 39 H 0.08 -0.63 7.36 -2.39 -0.02 -0.65 16 40 H 0.08 -0.60 7.66 -2.38 -0.02 -0.62 16 41 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.10 -0.39 7.90 -2.39 -0.02 -0.41 16 43 H 0.42 -2.64 8.84 -92.70 -0.82 -3.46 16 44 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.06 0.57 5.88 -2.38 -0.01 0.55 16 47 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 48 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 49 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 50 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 51 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 52 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 53 H 0.12 -1.43 8.08 -2.39 -0.02 -1.44 16 54 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 55 H 0.12 0.56 8.06 -2.91 -0.02 0.54 16 Total: 0.00 -19.36 426.79 1.10 -18.26 By element: Atomic # 1 Polarization: -12.96 SS G_CDS: -0.52 Total: -13.48 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 5.40 Total: 9.61 kcal Atomic # 7 Polarization: 0.64 SS G_CDS: -3.04 Total: -2.40 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -2.78 Total: -12.05 kcal Atomic # 14 Polarization: -1.99 SS G_CDS: 2.05 Total: 0.06 kcal Total: -19.36 1.10 -18.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_15734236.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.741 kcal (2) G-P(sol) polarization free energy of solvation -19.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds