Wall clock time and date at job start Tue Mar 9 2021 15:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47306 * 2 1 4 4 C 1.38236 * 119.97246 * 84.99620 * 3 2 1 5 5 C 1.50699 * 119.94796 * 0.02562 * 4 3 2 6 6 O 1.42910 * 109.47290 * 74.97197 * 5 4 3 7 7 Si 1.86300 * 109.47532 * 194.97501 * 5 4 3 8 8 C 1.38290 * 120.11070 * 179.97438 * 4 3 2 9 9 C 1.38121 * 120.05384 * 0.02562 * 8 4 3 10 10 C 1.38751 * 119.94492 * 0.02562 * 9 8 4 11 11 O 1.35902 * 120.05322 * 180.02562 * 10 9 8 12 12 C 1.42900 * 117.00143 * 0.02562 * 11 10 9 13 13 C 1.52998 * 109.46923 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.47655 * 54.99345 * 13 12 11 15 15 C 1.52998 * 109.47106 * 174.99961 * 13 12 11 16 16 C 1.52998 * 109.47429 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46788 * 299.99799 * 16 15 13 18 18 H 1.09008 * 109.47201 * 299.99563 * 17 16 15 19 19 O 1.42903 * 109.47256 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.47329 * 59.99953 * 17 16 15 21 21 C 1.52998 * 109.46901 * 299.99578 * 20 17 16 22 22 C 1.38172 * 119.96589 * 265.29475 * 3 2 1 23 23 H 1.09001 * 109.46714 * 59.99893 * 1 2 3 24 24 H 1.08992 * 109.46980 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47023 * 300.00201 * 1 2 3 26 26 H 1.08997 * 109.47150 * 239.99290 * 2 1 3 27 27 H 1.09001 * 109.46714 * 120.00107 * 2 1 3 28 28 H 1.08999 * 109.47048 * 314.97760 * 5 4 3 29 29 H 0.96698 * 113.99839 * 180.02562 * 6 5 4 30 30 H 1.48497 * 109.99848 * 300.00165 * 7 5 4 31 31 H 1.48498 * 109.99487 * 61.31771 * 7 5 4 32 32 H 1.07996 * 119.97180 * 180.02562 * 8 4 3 33 33 H 1.07996 * 120.02430 * 180.02562 * 9 8 4 34 34 H 1.08993 * 109.47628 * 59.99737 * 12 11 10 35 35 H 1.09006 * 109.46786 * 299.99875 * 12 11 10 36 36 H 1.08997 * 109.47366 * 59.99207 * 15 13 12 37 37 H 1.09009 * 109.46785 * 299.99476 * 15 13 12 38 38 H 1.08997 * 109.47384 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.47329 * 59.99386 * 16 15 13 40 40 H 0.96700 * 114.00311 * 180.02562 * 19 17 16 41 41 H 1.08997 * 109.47215 * 60.00152 * 20 17 16 42 42 H 1.08999 * 109.47164 * 180.02562 * 20 17 16 43 43 H 1.08997 * 109.47655 * 300.00305 * 21 20 17 44 44 H 1.09005 * 109.46908 * 179.97438 * 21 20 17 45 45 H 1.07997 * 120.02961 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1642 2.1067 1.1929 5 6 1.8057 1.4324 2.4921 6 8 2.8284 0.4973 2.8415 7 14 1.6508 2.7141 3.8352 8 6 2.6254 3.4104 1.1963 9 6 2.9551 4.0306 0.0070 10 6 2.8228 3.3446 -1.1918 11 8 3.1471 3.9525 -2.3632 12 6 3.6185 5.2993 -2.2865 13 6 3.9300 5.8116 -3.6941 14 1 3.0499 5.6945 -4.3264 15 6 4.3152 7.2906 -3.6249 16 6 4.6273 7.8028 -5.0325 17 6 5.7893 7.0002 -5.6211 18 1 6.6692 7.1173 -4.9885 19 8 6.0812 7.4789 -6.9356 20 6 5.4041 5.5211 -5.6904 21 6 5.0921 5.0090 -4.2828 22 6 2.3551 2.0387 -1.1930 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.8570 0.9077 2.3793 29 1 2.6633 0.0248 3.6689 30 1 2.9379 3.4365 3.9986 31 1 0.5688 3.6739 3.4987 32 1 2.7279 3.9441 2.1296 33 1 3.3157 5.0486 0.0102 34 1 4.5226 5.3338 -1.6786 35 1 2.8517 5.9274 -1.8330 36 1 5.1953 7.4077 -2.9926 37 1 3.4875 7.8624 -3.2051 38 1 4.9013 8.8566 -4.9832 39 1 3.7475 7.6857 -5.6651 40 1 6.8091 7.0142 -7.3708 41 1 4.5243 5.4039 -6.3230 42 1 6.2321 4.9492 -6.1093 43 1 5.9719 5.1261 -3.6501 44 1 4.8172 3.9553 -4.3322 45 1 2.2478 1.5039 -2.1250 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14047408_16737254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:05:16 Heat of formation + Delta-G solvation = -114.464876 kcal Electronic energy + Delta-G solvation = -23792.496708 eV Core-core repulsion = 20354.772948 eV Total energy + Delta-G solvation = -3437.723760 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.171 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59554 -40.32205 -39.27336 -37.33274 -36.69770 -34.93452 -32.70234 -31.88404 -31.39399 -30.53268 -27.18254 -26.04242 -24.86635 -23.83497 -23.08121 -22.50192 -21.31724 -20.94060 -18.88792 -18.35692 -18.24455 -17.72909 -17.15114 -16.81062 -16.40533 -16.01861 -15.69718 -15.53761 -15.27871 -14.82220 -14.75206 -14.48805 -14.27328 -14.24549 -14.01913 -13.77438 -13.57304 -13.36355 -13.25005 -13.09705 -12.73833 -12.50736 -12.34763 -12.19087 -12.09311 -11.92234 -11.85428 -11.75265 -11.62693 -11.60340 -11.14843 -10.76764 -10.22505 -9.98480 -9.29862 -4.97843 0.12226 0.16035 1.29722 1.61236 1.94809 2.01786 2.45926 3.17342 3.42401 3.55725 3.57661 3.60957 3.66317 3.74757 3.95545 3.99344 4.03309 4.04484 4.12121 4.17202 4.25294 4.28854 4.29805 4.37175 4.42141 4.44335 4.45731 4.51221 4.54363 4.67901 4.75744 4.86175 4.91839 4.98098 5.00232 5.02834 5.05190 5.09104 5.11065 5.14511 5.18585 5.26058 5.33105 5.37203 5.49807 5.62266 6.27525 6.81599 6.94079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.020 4.020 4 C -0.129 4.129 5 C -0.070 4.070 6 O -0.560 6.560 7 Si 0.767 3.233 8 C -0.097 4.097 9 C -0.217 4.217 10 C 0.132 3.868 11 O -0.321 6.321 12 C 0.059 3.941 13 C -0.082 4.082 14 H 0.076 0.924 15 C -0.104 4.104 16 C -0.113 4.113 17 C 0.101 3.899 18 H 0.063 0.937 19 O -0.590 6.590 20 C -0.146 4.146 21 C -0.108 4.108 22 C -0.164 4.164 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.401 0.599 30 H -0.294 1.294 31 H -0.293 1.293 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.393 0.607 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.815 -2.084 3.596 4.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.021 4.021 4 C -0.130 4.130 5 C -0.180 4.180 6 O -0.370 6.370 7 Si 0.673 3.327 8 C -0.115 4.115 9 C -0.235 4.235 10 C 0.086 3.914 11 O -0.235 6.235 12 C -0.016 4.016 13 C -0.101 4.101 14 H 0.094 0.906 15 C -0.141 4.141 16 C -0.150 4.150 17 C 0.043 3.957 18 H 0.081 0.919 19 O -0.398 6.398 20 C -0.184 4.184 21 C -0.146 4.146 22 C -0.182 4.182 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.252 0.748 30 H -0.222 1.222 31 H -0.220 1.220 32 H 0.139 0.861 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.243 0.757 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.019 -0.699 3.186 3.417 hybrid contribution 0.611 -0.036 -0.735 0.956 sum -0.408 -0.736 2.451 2.591 Atomic orbital electron populations 1.21761 0.93566 1.02915 1.02049 1.20684 0.96893 0.90762 1.04270 1.19814 0.94595 0.96757 0.90889 1.19447 1.04378 0.94224 0.94925 1.24715 0.93947 1.00201 0.99140 1.86466 1.45963 1.57276 1.47265 0.94583 0.76388 0.77554 0.84127 1.20950 0.97728 0.95049 0.97763 1.21316 1.08394 1.02023 0.91788 1.19104 0.94701 0.92658 0.84949 1.86051 1.79701 1.29469 1.28258 1.23071 0.99455 0.79960 0.99121 1.21184 0.99391 0.95476 0.94035 0.90570 1.21436 1.02841 0.93391 0.96447 1.21456 0.97730 0.99831 0.96030 1.21907 0.97566 0.92567 0.83704 0.91925 1.86479 1.58524 1.64059 1.30771 1.22215 1.02345 0.96268 0.97586 1.21480 0.97854 0.99512 0.95760 1.20573 1.05211 0.93151 0.99276 0.93067 0.90617 0.92267 0.90416 0.89109 0.89091 0.74753 1.22198 1.22049 0.86074 0.83779 0.91027 0.90980 0.90330 0.89945 0.91020 0.91968 0.75702 0.92032 0.90675 0.91183 0.91844 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.17 9.78 71.98 0.70 0.87 16 2 C -0.09 -0.11 5.43 29.85 0.16 0.05 16 3 C -0.02 -0.12 5.13 -19.88 -0.10 -0.22 16 4 C -0.13 -0.83 5.29 -19.85 -0.11 -0.94 16 5 C -0.07 -0.03 1.91 71.24 0.14 0.11 16 6 O -0.56 0.10 11.88 -148.98 -1.77 -1.67 16 7 Si 0.77 -0.74 30.19 68.60 2.07 1.33 16 8 C -0.10 -0.73 8.65 22.25 0.19 -0.54 16 9 C -0.22 -1.39 9.04 22.36 0.20 -1.19 16 10 C 0.13 0.97 6.69 22.51 0.15 1.12 16 11 O -0.32 -1.93 9.67 -92.45 -0.89 -2.83 16 12 C 0.06 0.03 4.12 71.98 0.30 0.32 16 13 C -0.08 0.06 2.43 -10.79 -0.03 0.03 16 14 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 15 C -0.10 0.30 5.20 30.59 0.16 0.46 16 16 C -0.11 -0.03 5.57 30.59 0.17 0.15 16 17 C 0.10 0.03 3.47 30.59 0.11 0.13 16 18 H 0.06 -0.09 8.14 -2.38 -0.02 -0.10 16 19 O -0.59 -1.70 13.32 -148.98 -1.98 -3.69 16 20 C -0.15 0.07 5.55 30.59 0.17 0.24 16 21 C -0.11 0.03 5.10 30.60 0.16 0.19 16 22 C -0.16 -1.13 9.62 22.37 0.22 -0.92 16 23 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 24 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 25 H 0.06 -0.10 6.67 -2.39 -0.02 -0.11 16 26 H 0.08 0.03 8.05 -2.39 -0.02 0.01 16 27 H 0.09 0.09 6.43 -2.39 -0.02 0.08 16 28 H 0.09 -0.30 5.90 -2.39 -0.01 -0.32 16 29 H 0.40 -4.33 8.74 -74.06 -0.65 -4.98 16 30 H -0.29 -1.73 6.74 99.48 0.67 -1.06 16 31 H -0.29 -1.50 7.11 99.48 0.71 -0.79 16 32 H 0.12 0.80 4.89 -2.91 -0.01 0.78 16 33 H 0.14 0.30 6.30 -2.91 -0.02 0.29 16 34 H 0.07 -0.08 7.66 -2.39 -0.02 -0.10 16 35 H 0.07 -0.09 7.66 -2.38 -0.02 -0.11 16 36 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.08 -0.35 8.14 -2.38 -0.02 -0.37 16 38 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.39 -1.94 9.08 -74.06 -0.67 -2.61 16 41 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.06 0.14 7.82 -2.38 -0.02 0.13 16 45 H 0.14 0.65 8.06 -2.91 -0.02 0.63 16 Total: 0.00 -15.95 348.72 -0.32 -16.27 By element: Atomic # 1 Polarization: -8.95 SS G_CDS: -0.33 Total: -9.28 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 2.59 Total: -0.13 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -4.65 Total: -8.19 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: 2.07 Total: 1.33 kcal Total: -15.95 -0.32 -16.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_16737254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.193 kcal (2) G-P(sol) polarization free energy of solvation -15.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds